Wall clock time and date at job start Wed Apr 1 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48499 * 109.46899 * 269.99808 * 3 2 1 5 5 H 1.48498 * 109.47324 * 29.99370 * 3 2 1 6 6 H 1.48496 * 109.47157 * 149.99678 * 3 2 1 7 7 C 1.38812 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00322 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99564 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99901 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47109 * 174.92211 * 10 9 7 12 12 C 1.52999 * 112.84709 * 291.44840 * 11 10 9 13 13 H 1.08999 * 109.70555 * 47.21120 * 12 11 10 14 14 C 1.53628 * 109.66002 * 167.80091 * 12 11 10 15 15 C 1.53043 * 109.23853 * 174.54897 * 14 12 11 16 16 C 1.53035 * 109.53888 * 298.50767 * 15 14 12 17 17 C 1.53193 * 109.30990 * 61.36667 * 16 15 14 18 18 N 1.46917 * 109.58701 * 286.85004 * 12 11 10 19 19 C 1.34777 * 120.63116 * 6.63040 * 18 12 11 20 20 O 1.21279 * 120.00024 * 0.43487 * 19 18 12 21 21 C 1.50707 * 120.00088 * 180.42971 * 19 18 12 22 22 C 1.50697 * 109.46931 * 180.02562 * 21 19 18 23 23 C 1.34852 * 125.89420 * 85.00377 * 22 21 19 24 24 C 1.40888 * 107.42200 * 179.97438 * 23 22 21 25 25 C 1.34855 * 107.41376 * 0.02562 * 24 23 22 26 26 N 1.36341 * 108.21849 * 359.73575 * 25 24 23 27 27 H 0.97006 * 125.63667 * 180.27103 * 26 25 24 28 28 C 1.53783 * 113.69050 * 62.71597 * 11 10 9 29 29 C 1.53784 * 87.08218 * 89.12705 * 28 11 10 30 30 C 1.53781 * 113.61250 * 160.25311 * 11 10 9 31 31 H 0.96995 * 120.00694 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00299 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47285 * 54.92106 * 10 9 7 34 34 H 1.09002 * 109.46719 * 294.92256 * 10 9 7 35 35 H 1.08997 * 109.63834 * 54.56066 * 14 12 11 36 36 H 1.08999 * 109.46037 * 294.42729 * 14 12 11 37 37 H 1.09002 * 109.46176 * 178.48843 * 15 14 12 38 38 H 1.08999 * 109.46072 * 58.53079 * 15 14 12 39 39 H 1.08996 * 109.50219 * 301.41907 * 16 15 14 40 40 H 1.08998 * 109.50138 * 181.31578 * 16 15 14 41 41 H 1.09005 * 109.58448 * 185.57466 * 17 16 15 42 42 H 1.09004 * 109.70594 * 65.22362 * 17 16 15 43 43 H 1.08996 * 109.46980 * 299.99811 * 21 19 18 44 44 H 1.09003 * 109.46754 * 60.00363 * 21 19 18 45 45 H 1.08002 * 126.28840 * 359.97438 * 23 22 21 46 46 H 1.07999 * 126.29654 * 180.02562 * 24 23 22 47 47 H 1.08007 * 125.88622 * 180.02562 * 25 24 23 48 48 H 1.09000 * 113.61591 * 203.67717 * 28 11 10 49 49 H 1.09004 * 113.61685 * 334.57859 * 28 11 10 50 50 H 1.08995 * 113.61234 * 270.88746 * 29 28 11 51 51 H 1.08995 * 113.61703 * 139.98089 * 29 28 11 52 52 H 1.08997 * 113.61371 * 25.34562 * 30 11 10 53 53 H 1.09003 * 113.61318 * 156.25720 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6116 -2.1940 -0.1260 12 6 5.9989 -1.6377 -1.4976 13 1 5.3171 -0.8334 -1.7739 14 6 7.4388 -1.1043 -1.4513 15 6 7.8634 -0.6759 -2.8578 16 6 7.8284 -1.8860 -3.7939 17 6 6.3981 -2.4301 -3.8653 18 7 5.9295 -2.7087 -2.5009 19 6 5.4400 -3.9221 -2.1774 20 8 5.0443 -4.1357 -1.0511 21 6 5.3843 -5.0134 -3.2153 22 6 4.7997 -6.2599 -2.6026 23 6 3.4863 -6.5428 -2.4870 24 6 3.3792 -7.8000 -1.8601 25 6 4.6313 -8.2372 -1.6159 26 7 5.5075 -7.2986 -2.0745 27 1 6.4747 -7.3589 -2.0304 28 6 6.1939 -1.3928 1.0505 29 6 6.4478 -2.7428 1.7419 30 6 6.4955 -3.3645 0.3360 31 1 -0.4851 0.8399 -0.0004 32 1 3.8646 -0.3620 0.0014 33 1 3.7828 -3.0806 -0.8402 34 1 3.9185 -3.0022 0.9329 35 1 8.1077 -1.8861 -1.0917 36 1 7.4871 -0.2470 -0.7799 37 1 8.8752 -0.2717 -2.8245 38 1 7.1794 0.0884 -3.2267 39 1 8.4936 -2.6606 -3.4122 40 1 8.1533 -1.5852 -4.7899 41 1 6.3857 -3.3494 -4.4509 42 1 5.7466 -1.6910 -4.3316 43 1 4.7596 -4.6910 -4.0482 44 1 6.3913 -5.2233 -3.5761 45 1 2.6670 -5.9201 -2.8147 46 1 2.4628 -8.3184 -1.6193 47 1 4.8947 -9.1720 -1.1433 48 1 7.1065 -0.8515 0.8010 49 1 5.4587 -0.7716 1.5622 50 1 5.6082 -3.0895 2.3443 51 1 7.3987 -2.7896 2.2725 52 1 6.0037 -4.3351 0.2710 53 1 7.4906 -3.3623 -0.1087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105579930.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:05 Heat of formation + Delta-G solvation = 86.485859 kcal Electronic energy + Delta-G solvation = -33303.551079 eV Core-core repulsion = 29371.599181 eV Total energy + Delta-G solvation = -3931.951899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.59022 -41.76348 -39.14650 -38.24885 -36.15033 -33.91260 -33.36728 -32.77554 -31.75950 -31.73686 -28.91469 -27.60861 -26.63185 -26.09181 -24.87579 -23.82285 -23.30033 -21.77173 -21.40224 -21.08042 -20.42253 -19.81090 -18.48990 -18.36310 -18.02064 -17.06578 -16.76560 -16.63858 -16.22260 -15.67900 -15.39394 -15.17345 -14.88794 -14.88692 -14.71960 -14.57129 -14.46554 -14.25147 -14.00718 -13.83553 -13.79447 -13.54191 -13.28075 -13.08505 -12.98101 -12.87079 -12.62590 -12.48849 -12.33139 -12.25437 -11.96953 -11.88283 -11.63933 -11.55578 -11.41471 -11.01308 -10.98523 -10.77555 -10.73865 -9.95830 -9.65854 -9.27535 -8.97630 -8.84110 -8.02766 -5.33089 1.30847 1.35519 1.36239 1.44024 1.83908 2.07066 2.32459 2.46390 2.58763 3.27702 3.58027 3.68623 3.76639 3.87333 3.89755 4.01689 4.03847 4.10751 4.13209 4.22692 4.29303 4.29908 4.44766 4.50423 4.52722 4.59214 4.69193 4.72315 4.80962 4.81401 4.84196 4.86081 4.91491 5.03321 5.07122 5.10453 5.14880 5.17900 5.20960 5.29779 5.40837 5.41609 5.46733 5.48353 5.56025 5.66369 5.68189 5.83150 5.84404 6.12753 6.22548 6.26774 6.67745 6.91393 7.09045 7.51835 7.91331 8.10574 9.20198 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008828 B = 0.004861 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.965809 B = 5758.956223 C = 7156.279287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.226 4.226 8 H 0.041 0.959 9 N -0.757 5.757 10 C 0.197 3.803 11 C -0.056 4.056 12 C 0.163 3.837 13 H 0.042 0.958 14 C -0.125 4.125 15 C -0.121 4.121 16 C -0.124 4.124 17 C 0.099 3.901 18 N -0.603 5.603 19 C 0.469 3.531 20 O -0.507 6.507 21 C -0.059 4.059 22 C 0.036 3.964 23 C -0.219 4.219 24 C -0.233 4.233 25 C -0.004 4.004 26 N -0.542 5.542 27 H 0.426 0.574 28 C -0.148 4.148 29 C -0.142 4.142 30 C -0.097 4.097 31 H 0.257 0.743 32 H 0.360 0.640 33 H 0.053 0.947 34 H -0.018 1.018 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.117 0.883 44 H 0.131 0.869 45 H 0.109 0.891 46 H 0.131 0.869 47 H 0.194 0.806 48 H 0.108 0.892 49 H 0.037 0.963 50 H 0.049 0.951 51 H 0.080 0.920 52 H 0.088 0.912 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.250 -10.717 -10.826 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.357 4.357 8 H 0.059 0.941 9 N -0.403 5.403 10 C 0.073 3.927 11 C -0.057 4.057 12 C 0.059 3.941 13 H 0.060 0.940 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.162 4.162 17 C -0.023 4.023 18 N -0.336 5.336 19 C 0.259 3.741 20 O -0.385 6.385 21 C -0.099 4.099 22 C -0.077 4.077 23 C -0.244 4.244 24 C -0.258 4.258 25 C -0.136 4.136 26 N -0.138 5.138 27 H 0.265 0.735 28 C -0.185 4.185 29 C -0.180 4.180 30 C -0.134 4.134 31 H 0.066 0.934 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.000 1.000 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.135 0.865 44 H 0.149 0.851 45 H 0.127 0.873 46 H 0.149 0.851 47 H 0.211 0.789 48 H 0.126 0.874 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.099 0.901 52 H 0.105 0.895 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 26.011 -10.975 -10.247 30.033 hybrid contribution -0.790 1.193 0.500 1.515 sum 25.221 -9.782 -9.747 28.754 Atomic orbital electron populations 1.69906 1.07158 1.26556 1.60327 1.25506 0.96149 1.01129 1.02927 0.85372 0.78478 0.79421 0.78347 1.19849 1.21933 1.18086 1.18989 0.83112 0.92972 1.40678 0.94084 1.42980 1.02196 1.04547 1.90584 1.21074 0.89481 0.85032 0.97107 1.21816 0.93832 0.97205 0.92831 1.21063 0.96931 0.88700 0.87368 0.93993 1.22121 0.94268 1.01260 0.98601 1.21551 1.02060 0.98138 0.94093 1.21867 0.95482 0.97830 1.00999 1.22014 0.95842 1.02779 0.81680 1.47889 1.63258 1.10698 1.11803 1.20880 0.79770 0.83859 0.89587 1.90847 1.44604 1.81399 1.21668 1.20169 1.04491 0.88295 0.96965 1.19647 0.91090 0.91571 1.05426 1.20768 0.95646 0.99095 1.08929 1.21085 0.97984 0.98109 1.08591 1.22163 0.88813 0.97031 1.05563 1.41815 1.09235 1.15511 1.47232 0.73545 1.23303 1.00955 0.96876 0.97412 1.22792 1.00831 0.96773 0.97576 1.23351 0.97576 0.98752 0.93685 0.93404 0.80703 0.92991 1.00025 0.90340 0.90816 0.90009 0.92741 0.90648 0.88661 0.87155 0.92166 0.86520 0.85124 0.87305 0.85062 0.78864 0.87402 0.94381 0.93247 0.90103 0.89467 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -67.43 13.97 21.65 0.30 -67.12 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 3 Si 0.96 48.52 27.74 68.60 1.90 50.42 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 7 C -0.23 -14.39 10.47 84.03 0.88 -13.51 16 8 H 0.04 2.93 8.06 -2.91 -0.02 2.90 16 9 N -0.76 -40.09 4.85 -343.44 -1.66 -41.75 16 10 C 0.20 9.17 4.35 86.38 0.38 9.54 16 11 C -0.06 -1.88 0.20 -51.65 -0.01 -1.89 16 12 C 0.16 4.60 2.63 45.12 0.12 4.72 16 13 H 0.04 1.47 7.70 -2.39 -0.02 1.45 16 14 C -0.12 -2.45 4.24 30.82 0.13 -2.31 16 15 C -0.12 -1.76 5.88 30.62 0.18 -1.58 16 16 C -0.12 -1.33 6.08 30.67 0.19 -1.14 16 17 C 0.10 1.47 6.34 86.36 0.55 2.02 16 18 N -0.60 -14.12 2.94 -794.22 -2.34 -16.46 16 19 C 0.47 12.35 6.57 87.66 0.58 12.93 16 20 O -0.51 -17.51 6.18 -3.03 -0.02 -17.53 16 21 C -0.06 -1.10 4.58 29.10 0.13 -0.97 16 22 C 0.04 0.88 5.66 41.08 0.23 1.11 16 23 C -0.22 -6.79 10.76 22.14 0.24 -6.55 16 24 C -0.23 -6.47 10.86 22.14 0.24 -6.23 16 25 C 0.00 -0.08 11.94 83.21 0.99 0.91 16 26 N -0.54 -10.28 6.07 -182.76 -1.11 -11.39 16 27 H 0.43 4.97 8.96 -92.70 -0.83 4.14 16 28 C -0.15 -4.63 6.64 31.12 0.21 -4.43 16 29 C -0.14 -4.23 7.73 31.12 0.24 -3.99 16 30 C -0.10 -2.78 5.27 31.12 0.16 -2.62 16 31 H 0.26 16.58 8.31 -92.71 -0.77 15.80 16 32 H 0.36 18.01 4.82 -92.71 -0.45 17.56 16 33 H 0.05 2.65 5.12 -27.66 -0.14 2.51 16 34 H -0.02 -0.96 7.33 -2.39 -0.02 -0.97 16 35 H 0.08 1.39 6.38 -2.39 -0.02 1.38 16 36 H 0.07 1.47 6.50 -2.39 -0.02 1.46 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.11 1.00 5.93 -2.38 -0.01 0.98 16 42 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.12 2.00 7.92 -2.39 -0.02 1.98 16 44 H 0.13 1.31 7.72 -2.39 -0.02 1.29 16 45 H 0.11 3.72 8.06 -2.91 -0.02 3.70 16 46 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 47 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 48 H 0.11 2.67 5.58 -2.39 -0.01 2.66 16 49 H 0.04 1.43 7.56 -2.38 -0.02 1.41 16 50 H 0.05 1.73 7.63 -2.39 -0.02 1.72 16 51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.09 2.96 5.52 -32.73 -0.18 2.78 16 53 H 0.09 2.00 6.41 -2.39 -0.02 1.99 16 Total: -1.00 -84.96 388.68 2.27 -82.69 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.70 Total: 38.88 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 5.90 Total: -17.73 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -4.81 Total: -136.73 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.02 Total: -17.53 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.90 Total: 50.42 kcal Total: -84.96 2.27 -82.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105579930.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.174 kcal (2) G-P(sol) polarization free energy of solvation -84.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds