Wall clock time and date at job start Wed Apr 1 2020 02:55:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 N 1.29110 * 126.01021 * 2 1
4 4 N 1.29022 * 110.25918 * 180.02562 * 3 2 1
5 5 C 1.32903 * 108.63565 * 0.02562 * 4 3 2
6 6 C 1.34396 * 126.00507 * 180.02562 * 2 1 3
7 7 C 1.50531 * 129.25660 * 359.84399 * 6 2 1
8 8 C 1.53436 * 108.32669 * 196.44277 * 7 6 2
9 9 H 1.09006 * 109.45277 * 70.30492 * 8 7 6
10 10 C 1.50697 * 109.46168 * 190.25518 * 8 7 6
11 11 O 1.21290 * 119.99619 * 0.02562 * 10 8 7
12 12 N 1.34773 * 120.00460 * 179.97438 * 10 8 7
13 13 C 1.46497 * 120.00186 * 180.02562 * 12 10 8
14 14 H 1.08999 * 110.55812 * 34.30158 * 13 12 10
15 15 C 1.54858 * 110.62907 * 271.39825 * 13 12 10
16 16 C 1.55838 * 103.44728 * 241.51162 * 15 13 12
17 17 H 1.09006 * 115.56107 * 159.56109 * 16 15 13
18 18 C 1.55843 * 105.06347 * 288.17416 * 16 15 13
19 19 C 1.54857 * 103.44455 * 71.82716 * 18 16 15
20 20 C 1.55763 * 103.59531 * 359.94057 * 19 18 16
21 21 H 1.08996 * 115.65186 * 159.69106 * 20 19 18
22 22 N 1.50244 * 101.05266 * 32.93914 * 16 15 13
23 23 C 1.36932 * 130.84189 * 126.01027 * 22 16 15
24 24 H 1.07994 * 120.00209 * 180.02562 * 23 22 16
25 25 C 1.38815 * 119.99642 * 0.03050 * 23 22 16
26 26 N 1.31611 * 120.00104 * 359.97438 * 25 23 22
27 27 Si 1.86807 * 119.99536 * 179.97438 * 25 23 22
28 28 H 1.48501 * 109.47028 * 59.99888 * 27 25 23
29 29 H 1.48502 * 109.46596 * 179.97438 * 27 25 23
30 30 H 1.48500 * 109.47112 * 299.99419 * 27 25 23
31 31 C 1.53104 * 109.55357 * 310.28613 * 8 7 6
32 32 C 1.50605 * 129.16079 * 179.78330 * 5 4 3
33 33 H 1.09009 * 109.46405 * 269.99730 * 1 2 3
34 34 H 1.09000 * 109.47133 * 29.99458 * 1 2 3
35 35 H 1.08996 * 109.47458 * 149.99758 * 1 2 3
36 36 H 1.08995 * 109.69855 * 76.73701 * 7 6 2
37 37 H 1.09001 * 109.69242 * 316.15247 * 7 6 2
38 38 H 0.96999 * 119.99889 * 0.02562 * 12 10 8
39 39 H 1.09009 * 110.62295 * 0.02562 * 15 13 12
40 40 H 1.08997 * 110.62442 * 122.85820 * 15 13 12
41 41 H 1.08997 * 110.62599 * 190.31291 * 18 16 15
42 42 H 1.09000 * 110.62822 * 313.17479 * 18 16 15
43 43 H 1.09000 * 110.62272 * 118.49012 * 19 18 16
44 44 H 1.09000 * 110.62108 * 241.50861 * 19 18 16
45 45 H 0.97009 * 119.99895 * 180.02562 * 26 25 23
46 46 H 1.09005 * 109.44935 * 190.09648 * 31 8 7
47 47 H 1.08998 * 109.45529 * 310.02668 * 31 8 7
48 48 H 1.08993 * 109.69263 * 316.34334 * 32 5 4
49 49 H 1.09003 * 109.68810 * 76.87829 * 32 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2240 1.0444 0.0000
4 7 3.4658 0.6941 -0.0005
5 6 3.5327 -0.6332 -0.0015
6 6 2.2550 -1.0872 -0.0005
7 6 1.8721 -2.5430 0.0020
8 6 3.1013 -3.3645 0.4126
9 1 3.3140 -3.1966 1.4684
10 6 2.8265 -4.8283 0.1827
11 8 1.7559 -5.1813 -0.2649
12 7 3.7706 -5.7450 0.4735
13 6 3.5036 -7.1679 0.2495
14 1 2.8714 -7.3053 -0.6277
15 6 2.8472 -7.8033 1.4999
16 6 3.8738 -8.8924 1.9343
17 1 3.7958 -9.2263 2.9690
18 6 3.7577 -10.0115 0.8559
19 6 4.4142 -9.3761 -0.3944
20 6 4.8374 -7.9590 0.0944
21 1 5.6099 -7.4672 -0.4968
22 7 5.1687 -8.2424 1.5366
23 6 6.3018 -7.9862 2.2616
24 1 7.1450 -7.5013 1.7924
25 6 6.3665 -8.3499 3.5997
26 7 5.3388 -8.9405 4.1716
27 14 7.9126 -8.0010 4.5886
28 1 8.1727 -6.5390 4.6011
29 1 7.7284 -8.4826 5.9812
30 1 9.0651 -8.7037 3.9696
31 6 4.3083 -2.9344 -0.4254
32 6 4.7468 -1.5243 -0.0068
33 1 -0.3632 0.0000 1.0278
34 1 -0.3633 0.8900 -0.5137
35 1 -0.3634 -0.8899 -0.5138
36 1 1.5487 -2.8396 -0.9957
37 1 1.0644 -2.7091 0.7149
38 1 4.6269 -5.4627 0.8311
39 1 2.7199 -7.0595 2.2866
40 1 1.8895 -8.2557 1.2428
41 1 4.3046 -10.9018 1.1661
42 1 2.7122 -10.2522 0.6633
43 1 5.2866 -9.9515 -0.7042
44 1 3.6941 -9.2998 -1.2092
45 1 5.3840 -9.1943 5.1068
46 1 5.1297 -3.6325 -0.2638
47 1 4.0356 -2.9332 -1.4808
48 1 5.4794 -1.1427 -0.7180
49 1 5.1848 -1.5542 0.9909
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001097726426.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:16
Heat of formation + Delta-G solvation = 78.561381 kcal
Electronic energy + Delta-G solvation = -31093.435660 eV
Core-core repulsion = 27057.599787 eV
Total energy + Delta-G solvation = -4035.835873 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-44.44092 -41.36400 -40.11536 -37.56624 -35.89086 -35.24060 -34.35582 -31.65755
-31.51512 -30.90297 -30.30138 -29.20756 -28.70131 -26.15540 -25.54961 -24.32645
-22.80152 -22.37830 -21.49041 -21.34215 -20.53668 -20.09972 -18.78966 -18.42547
-17.91482 -17.43208 -17.23453 -16.70651 -16.18411 -15.74691 -15.61230 -15.41275
-15.06959 -14.82175 -14.71092 -14.54955 -14.28202 -14.11406 -13.69992 -13.64484
-13.59220 -13.14221 -13.01866 -12.84969 -12.80724 -12.74830 -12.61792 -12.59493
-12.18229 -12.04659 -11.95634 -11.92757 -11.85267 -11.66267 -11.55378 -11.11710
-10.95302 -10.88463 -10.85454 -10.53665 -9.89975 -9.83124 -8.81579 -7.71127
-5.09920 0.52132 1.43002 1.46042 1.53289 1.54155 1.59710 1.72270
2.31831 2.54554 3.16560 3.42645 3.44185 3.49984 3.72637 3.77704
3.78554 3.94714 4.05721 4.13988 4.17184 4.25008 4.30574 4.33803
4.44503 4.49985 4.51430 4.55767 4.56547 4.67399 4.68915 4.77283
4.88383 4.89229 4.90744 4.96808 5.03692 5.07856 5.15256 5.20320
5.23353 5.24785 5.31327 5.43780 5.57882 5.60821 5.66590 5.78736
5.95464 6.30956 6.72974 7.10926 7.35613 7.43395 7.78105 8.63864
9.36179
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.013413 B = 0.002926 C = 0.002602
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2086.949966 B = 9565.760808 C =10759.749927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.066 3.934
2 N -0.277 5.277
3 N -0.128 5.128
4 N -0.299 5.299
5 C -0.033 4.033
6 C -0.014 4.014
7 C -0.014 4.014
8 C -0.096 4.096
9 H 0.109 0.891
10 C 0.522 3.478
11 O -0.580 6.580
12 N -0.702 5.702
13 C 0.142 3.858
14 H 0.088 0.912
15 C -0.132 4.132
16 C 0.141 3.859
17 H 0.111 0.889
18 C -0.134 4.134
19 C -0.120 4.120
20 C 0.127 3.873
21 H 0.108 0.892
22 N -0.609 5.609
23 C -0.210 4.210
24 H 0.088 0.912
25 C -0.067 4.067
26 N -0.949 5.949
27 Si 0.970 3.030
28 H -0.277 1.277
29 H -0.305 1.305
30 H -0.284 1.284
31 C -0.102 4.102
32 C -0.028 4.028
33 H 0.108 0.892
34 H 0.115 0.885
35 H 0.120 0.880
36 H 0.098 0.902
37 H 0.093 0.907
38 H 0.407 0.593
39 H 0.034 0.966
40 H 0.063 0.937
41 H 0.034 0.966
42 H 0.069 0.931
43 H 0.057 0.943
44 H 0.082 0.918
45 H 0.243 0.757
46 H 0.096 0.904
47 H 0.077 0.923
48 H 0.097 0.903
49 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.260 11.509 -11.037 17.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.070 5.070
3 N -0.105 5.105
4 N -0.162 5.162
5 C -0.174 4.174
6 C -0.149 4.149
7 C -0.054 4.054
8 C -0.118 4.118
9 H 0.127 0.873
10 C 0.309 3.691
11 O -0.461 6.461
12 N -0.350 5.350
13 C 0.035 3.965
14 H 0.106 0.894
15 C -0.173 4.173
16 C 0.035 3.965
17 H 0.128 0.872
18 C -0.173 4.173
19 C -0.159 4.159
20 C 0.020 3.980
21 H 0.125 0.875
22 N -0.331 5.331
23 C -0.339 4.339
24 H 0.105 0.895
25 C -0.259 4.259
26 N -0.599 5.599
27 Si 0.800 3.200
28 H -0.203 1.203
29 H -0.232 1.232
30 H -0.210 1.210
31 C -0.140 4.140
32 C -0.067 4.067
33 H 0.127 0.873
34 H 0.134 0.866
35 H 0.139 0.861
36 H 0.116 0.884
37 H 0.112 0.888
38 H 0.243 0.757
39 H 0.053 0.947
40 H 0.082 0.918
41 H 0.053 0.947
42 H 0.088 0.912
43 H 0.076 0.924
44 H 0.100 0.900
45 H 0.053 0.947
46 H 0.115 0.885
47 H 0.096 0.904
48 H 0.116 0.884
49 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -8.833 12.869 -11.095 19.150
hybrid contribution 0.816 -0.944 1.307 1.807
sum -8.017 11.925 -9.788 17.386
Atomic orbital electron populations
1.22747 0.70084 1.07724 1.06784 1.47200 1.10685 1.03853 1.45253
1.78481 0.96368 1.12430 1.23232 1.74733 1.10370 1.13357 1.17787
1.22195 0.96485 0.90982 1.07708 1.22012 0.91075 0.92760 1.09051
1.19851 0.97632 0.83499 1.04404 1.21287 0.97157 0.89866 1.03473
0.87281 1.20689 0.83463 0.88371 0.76608 1.90652 1.25599 1.82636
1.47209 1.45967 1.18233 1.06449 1.64384 1.22389 0.97551 0.79643
0.96914 0.89435 1.23305 0.98112 0.98981 0.96893 1.23501 0.83675
0.90671 0.98701 0.87170 1.22973 0.99254 0.98213 0.96860 1.22817
0.99975 0.96292 0.96844 1.23443 0.93686 0.94599 0.86273 0.87464
1.46781 1.12526 1.67877 1.05869 1.19325 0.92009 1.30908 0.91692
0.89461 1.25374 1.00104 1.02449 0.98020 1.69739 1.30909 1.47914
1.11329 0.85270 0.79631 0.77868 0.77243 1.20316 1.23167 1.21028
1.21622 0.96441 0.96092 0.99878 1.20041 0.91833 0.90813 1.04043
0.87321 0.86613 0.86145 0.88390 0.88848 0.75700 0.94685 0.91800
0.94671 0.91236 0.92395 0.89983 0.94713 0.88531 0.90396 0.88447
0.88850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.61 11.27 127.77 1.44 2.05 16
2 N -0.28 -5.60 3.73 -356.41 -1.33 -6.93 16
3 N -0.13 -3.43 13.19 37.02 0.49 -2.94 16
4 N -0.30 -8.67 12.40 -48.98 -0.61 -9.27 16
5 C -0.03 -0.77 7.11 41.75 0.30 -0.47 16
6 C -0.01 -0.29 6.76 41.50 0.28 -0.01 16
7 C -0.01 -0.26 4.68 29.94 0.14 -0.12 16
8 C -0.10 -1.88 2.50 -11.36 -0.03 -1.91 16
9 H 0.11 2.09 8.12 -2.38 -0.02 2.08 16
10 C 0.52 13.74 7.15 87.66 0.63 14.37 16
11 O -0.58 -18.67 15.50 -3.06 -0.05 -18.72 16
12 N -0.70 -19.71 4.90 -434.90 -2.13 -21.84 16
13 C 0.14 4.53 2.75 46.61 0.13 4.65 16
14 H 0.09 2.71 7.30 -2.39 -0.02 2.70 16
15 C -0.13 -4.99 6.22 32.21 0.20 -4.79 16
16 C 0.14 6.15 4.69 46.22 0.22 6.37 16
17 H 0.11 5.79 5.57 -2.38 -0.01 5.78 16
18 C -0.13 -4.91 6.44 32.21 0.21 -4.70 16
19 C -0.12 -3.76 6.43 32.18 0.21 -3.56 16
20 C 0.13 4.26 5.08 46.11 0.23 4.50 16
21 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16
22 N -0.61 -26.80 2.99 -614.33 -1.84 -28.63 16
23 C -0.21 -10.38 10.59 84.04 0.89 -9.49 16
24 H 0.09 4.04 7.83 -2.91 -0.02 4.01 16
25 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16
26 N -0.95 -53.33 10.48 21.65 0.23 -53.10 16
27 Si 0.97 43.12 29.55 68.60 2.03 45.15 16
28 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16
29 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16
30 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
31 C -0.10 -1.67 5.18 30.79 0.16 -1.51 16
32 C -0.03 -0.50 6.31 29.98 0.19 -0.32 16
33 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16
34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16
35 H 0.12 0.64 7.96 -2.39 -0.02 0.63 16
36 H 0.10 1.81 7.78 -2.39 -0.02 1.79 16
37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
38 H 0.41 10.99 7.97 -92.71 -0.74 10.25 16
39 H 0.03 1.46 7.98 -2.38 -0.02 1.44 16
40 H 0.06 2.23 7.83 -2.39 -0.02 2.21 16
41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16
42 H 0.07 2.22 7.82 -2.39 -0.02 2.20 16
43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
44 H 0.08 2.12 7.82 -2.39 -0.02 2.10 16
45 H 0.24 13.62 8.31 -92.70 -0.77 12.85 16
46 H 0.10 1.40 7.30 -2.38 -0.02 1.38 16
47 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16
48 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
49 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
Total: -1.00 -69.95 385.56 2.68 -67.27
By element:
Atomic # 1 Polarization: 26.76 SS G_CDS: 0.23 Total: 27.00 kcal
Atomic # 6 Polarization: -3.64 SS G_CDS: 5.66 Total: 2.02 kcal
Atomic # 7 Polarization: -117.53 SS G_CDS: -5.19 Total: -122.72 kcal
Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.72 kcal
Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal
Total: -69.95 2.68 -67.27 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001097726426.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.835 kcal
(2) G-P(sol) polarization free energy of solvation -69.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.882 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds