Wall clock time and date at job start Wed Apr 1 2020 03:02:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 N 1.40445 * 126.82108 * 2 1
4 4 C 1.30712 * 106.79330 * 180.26060 * 3 2 1
5 5 C 1.50700 * 125.52786 * 179.78567 * 4 3 2
6 6 C 1.53000 * 117.49546 * 8.58315 * 5 4 3
7 7 C 1.52995 * 59.99958 * 252.50504 * 6 5 4
8 8 N 1.33238 * 108.94536 * 359.75062 * 4 3 2
9 9 C 1.30833 * 109.82812 * 0.02562 * 8 4 3
10 10 C 1.50708 * 125.95883 * 180.02562 * 9 8 4
11 11 C 1.50697 * 109.47205 * 90.02274 * 10 9 8
12 12 O 1.21278 * 119.99973 * 0.02562 * 11 10 9
13 13 N 1.34779 * 120.00041 * 179.97438 * 11 10 9
14 14 C 1.46496 * 120.00106 * 180.02562 * 13 11 10
15 15 H 1.08997 * 110.68559 * 36.53095 * 14 13 11
16 16 C 1.54857 * 110.62430 * 273.54522 * 14 13 11
17 17 C 1.55841 * 103.44584 * 241.51241 * 16 14 13
18 18 H 1.08995 * 115.56485 * 158.81503 * 17 16 14
19 19 C 1.55848 * 105.06248 * 287.42565 * 17 16 14
20 20 C 1.56686 * 102.60142 * 72.30138 * 19 17 16
21 21 C 1.55845 * 110.62436 * 159.52059 * 14 13 11
22 22 H 1.08990 * 115.56380 * 319.67284 * 21 14 13
23 23 N 1.50235 * 101.05038 * 85.55287 * 21 14 13
24 24 C 1.36942 * 130.83958 * 233.96847 * 23 21 14
25 25 H 1.08000 * 119.99671 * 359.97139 * 24 23 21
26 26 C 1.38810 * 120.00206 * 179.97438 * 24 23 21
27 27 N 1.31617 * 119.99935 * 359.97438 * 26 24 23
28 28 Si 1.86799 * 119.99935 * 179.97438 * 26 24 23
29 29 H 1.48498 * 109.47482 * 89.99386 * 28 26 24
30 30 H 1.48502 * 109.47243 * 209.99770 * 28 26 24
31 31 H 1.48508 * 109.47114 * 329.99548 * 28 26 24
32 32 H 1.09000 * 109.47122 * 270.16682 * 1 2 3
33 33 H 1.09005 * 109.47455 * 30.17521 * 1 2 3
34 34 H 1.09006 * 109.47070 * 150.16805 * 1 2 3
35 35 H 1.08996 * 115.54709 * 154.28527 * 5 4 3
36 36 H 1.08990 * 117.50248 * 359.97438 * 6 5 4
37 37 H 1.09008 * 117.49453 * 145.02007 * 6 5 4
38 38 H 1.08993 * 117.50786 * 252.51118 * 7 6 5
39 39 H 1.09006 * 117.49368 * 107.49064 * 7 6 5
40 40 H 1.08997 * 109.46781 * 330.01621 * 10 9 8
41 41 H 1.09001 * 109.46863 * 210.02510 * 10 9 8
42 42 H 0.97004 * 119.99423 * 359.97438 * 13 11 10
43 43 H 1.09004 * 110.62191 * 0.02562 * 16 14 13
44 44 H 1.08997 * 110.62718 * 122.85832 * 16 14 13
45 45 H 1.08998 * 110.62815 * 190.32071 * 19 17 16
46 46 H 1.09005 * 110.62507 * 313.33335 * 19 17 16
47 47 H 1.09000 * 110.35057 * 241.21812 * 20 19 17
48 48 H 1.08993 * 110.88556 * 118.36604 * 20 19 17
49 49 H 0.97004 * 119.99799 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.3067 1.1243 0.0000
4 6 3.5348 0.6766 -0.0057
5 6 4.7775 1.5290 -0.0125
6 6 4.6020 3.0354 0.1897
7 6 4.9710 2.4866 -1.1899
8 7 3.5096 -0.6555 -0.0037
9 6 2.2707 -1.0760 0.0026
10 6 1.8248 -2.5156 0.0072
11 6 1.6820 -2.9927 1.4295
12 8 1.9186 -2.2380 2.3489
13 7 1.2904 -4.2578 1.6799
14 6 1.1511 -4.7215 3.0625
15 1 0.7647 -3.9252 3.6986
16 6 2.5060 -5.2419 3.6024
17 6 2.2172 -6.7393 3.9233
18 1 3.0925 -7.3868 3.9738
19 6 1.3243 -6.7149 5.2004
20 6 -0.0467 -6.1939 4.6491
21 6 0.2282 -5.9754 3.1307
22 1 -0.6481 -5.9500 2.4831
23 7 1.2148 -7.0745 2.8556
24 6 1.2039 -8.0741 1.9196
25 1 0.3810 -8.1541 1.2247
26 6 2.2503 -8.9844 1.8641
27 7 3.2533 -8.8865 2.7107
28 14 2.2351 -10.3483 0.5879
29 1 2.9080 -9.8765 -0.6490
30 1 2.9537 -11.5334 1.1212
31 1 0.8312 -10.7194 0.2767
32 1 -0.3633 0.0030 1.0277
33 1 -0.3634 0.8884 -0.5166
34 1 -0.3633 -0.8915 -0.5112
35 1 5.6684 1.0645 0.4102
36 1 3.5878 3.4099 0.3273
37 1 5.3776 3.5623 0.7457
38 1 5.9892 2.6524 -1.5417
39 1 4.1994 2.5001 -1.9597
40 1 2.5652 -3.1269 -0.5086
41 1 0.8650 -2.6002 -0.5025
42 1 1.1002 -4.8610 0.9444
43 1 3.2816 -5.1545 2.8415
44 1 2.7929 -4.7017 4.5046
45 1 1.2160 -7.7182 5.6125
46 1 1.7383 -6.0354 5.9454
47 1 -0.3158 -5.2534 5.1298
48 1 -0.8314 -6.9363 4.7943
49 1 3.9844 -9.5228 2.6722
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001098443741.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:34
Heat of formation + Delta-G solvation = 105.523578 kcal
Electronic energy + Delta-G solvation = -30473.172350 eV
Core-core repulsion = 26438.505645 eV
Total energy + Delta-G solvation = -4034.666705 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-43.25705 -41.24850 -39.84466 -38.17455 -35.30136 -34.90818 -34.38761 -33.64724
-30.93910 -30.71001 -30.08614 -28.94017 -28.06809 -26.06857 -24.75240 -23.50178
-23.26053 -21.96740 -21.50982 -21.16552 -20.77831 -20.24727 -18.80952 -18.31925
-18.07985 -17.28729 -16.82991 -16.73110 -16.40154 -16.24715 -15.84860 -15.66335
-15.33368 -15.04951 -14.61129 -14.44273 -14.32747 -14.14192 -13.71173 -13.63598
-13.24868 -13.12340 -12.88714 -12.83626 -12.72708 -12.71873 -12.61437 -12.40350
-12.07741 -11.96379 -11.88955 -11.86852 -11.66900 -11.48817 -11.27758 -11.05724
-10.99259 -10.91817 -10.83493 -10.63602 -10.17339 -9.95809 -8.84472 -7.71958
-5.12183 0.44829 1.30832 1.52661 1.53251 1.58763 1.61124 1.64767
2.31929 2.53674 2.81425 2.98248 3.36120 3.41402 3.48023 3.48168
3.83917 3.87196 3.97948 4.04502 4.06756 4.09884 4.23309 4.28689
4.30616 4.42087 4.46026 4.49796 4.57749 4.61396 4.63851 4.72004
4.73215 4.85388 4.89136 4.92051 5.10235 5.10846 5.18963 5.19985
5.22282 5.28707 5.36908 5.40512 5.54829 5.61500 5.71897 5.77863
5.91858 6.29757 6.61686 7.05327 7.08641 7.25484 7.76782 8.62015
9.35357
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.014677 B = 0.002523 C = 0.002398
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1907.353714 B =11094.084135 C =11671.379180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.373 5.373
3 N -0.337 5.337
4 C 0.239 3.761
5 C -0.099 4.099
6 C -0.150 4.150
7 C -0.141 4.141
8 N -0.567 5.567
9 C 0.297 3.703
10 C -0.060 4.060
11 C 0.519 3.481
12 O -0.583 6.583
13 N -0.696 5.696
14 C 0.143 3.857
15 H 0.084 0.916
16 C -0.134 4.134
17 C 0.139 3.861
18 H 0.111 0.889
19 C -0.134 4.134
20 C -0.119 4.119
21 C 0.131 3.869
22 H 0.113 0.887
23 N -0.608 5.608
24 C -0.210 4.210
25 H 0.092 0.908
26 C -0.070 4.070
27 N -0.950 5.950
28 Si 0.973 3.027
29 H -0.290 1.290
30 H -0.306 1.306
31 H -0.269 1.269
32 H 0.080 0.920
33 H 0.107 0.893
34 H 0.125 0.875
35 H 0.130 0.870
36 H 0.091 0.909
37 H 0.125 0.875
38 H 0.128 0.872
39 H 0.088 0.912
40 H 0.142 0.858
41 H 0.164 0.836
42 H 0.412 0.588
43 H 0.031 0.969
44 H 0.057 0.943
45 H 0.037 0.963
46 H 0.068 0.932
47 H 0.079 0.921
48 H 0.062 0.938
49 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.707 18.432 -7.209 20.897
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.163 5.163
3 N -0.166 5.166
4 C -0.042 4.042
5 C -0.120 4.120
6 C -0.187 4.187
7 C -0.179 4.179
8 N -0.295 5.295
9 C 0.020 3.980
10 C -0.102 4.102
11 C 0.305 3.695
12 O -0.463 6.463
13 N -0.345 5.345
14 C 0.036 3.964
15 H 0.102 0.898
16 C -0.175 4.175
17 C 0.032 3.968
18 H 0.129 0.871
19 C -0.174 4.174
20 C -0.159 4.159
21 C 0.024 3.976
22 H 0.131 0.869
23 N -0.329 5.329
24 C -0.339 4.339
25 H 0.109 0.891
26 C -0.262 4.262
27 N -0.600 5.600
28 Si 0.804 3.196
29 H -0.217 1.217
30 H -0.234 1.234
31 H -0.194 1.194
32 H 0.098 0.902
33 H 0.125 0.875
34 H 0.143 0.857
35 H 0.148 0.852
36 H 0.109 0.891
37 H 0.144 0.856
38 H 0.147 0.853
39 H 0.107 0.893
40 H 0.160 0.840
41 H 0.182 0.818
42 H 0.248 0.752
43 H 0.050 0.950
44 H 0.075 0.925
45 H 0.056 0.944
46 H 0.086 0.914
47 H 0.098 0.902
48 H 0.081 0.919
49 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -6.513 19.227 -6.721 21.383
hybrid contribution 0.291 -1.606 -0.463 1.697
sum -6.221 17.620 -7.184 20.020
Atomic orbital electron populations
1.22378 0.71335 1.07110 1.04819 1.50350 1.09151 1.03029 1.53794
1.77790 1.01555 1.08641 1.28622 1.23612 0.93465 0.89315 0.97808
1.20237 0.92645 0.90787 1.08343 1.23081 1.03870 0.91969 0.99817
1.23086 1.04245 0.99590 0.91008 1.70206 1.21220 1.11800 1.26298
1.23706 0.85931 0.92572 0.95830 1.20325 1.07736 0.86612 0.95499
1.20483 0.76202 0.82003 0.90859 1.90721 1.51547 1.56180 1.47842
1.45839 1.67351 1.11791 1.09566 1.22407 0.96064 0.95861 0.82038
0.89847 1.23310 0.96696 0.98387 0.99063 1.23513 0.94447 0.92061
0.86732 0.87149 1.23280 0.97064 0.99175 0.97866 1.23128 0.96475
1.00618 0.95650 1.23373 0.92272 0.86260 0.95665 0.86909 1.46691
1.20940 1.29814 1.35458 1.19388 1.04055 1.02994 1.07435 0.89052
1.25442 0.97297 1.01959 1.01510 1.69741 1.11437 1.38757 1.40065
0.85136 0.77501 0.78597 0.78408 1.21724 1.23357 1.19375 0.90154
0.87483 0.85650 0.85208 0.89052 0.85635 0.85347 0.89341 0.84043
0.81819 0.75156 0.95039 0.92453 0.94365 0.91380 0.90209 0.91950
0.94706
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.20 11.33 127.77 1.45 2.65 16
2 N -0.37 -9.54 4.04 -359.85 -1.45 -10.99 16
3 N -0.34 -10.02 12.24 -51.34 -0.63 -10.65 16
4 C 0.24 7.40 7.69 138.63 1.07 8.46 16
5 C -0.10 -2.34 6.33 -11.54 -0.07 -2.41 16
6 C -0.15 -2.65 10.13 30.59 0.31 -2.34 16
7 C -0.14 -2.38 10.23 30.59 0.31 -2.06 16
8 N -0.57 -19.14 11.19 -179.73 -2.01 -21.15 16
9 C 0.30 8.36 6.48 138.23 0.90 9.25 16
10 C -0.06 -1.27 6.03 29.10 0.18 -1.09 16
11 C 0.52 15.24 7.82 87.66 0.69 15.92 16
12 O -0.58 -22.46 15.76 -3.02 -0.05 -22.51 16
13 N -0.70 -20.17 5.10 -434.92 -2.22 -22.39 16
14 C 0.14 4.79 2.73 46.61 0.13 4.91 16
15 H 0.08 2.76 7.36 -2.39 -0.02 2.74 16
16 C -0.13 -5.43 6.22 32.21 0.20 -5.23 16
17 C 0.14 6.28 4.67 46.23 0.22 6.49 16
18 H 0.11 5.99 5.52 -2.39 -0.01 5.98 16
19 C -0.13 -5.10 6.58 32.87 0.22 -4.88 16
20 C -0.12 -3.80 6.49 32.87 0.21 -3.59 16
21 C 0.13 4.44 5.04 46.23 0.23 4.67 16
22 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16
23 N -0.61 -27.02 2.99 -615.26 -1.84 -28.86 16
24 C -0.21 -10.35 10.59 84.03 0.89 -9.46 16
25 H 0.09 4.17 7.83 -2.91 -0.02 4.14 16
26 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16
27 N -0.95 -54.17 10.46 21.65 0.23 -53.95 16
28 Si 0.97 43.16 29.55 68.60 2.03 45.19 16
29 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16
30 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16
31 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16
34 H 0.13 0.88 7.10 -2.38 -0.02 0.86 16
35 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16
36 H 0.09 1.83 7.87 -2.39 -0.02 1.81 16
37 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16
38 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16
39 H 0.09 1.61 8.14 -2.38 -0.02 1.60 16
40 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16
41 H 0.16 1.71 7.12 -2.39 -0.02 1.70 16
42 H 0.41 10.72 8.62 -92.71 -0.80 9.92 16
43 H 0.03 1.42 7.98 -2.39 -0.02 1.40 16
44 H 0.06 2.22 7.81 -2.39 -0.02 2.20 16
45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
46 H 0.07 2.30 7.81 -2.38 -0.02 2.28 16
47 H 0.08 2.13 7.82 -2.39 -0.02 2.11 16
48 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
49 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16
Total: -1.00 -77.16 399.07 1.61 -75.55
By element:
Atomic # 1 Polarization: 31.50 SS G_CDS: 0.18 Total: 31.67 kcal
Atomic # 6 Polarization: 10.70 SS G_CDS: 7.38 Total: 18.09 kcal
Atomic # 7 Polarization: -140.06 SS G_CDS: -7.92 Total: -147.99 kcal
Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal
Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal
Total: -77.16 1.61 -75.55 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098443741.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 181.076 kcal
(2) G-P(sol) polarization free energy of solvation -77.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.552 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.524 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds