Wall clock time and date at job start Wed Apr 1 2020 04:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48498 * 109.46936 * 240.00090 * 3 2 1 5 5 H 1.48499 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46701 * 120.00566 * 3 2 1 7 7 C 1.38817 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99606 * 179.72436 * 7 2 1 9 9 N 1.36934 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99958 * 173.97503 * 9 7 2 11 11 C 1.53003 * 109.47377 * 62.83744 * 10 9 7 12 12 N 1.46501 * 109.46803 * 54.63316 * 11 10 9 13 13 C 1.34772 * 120.00156 * 176.62311 * 12 11 10 14 14 O 1.21628 * 119.99710 * 359.97438 * 13 12 11 15 15 C 1.47261 * 120.00402 * 179.97438 * 13 12 11 16 16 C 1.46753 * 126.96753 * 359.68282 * 15 13 12 17 17 C 1.34491 * 106.36532 * 179.81975 * 16 15 13 18 18 N 1.36432 * 109.01203 * 0.43253 * 17 16 15 19 19 C 1.35212 * 109.89432 * 359.72980 * 18 17 16 20 20 C 1.51003 * 124.54154 * 179.97438 * 19 18 17 21 21 C 1.53395 * 108.25509 * 344.32682 * 20 19 18 22 22 C 1.53166 * 109.04583 * 48.45950 * 21 20 19 23 23 C 1.47016 * 126.01246 * 179.73838 * 18 17 16 24 24 C 1.53005 * 109.46877 * 302.83955 * 10 9 7 25 25 C 1.53001 * 109.47149 * 300.00381 * 24 10 9 26 26 C 1.52997 * 109.46954 * 299.99640 * 25 24 10 27 27 C 1.53005 * 109.46899 * 60.00206 * 26 25 24 28 28 C 1.52997 * 109.47311 * 182.84263 * 10 9 7 29 29 H 0.97000 * 119.99724 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00468 * 353.96545 * 9 7 2 31 31 H 1.09001 * 109.47059 * 174.63112 * 11 10 9 32 32 H 1.08999 * 109.46910 * 294.63435 * 11 10 9 33 33 H 0.96999 * 119.99896 * 356.61846 * 12 11 10 34 34 H 1.08006 * 126.81410 * 359.97438 * 16 15 13 35 35 H 1.08001 * 125.49649 * 180.13392 * 17 16 15 36 36 H 1.08993 * 109.70785 * 104.02247 * 20 19 18 37 37 H 1.09004 * 109.70267 * 224.64020 * 20 19 18 38 38 H 1.09003 * 109.54188 * 168.32892 * 21 20 19 39 39 H 1.08998 * 109.54466 * 288.59011 * 21 20 19 40 40 H 1.09000 * 109.45768 * 50.44416 * 22 21 20 41 41 H 1.08992 * 109.46197 * 170.41037 * 22 21 20 42 42 H 1.09001 * 109.56407 * 42.55315 * 23 18 17 43 43 H 1.09004 * 109.56215 * 282.21439 * 23 18 17 44 44 H 1.09006 * 109.47053 * 59.99771 * 24 10 9 45 45 H 1.08997 * 109.47078 * 179.97438 * 24 10 9 46 46 H 1.08996 * 109.47050 * 179.97438 * 25 24 10 47 47 H 1.08997 * 109.47521 * 59.99794 * 25 24 10 48 48 H 1.09000 * 109.47612 * 300.00494 * 26 25 24 49 49 H 1.08995 * 109.47228 * 180.02562 * 26 25 24 50 50 H 1.09008 * 109.46577 * 180.02562 * 27 26 25 51 51 H 1.08997 * 109.47078 * 60.00152 * 27 26 25 52 52 H 1.08998 * 109.47200 * 179.97438 * 28 10 9 53 53 H 1.08996 * 109.47026 * 299.99722 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0050 9 7 1.3256 -2.3881 -0.0005 10 6 2.0519 -3.6533 -0.1343 11 6 2.9907 -3.8313 1.0607 12 7 2.2247 -3.7181 2.3044 13 6 2.8344 -3.9094 3.4911 14 8 4.0203 -4.1765 3.5294 15 6 2.0646 -3.7952 4.7413 16 6 0.6384 -3.4757 4.8735 17 6 0.3689 -3.4833 6.1911 18 7 1.5126 -3.7711 6.8770 19 6 2.5337 -3.9589 6.0108 20 6 3.9494 -4.2938 6.4157 21 6 4.1048 -3.9944 7.9121 22 6 2.9330 -4.6234 8.6720 23 6 1.6429 -3.8689 8.3381 24 6 2.8697 -3.6376 -1.4273 25 6 1.9310 -3.4595 -2.6223 26 6 0.9331 -4.6185 -2.6641 27 6 0.1153 -4.6342 -1.3711 28 6 1.0540 -4.8123 -0.1760 29 1 -0.4850 0.8401 0.0004 30 1 0.3596 -2.3904 0.0881 31 1 3.4598 -4.8139 1.0110 32 1 3.7601 -3.0596 1.0364 33 1 1.2788 -3.5055 2.2738 34 1 -0.0573 -3.2767 4.0717 35 1 -0.5961 -3.2878 6.6350 36 1 4.1447 -5.3499 6.2299 37 1 4.6491 -3.6839 5.8442 38 1 5.0424 -4.4172 8.2731 39 1 4.1049 -2.9159 8.0701 40 1 2.8293 -5.6682 8.3791 41 1 3.1215 -4.5639 9.7438 42 1 0.7885 -4.4095 8.7454 43 1 1.6828 -2.8683 8.7688 44 1 3.5806 -2.8118 -1.3976 45 1 3.4105 -4.5787 -1.5266 46 1 2.5136 -3.4479 -3.5434 47 1 1.3906 -2.5182 -2.5228 48 1 1.4735 -5.5599 -2.7636 49 1 0.2647 -4.4919 -3.5157 50 1 -0.5953 -5.4603 -1.4007 51 1 -0.4251 -3.6929 -1.2715 52 1 1.5944 -5.7536 -0.2760 53 1 0.4714 -4.8235 0.7451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115575877.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:00 Heat of formation + Delta-G solvation = -19.230702 kcal Electronic energy + Delta-G solvation = -31711.840799 eV Core-core repulsion = 27775.304686 eV Total energy + Delta-G solvation = -3936.536113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.48348 -40.69557 -39.47264 -36.81614 -35.79710 -34.97006 -33.51663 -32.74682 -31.54532 -30.54064 -30.12331 -28.80217 -26.60199 -25.68524 -25.07516 -23.74733 -23.18956 -22.08227 -21.72562 -20.77551 -19.85098 -19.46771 -18.97004 -18.41583 -16.90136 -16.77048 -16.59472 -16.40769 -15.98796 -15.71442 -15.51275 -15.22664 -15.11887 -15.04624 -14.87931 -14.70919 -14.38455 -14.27230 -14.15714 -13.70697 -13.46667 -13.39210 -13.24086 -12.97668 -12.88694 -12.77559 -12.58001 -12.51219 -12.46339 -12.07438 -11.96220 -11.87291 -11.84437 -11.73310 -11.66164 -11.29967 -11.07844 -10.86269 -10.68796 -10.63963 -9.88978 -9.42916 -9.07383 -8.88294 -7.85499 -5.09564 0.82050 1.44839 1.46127 1.50858 1.53695 1.89569 2.56529 2.63452 2.72628 3.46937 3.61241 3.74383 3.81861 3.83536 3.88159 3.95122 4.03442 4.11821 4.15662 4.32499 4.39042 4.41182 4.43241 4.46647 4.50457 4.68643 4.70452 4.77390 4.78530 4.82628 4.84896 4.87587 4.93432 4.97466 4.99704 5.03677 5.08481 5.10767 5.19564 5.22896 5.27460 5.29425 5.48328 5.51073 5.52832 5.61861 5.63594 5.76832 5.82714 5.83100 6.12790 6.37235 6.41578 6.85191 7.45771 7.48489 8.18727 8.45459 9.36718 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.003349 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.623116 B = 8357.971769 C = 9470.202601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.946 3.054 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.207 4.207 8 H 0.058 0.942 9 N -0.708 5.708 10 C 0.191 3.809 11 C 0.125 3.875 12 N -0.695 5.695 13 C 0.577 3.423 14 O -0.601 6.601 15 C -0.268 4.268 16 C -0.190 4.190 17 C -0.004 4.004 18 N -0.441 5.441 19 C 0.098 3.902 20 C -0.052 4.052 21 C -0.123 4.123 22 C -0.130 4.130 23 C 0.094 3.906 24 C -0.113 4.113 25 C -0.105 4.105 26 C -0.107 4.107 27 C -0.111 4.111 28 C -0.107 4.107 29 H 0.246 0.754 30 H 0.377 0.623 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.403 0.597 34 H 0.142 0.858 35 H 0.202 0.798 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.041 0.959 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.075 0.925 51 H 0.043 0.957 52 H 0.081 0.919 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -13.851 15.088 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.777 3.223 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.340 4.340 8 H 0.076 0.924 9 N -0.348 5.348 10 C 0.100 3.900 11 C -0.002 4.002 12 N -0.343 5.343 13 C 0.367 3.633 14 O -0.485 6.485 15 C -0.278 4.278 16 C -0.214 4.214 17 C -0.130 4.130 18 N -0.118 5.118 19 C -0.020 4.020 20 C -0.090 4.090 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.025 4.025 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.145 4.145 29 H 0.055 0.945 30 H 0.210 0.790 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.239 0.761 34 H 0.160 0.840 35 H 0.218 0.782 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.114 0.886 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.062 0.938 52 H 0.100 0.900 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.387 -13.912 15.441 20.830 hybrid contribution -0.243 1.854 -0.535 1.945 sum 1.144 -12.059 14.906 19.207 Atomic orbital electron populations 1.69748 1.05699 1.25268 1.60265 1.25137 0.96005 0.99497 1.04823 0.85631 0.77489 0.81707 0.77435 1.21004 1.22234 1.22159 1.19143 0.90561 0.85119 1.39150 0.92356 1.42435 1.05761 0.99967 1.86672 1.20005 0.91673 0.86866 0.91406 1.21706 0.94530 0.99125 0.84829 1.45528 1.13739 1.70115 1.04939 1.17797 0.85991 0.75717 0.83780 1.90638 1.16808 1.52811 1.88272 1.20167 0.95848 1.19707 0.92073 1.22186 0.93832 1.08292 0.97051 1.22084 0.91977 1.07786 0.91167 1.44216 1.06967 1.52925 1.07676 1.20461 0.91830 1.01488 0.88198 1.20419 0.88826 1.02174 0.97615 1.21716 1.00347 1.01546 0.92430 1.21900 0.92209 0.99689 1.02911 1.22474 1.01497 1.03452 0.75103 1.21777 0.97756 1.00472 0.95316 1.21297 0.97397 0.98887 0.96738 1.21444 0.97524 0.98250 0.97181 1.21435 0.97705 1.01250 0.94515 1.21643 0.97142 0.97184 0.98497 0.94479 0.78956 0.91936 0.95411 0.76092 0.84034 0.78150 0.90045 0.91303 0.88724 0.91670 0.90972 0.86331 0.86581 0.88635 0.94378 0.90948 0.92359 0.94058 0.90756 0.92082 0.90657 0.93793 0.90026 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.68 13.07 21.65 0.28 -56.39 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 3 Si 0.95 47.46 29.55 68.60 2.03 49.49 16 4 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 7 C -0.21 -11.11 8.70 84.04 0.73 -10.38 16 8 H 0.06 3.21 6.77 -2.91 -0.02 3.19 16 9 N -0.71 -32.71 3.40 -303.34 -1.03 -33.75 16 10 C 0.19 7.16 0.41 3.61 0.00 7.16 16 11 C 0.12 4.97 4.37 86.38 0.38 5.35 16 12 N -0.69 -27.76 5.09 -466.52 -2.37 -30.14 16 13 C 0.58 23.98 7.81 86.62 0.68 24.66 16 14 O -0.60 -27.58 15.34 -4.12 -0.06 -27.65 16 15 C -0.27 -9.63 6.28 -19.12 -0.12 -9.75 16 16 C -0.19 -5.87 10.56 23.64 0.25 -5.62 16 17 C 0.00 -0.09 11.40 83.12 0.95 0.86 16 18 N -0.44 -9.93 3.11 -508.01 -1.58 -11.51 16 19 C 0.10 2.93 6.57 41.69 0.27 3.20 16 20 C -0.05 -1.36 5.32 30.08 0.16 -1.20 16 21 C -0.12 -1.96 5.98 30.78 0.18 -1.77 16 22 C -0.13 -1.37 5.92 30.70 0.18 -1.19 16 23 C 0.09 1.14 6.90 86.33 0.60 1.73 16 24 C -0.11 -4.05 4.52 30.60 0.14 -3.91 16 25 C -0.11 -3.62 5.77 30.59 0.18 -3.45 16 26 C -0.11 -3.00 5.92 30.59 0.18 -2.82 16 27 C -0.11 -3.32 5.75 30.60 0.18 -3.14 16 28 C -0.11 -3.30 4.65 30.59 0.14 -3.15 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.38 18.67 6.63 -92.71 -0.61 18.06 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.03 1.28 7.50 -2.39 -0.02 1.26 16 33 H 0.40 15.88 6.52 -92.71 -0.60 15.27 16 34 H 0.14 4.35 7.70 -2.91 -0.02 4.33 16 35 H 0.20 3.05 8.06 -2.91 -0.02 3.02 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.17 7.40 -2.38 -0.02 2.16 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 40 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 41 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.04 1.53 7.23 -2.38 -0.02 1.51 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.04 1.77 7.60 -2.39 -0.02 1.75 16 48 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 51 H 0.04 1.59 6.92 -2.39 -0.02 1.57 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.06 1.79 7.28 -2.39 -0.02 1.77 16 Total: -1.00 -71.96 405.07 2.49 -69.47 By element: Atomic # 1 Polarization: 47.25 SS G_CDS: -0.31 Total: 46.94 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.54 Total: -6.46 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -4.70 Total: -131.78 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.06 Total: -27.65 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -71.96 2.49 -69.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115575877.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.240 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds