Wall clock time and date at job start Wed Apr 1 2020 03:02:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 N 1.40445 * 126.82108 * 2 1
4 4 C 1.30712 * 106.79330 * 180.26060 * 3 2 1
5 5 C 1.50700 * 125.52786 * 179.78567 * 4 3 2
6 6 C 1.53000 * 117.49546 * 8.58315 * 5 4 3
7 7 C 1.52995 * 59.99958 * 252.50504 * 6 5 4
8 8 N 1.33238 * 108.94536 * 359.75062 * 4 3 2
9 9 C 1.30833 * 109.82812 * 0.02562 * 8 4 3
10 10 C 1.50708 * 125.95883 * 180.02562 * 9 8 4
11 11 C 1.50697 * 109.47205 * 90.02274 * 10 9 8
12 12 O 1.21278 * 119.99973 * 0.02562 * 11 10 9
13 13 N 1.34779 * 120.00041 * 179.97438 * 11 10 9
14 14 C 1.46496 * 120.00106 * 180.02562 * 13 11 10
15 15 H 1.08997 * 110.68559 * 36.53095 * 14 13 11
16 16 C 1.54857 * 110.62430 * 273.54522 * 14 13 11
17 17 C 1.55841 * 103.44584 * 241.51241 * 16 14 13
18 18 H 1.08995 * 115.56485 * 158.81503 * 17 16 14
19 19 C 1.55848 * 105.06248 * 287.42565 * 17 16 14
20 20 C 1.56686 * 102.60142 * 72.30138 * 19 17 16
21 21 C 1.55845 * 110.62436 * 159.52059 * 14 13 11
22 22 H 1.08990 * 115.56380 * 319.67284 * 21 14 13
23 23 N 1.50235 * 101.05038 * 85.55287 * 21 14 13
24 24 C 1.36942 * 130.83958 * 233.96847 * 23 21 14
25 25 H 1.08000 * 119.99671 * 359.97139 * 24 23 21
26 26 C 1.38810 * 120.00206 * 179.97438 * 24 23 21
27 27 N 1.31617 * 119.99935 * 359.97438 * 26 24 23
28 28 Si 1.86799 * 119.99935 * 179.97438 * 26 24 23
29 29 H 1.48498 * 109.47482 * 89.99386 * 28 26 24
30 30 H 1.48502 * 109.47243 * 209.99770 * 28 26 24
31 31 H 1.48508 * 109.47114 * 329.99548 * 28 26 24
32 32 H 1.09000 * 109.47122 * 270.16682 * 1 2 3
33 33 H 1.09005 * 109.47455 * 30.17521 * 1 2 3
34 34 H 1.09006 * 109.47070 * 150.16805 * 1 2 3
35 35 H 1.08996 * 115.54709 * 154.28527 * 5 4 3
36 36 H 1.08990 * 117.50248 * 359.97438 * 6 5 4
37 37 H 1.09008 * 117.49453 * 145.02007 * 6 5 4
38 38 H 1.08993 * 117.50786 * 252.51118 * 7 6 5
39 39 H 1.09006 * 117.49368 * 107.49064 * 7 6 5
40 40 H 1.08997 * 109.46781 * 330.01621 * 10 9 8
41 41 H 1.09001 * 109.46863 * 210.02510 * 10 9 8
42 42 H 0.97004 * 119.99423 * 359.97438 * 13 11 10
43 43 H 1.09004 * 110.62191 * 0.02562 * 16 14 13
44 44 H 1.08997 * 110.62718 * 122.85832 * 16 14 13
45 45 H 1.08998 * 110.62815 * 190.32071 * 19 17 16
46 46 H 1.09005 * 110.62507 * 313.33335 * 19 17 16
47 47 H 1.09000 * 110.35057 * 241.21812 * 20 19 17
48 48 H 1.08993 * 110.88556 * 118.36604 * 20 19 17
49 49 H 0.97004 * 119.99799 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.3067 1.1243 0.0000
4 6 3.5348 0.6766 -0.0057
5 6 4.7775 1.5290 -0.0125
6 6 4.6020 3.0354 0.1897
7 6 4.9710 2.4866 -1.1899
8 7 3.5096 -0.6555 -0.0037
9 6 2.2707 -1.0760 0.0026
10 6 1.8248 -2.5156 0.0072
11 6 1.6820 -2.9927 1.4295
12 8 1.9186 -2.2380 2.3489
13 7 1.2904 -4.2578 1.6799
14 6 1.1511 -4.7215 3.0625
15 1 0.7647 -3.9252 3.6986
16 6 2.5060 -5.2419 3.6024
17 6 2.2172 -6.7393 3.9233
18 1 3.0925 -7.3868 3.9738
19 6 1.3243 -6.7149 5.2004
20 6 -0.0467 -6.1939 4.6491
21 6 0.2282 -5.9754 3.1307
22 1 -0.6481 -5.9500 2.4831
23 7 1.2148 -7.0745 2.8556
24 6 1.2039 -8.0741 1.9196
25 1 0.3810 -8.1541 1.2247
26 6 2.2503 -8.9844 1.8641
27 7 3.2533 -8.8865 2.7107
28 14 2.2351 -10.3483 0.5879
29 1 2.9080 -9.8765 -0.6490
30 1 2.9537 -11.5334 1.1212
31 1 0.8312 -10.7194 0.2767
32 1 -0.3633 0.0030 1.0277
33 1 -0.3634 0.8884 -0.5166
34 1 -0.3633 -0.8915 -0.5112
35 1 5.6684 1.0645 0.4102
36 1 3.5878 3.4099 0.3273
37 1 5.3776 3.5623 0.7457
38 1 5.9892 2.6524 -1.5417
39 1 4.1994 2.5001 -1.9597
40 1 2.5652 -3.1269 -0.5086
41 1 0.8650 -2.6002 -0.5025
42 1 1.1002 -4.8610 0.9444
43 1 3.2816 -5.1545 2.8415
44 1 2.7929 -4.7017 4.5046
45 1 1.2160 -7.7182 5.6125
46 1 1.7383 -6.0354 5.9454
47 1 -0.3158 -5.2534 5.1298
48 1 -0.8314 -6.9363 4.7943
49 1 3.9844 -9.5228 2.6722
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098443741.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:35
Heat of formation + Delta-G solvation = 126.607668 kcal
Electronic energy + Delta-G solvation = -30472.258075 eV
Core-core repulsion = 26438.505645 eV
Total energy + Delta-G solvation = -4033.752430 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.22936 -39.81807 -38.40881 -37.36306 -33.99146 -33.85737 -32.72309 -32.44660
-29.47508 -29.14074 -28.62879 -27.73180 -27.04438 -24.23680 -23.85846 -22.60497
-22.10761 -20.73417 -20.08852 -19.91540 -19.56797 -18.70786 -17.18754 -17.11218
-17.03225 -15.98595 -15.80647 -15.48420 -15.08130 -14.92069 -14.78975 -14.09561
-13.94620 -13.81802 -13.53532 -13.42971 -13.32853 -12.86459 -12.42046 -12.26792
-12.06146 -11.85996 -11.81509 -11.64336 -11.24642 -11.14838 -11.04802 -10.97345
-10.93050 -10.71783 -10.54734 -10.44428 -10.13474 -9.98962 -9.96112 -9.87406
-9.66656 -9.34488 -9.25663 -9.13865 -9.00262 -8.54235 -6.99396 -5.78088
-3.17989 1.48801 2.18265 2.68447 2.80737 3.33288 3.38128 3.41035
3.46316 3.72273 3.86311 4.24789 4.35295 4.36733 4.65362 4.71575
4.79593 4.89905 4.98888 5.00649 5.08846 5.16711 5.28035 5.32061
5.41686 5.46280 5.57920 5.60213 5.64003 5.83261 5.89714 5.95394
6.01251 6.05417 6.10574 6.25087 6.25950 6.37816 6.39395 6.45445
6.55486 6.69478 6.70425 6.80216 6.91476 7.05818 7.29875 7.42394
7.75489 7.86251 8.10446 8.13700 8.48167 9.02901 9.66514 10.47182
11.30592
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.014677 B = 0.002523 C = 0.002398
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1907.353714 B =11094.084135 C =11671.379180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.096 3.904
2 N -0.374 5.374
3 N -0.319 5.319
4 C 0.255 3.745
5 C -0.069 4.069
6 C -0.161 4.161
7 C -0.160 4.160
8 N -0.526 5.526
9 C 0.309 3.691
10 C -0.069 4.069
11 C 0.516 3.484
12 O -0.539 6.539
13 N -0.701 5.701
14 C 0.130 3.870
15 H 0.077 0.923
16 C -0.142 4.142
17 C 0.153 3.847
18 H 0.152 0.848
19 C -0.140 4.140
20 C -0.127 4.127
21 C 0.126 3.874
22 H 0.088 0.912
23 N -0.590 5.590
24 C -0.217 4.217
25 H 0.078 0.922
26 C -0.009 4.009
27 N -0.918 5.918
28 Si 0.915 3.085
29 H -0.289 1.289
30 H -0.291 1.291
31 H -0.283 1.283
32 H 0.082 0.918
33 H 0.091 0.909
34 H 0.091 0.909
35 H 0.131 0.869
36 H 0.102 0.898
37 H 0.103 0.897
38 H 0.104 0.896
39 H 0.095 0.905
40 H 0.132 0.868
41 H 0.114 0.886
42 H 0.404 0.596
43 H 0.060 0.940
44 H 0.052 0.948
45 H 0.055 0.945
46 H 0.050 0.950
47 H 0.050 0.950
48 H 0.057 0.943
49 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.403 17.140 -5.922 18.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.164 5.164
3 N -0.147 5.147
4 C -0.027 4.027
5 C -0.089 4.089
6 C -0.199 4.199
7 C -0.198 4.198
8 N -0.253 5.253
9 C 0.032 3.968
10 C -0.112 4.112
11 C 0.299 3.701
12 O -0.417 6.417
13 N -0.351 5.351
14 C 0.024 3.976
15 H 0.095 0.905
16 C -0.183 4.183
17 C 0.047 3.953
18 H 0.169 0.831
19 C -0.179 4.179
20 C -0.167 4.167
21 C 0.017 3.983
22 H 0.106 0.894
23 N -0.310 5.310
24 C -0.345 4.345
25 H 0.096 0.904
26 C -0.205 4.205
27 N -0.565 5.565
28 Si 0.746 3.254
29 H -0.217 1.217
30 H -0.217 1.217
31 H -0.208 1.208
32 H 0.100 0.900
33 H 0.110 0.890
34 H 0.109 0.891
35 H 0.149 0.851
36 H 0.121 0.879
37 H 0.121 0.879
38 H 0.122 0.878
39 H 0.113 0.887
40 H 0.150 0.850
41 H 0.132 0.868
42 H 0.239 0.761
43 H 0.079 0.921
44 H 0.071 0.929
45 H 0.074 0.926
46 H 0.069 0.931
47 H 0.069 0.931
48 H 0.076 0.924
49 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -4.142 17.915 -5.412 19.168
hybrid contribution -0.394 -1.261 -0.910 1.604
sum -4.536 16.654 -6.321 18.382
Atomic orbital electron populations
1.21948 0.73973 1.04550 1.04155 1.50046 1.07707 1.03770 1.54887
1.77877 1.01329 1.07493 1.28008 1.23015 0.92363 0.89268 0.98025
1.20042 0.93567 0.89835 1.05494 1.23022 1.03727 0.93835 0.99317
1.23015 1.03114 1.01975 0.91708 1.70240 1.19449 1.10741 1.24831
1.23313 0.86019 0.91403 0.96044 1.20233 1.04834 0.88233 0.97882
1.19955 0.77721 0.82724 0.89723 1.90733 1.49800 1.55102 1.46052
1.45942 1.67462 1.11485 1.10175 1.22658 0.98135 0.96035 0.80751
0.90526 1.23453 0.95843 0.99391 0.99575 1.23714 0.94913 0.91738
0.84948 0.83122 1.23373 0.96170 0.99462 0.98893 1.23168 0.97928
0.99192 0.96434 1.23146 0.92419 0.88025 0.94685 0.89383 1.46514
1.19609 1.29177 1.35733 1.18978 1.04538 1.03317 1.07655 0.90385
1.24711 0.96924 0.99418 0.99430 1.69468 1.10793 1.38107 1.38137
0.86074 0.77295 0.81455 0.80613 1.21652 1.21704 1.20835 0.89992
0.88988 0.89097 0.85121 0.87929 0.87907 0.87804 0.88673 0.84997
0.86840 0.76137 0.92148 0.92892 0.92593 0.93127 0.93123 0.92392
0.93478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.81 11.33 59.85 0.68 1.49 16
2 N -0.37 -5.04 4.04 -65.09 -0.26 -5.30 16
3 N -0.32 -4.78 12.24 32.42 0.40 -4.38 16
4 C 0.25 3.91 7.69 -156.86 -1.21 2.70 16
5 C -0.07 -0.81 6.33 -91.77 -0.58 -1.39 16
6 C -0.16 -1.51 10.13 -26.73 -0.27 -1.78 16
7 C -0.16 -1.44 10.23 -26.74 -0.27 -1.71 16
8 N -0.53 -8.83 11.19 -8.16 -0.09 -8.92 16
9 C 0.31 4.53 6.48 -155.70 -1.01 3.52 16
10 C -0.07 -0.82 6.03 -29.03 -0.17 -0.99 16
11 C 0.52 8.03 7.82 -10.99 -0.09 7.94 16
12 O -0.54 -10.63 15.76 5.56 0.09 -10.54 16
13 N -0.70 -10.93 5.10 -51.40 -0.26 -11.19 16
14 C 0.13 2.31 2.73 -65.43 -0.18 2.13 16
15 H 0.08 1.37 7.36 -51.93 -0.38 0.99 16
16 C -0.14 -2.88 6.22 -24.24 -0.15 -3.03 16
17 C 0.15 3.42 4.67 -62.80 -0.29 3.12 16
18 H 0.15 3.89 5.52 -51.93 -0.29 3.61 16
19 C -0.14 -2.70 6.58 -23.22 -0.15 -2.85 16
20 C -0.13 -2.22 6.49 -23.22 -0.15 -2.37 16
21 C 0.13 2.30 5.04 -62.80 -0.32 1.99 16
22 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
23 N -0.59 -13.37 2.99 -145.82 -0.44 -13.80 16
24 C -0.22 -5.45 10.59 -15.06 -0.16 -5.61 16
25 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16
26 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16
27 N -0.92 -25.25 10.46 55.49 0.58 -24.67 16
28 Si 0.91 20.84 29.55 -169.99 -5.02 15.82 16
29 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16
30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
31 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16
32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.09 0.51 7.10 -51.93 -0.37 0.14 16
35 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16
36 H 0.10 1.05 7.87 -51.93 -0.41 0.64 16
37 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16
38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
40 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16
41 H 0.11 0.86 7.12 -51.93 -0.37 0.49 16
42 H 0.40 5.81 8.62 -40.82 -0.35 5.46 16
43 H 0.06 1.34 7.98 -51.93 -0.41 0.92 16
44 H 0.05 1.03 7.81 -51.93 -0.41 0.62 16
45 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16
46 H 0.05 0.88 7.81 -51.93 -0.41 0.48 16
47 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16
48 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
49 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16
LS Contribution 399.07 15.07 6.01 6.01
Total: -1.00 -33.91 399.07 -10.99 -44.90
By element:
Atomic # 1 Polarization: 16.79 SS G_CDS: -7.57 Total: 9.22 kcal
Atomic # 6 Polarization: 7.27 SS G_CDS: -4.42 Total: 2.85 kcal
Atomic # 7 Polarization: -68.19 SS G_CDS: -0.07 Total: -68.26 kcal
Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -33.91 -10.99 -44.90 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098443741.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 171.509 kcal
(2) G-P(sol) polarization free energy of solvation -33.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal
(6) G-S(sol) free energy of system = (1) + (5) 126.608 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds