Wall clock time and date at job start Wed Apr 1 2020 03:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35966 * 126.07364 * 2 1 4 4 C 1.35704 * 107.55887 * 180.02562 * 3 2 1 5 5 N 1.40796 * 126.07272 * 179.97438 * 4 3 2 6 6 C 1.46952 * 111.00086 * 180.02562 * 5 4 3 7 7 C 1.53055 * 109.36525 * 176.81362 * 6 5 4 8 8 N 1.46955 * 109.38252 * 58.38904 * 7 6 5 9 9 C 1.38578 * 110.99986 * 176.82346 * 8 7 6 10 10 N 1.31212 * 126.47371 * 36.37072 * 9 8 7 11 11 N 1.28526 * 109.86175 * 179.97438 * 10 9 8 12 12 C 1.30295 * 110.05376 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.34682 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47576 * 90.01878 * 13 12 11 15 15 C 1.50697 * 109.47020 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00556 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99903 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00017 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47265 * 89.99688 * 19 17 15 21 21 H 1.48501 * 109.47119 * 210.00161 * 19 17 15 22 22 H 1.48503 * 109.46731 * 329.99728 * 19 17 15 23 23 N 1.36453 * 126.47052 * 216.05761 * 9 8 7 24 24 C 1.46494 * 127.14184 * 0.03547 * 23 9 8 25 25 C 1.46958 * 110.87873 * 300.71684 * 8 7 6 26 26 C 1.46960 * 110.99750 * 56.20202 * 5 4 3 27 27 C 1.40224 * 107.85855 * 0.22808 * 4 3 2 28 28 N 1.30857 * 108.36611 * 359.61147 * 27 4 3 29 29 H 1.08995 * 109.47039 * 90.00170 * 1 2 3 30 30 H 1.09008 * 109.47183 * 210.00212 * 1 2 3 31 31 H 1.08999 * 109.46802 * 329.99600 * 1 2 3 32 32 H 1.08000 * 126.21997 * 0.04055 * 3 2 1 33 33 H 1.08998 * 109.49247 * 56.84460 * 6 5 4 34 34 H 1.09008 * 109.50665 * 296.78771 * 6 5 4 35 35 H 1.09003 * 109.48693 * 178.36818 * 7 6 5 36 36 H 1.08994 * 109.48638 * 298.41303 * 7 6 5 37 37 H 1.09006 * 109.46305 * 210.01997 * 13 12 11 38 38 H 1.09000 * 109.46980 * 330.01543 * 13 12 11 39 39 H 1.08998 * 109.47102 * 300.00027 * 14 13 12 40 40 H 1.09000 * 109.47240 * 59.99824 * 14 13 12 41 41 H 0.97001 * 119.99756 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.47302 * 95.48209 * 24 23 9 43 43 H 1.08998 * 109.47601 * 215.48814 * 24 23 9 44 44 H 1.09003 * 109.46857 * 335.48956 * 24 23 9 45 45 H 1.09003 * 109.47242 * 299.31644 * 25 8 7 46 46 H 1.09004 * 109.50772 * 179.27431 * 25 8 7 47 47 H 1.09004 * 109.48684 * 303.15566 * 26 5 4 48 48 H 1.09000 * 109.48884 * 63.20000 * 26 5 4 49 49 H 1.08007 * 125.81318 * 179.75064 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2656 1.0990 0.0000 4 6 3.5524 0.6680 -0.0006 5 7 4.6999 1.4839 -0.0013 6 6 5.9241 0.6710 -0.0024 7 6 7.1443 1.5912 -0.0834 8 7 7.1324 2.5185 1.0566 9 6 8.2618 3.3215 1.0554 10 7 8.8691 3.8120 0.0007 11 7 9.8824 4.5127 0.3668 12 6 9.9813 4.5105 1.6660 13 6 11.0346 5.2137 2.4828 14 6 10.5560 6.6259 2.8252 15 6 11.6090 7.3289 3.6425 16 1 12.5280 6.8195 3.8923 17 6 11.3998 8.6228 4.0704 18 7 10.2809 9.2433 3.7658 19 14 12.7054 9.4944 5.0829 20 1 13.6395 10.2090 4.1764 21 1 12.0555 10.4707 5.9938 22 1 13.4590 8.4962 5.8836 23 7 8.9489 3.7564 2.1512 24 6 8.6459 3.4713 3.5558 25 6 5.9079 3.3311 1.0580 26 6 4.6874 2.4112 1.1387 27 6 3.5363 -0.7341 -0.0063 28 7 2.2898 -1.1322 -0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9371 2.1278 0.0006 33 1 5.9155 0.0018 -0.8627 34 1 5.9718 0.0836 0.9147 35 1 8.0543 0.9918 -0.0551 36 1 7.1110 2.1582 -1.0137 37 1 11.2123 4.6571 3.4030 38 1 11.9597 5.2727 1.9094 39 1 10.3782 7.1824 1.9050 40 1 9.6309 6.5670 3.3986 41 1 10.1339 10.1537 4.0666 42 1 9.2409 2.6216 3.8907 43 1 8.8848 4.3441 4.1635 44 1 7.5866 3.2361 3.6584 45 1 5.8603 3.9182 0.1408 46 1 5.9162 4.0005 1.9182 47 1 3.7773 3.0105 1.1100 48 1 4.7202 1.8442 2.0691 49 1 4.4049 -1.3761 -0.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121494971.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:53 Heat of formation + Delta-G solvation = 180.769112 kcal Electronic energy + Delta-G solvation = -29763.239292 eV Core-core repulsion = 25764.128230 eV Total energy + Delta-G solvation = -3999.111062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60105 -41.59640 -39.30205 -35.90791 -34.81892 -33.82777 -33.19389 -31.75576 -31.38681 -30.17722 -28.64059 -27.51078 -26.96653 -25.61864 -25.08748 -24.15464 -21.97779 -21.68062 -21.03791 -20.76902 -20.07630 -19.53031 -17.99866 -17.06901 -16.53343 -16.08303 -15.97955 -15.81893 -15.45021 -15.13576 -14.90665 -14.59592 -14.55506 -14.47349 -14.15536 -13.53953 -13.23622 -13.18273 -13.09959 -12.97390 -12.90854 -12.60532 -12.48628 -12.28167 -11.61173 -11.54652 -11.43533 -11.28391 -11.15952 -11.07801 -10.99440 -10.69423 -10.40402 -10.05484 -9.91363 -9.88124 -9.73807 -9.71562 -9.25180 -9.00479 -8.42875 -8.22677 -7.88492 -6.07372 -4.11528 1.49634 2.07539 2.11535 2.39343 2.51981 3.24919 3.28867 3.35441 3.37819 3.53373 3.72884 4.24349 4.39664 4.43010 4.53353 4.69917 4.73942 4.77335 4.86121 4.91074 4.97125 5.01963 5.06878 5.13465 5.19164 5.25263 5.28650 5.30146 5.40947 5.45380 5.48427 5.50767 5.61200 5.67887 5.71779 5.96283 5.99483 6.26967 6.32672 6.44877 6.47993 6.57744 6.66790 6.71803 6.91670 7.00008 7.32484 7.44036 7.52980 7.67010 7.90056 8.27533 8.94636 9.16847 9.53217 11.03682 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.001890 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.486203 B =14808.461136 C =15429.354879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.377 5.377 3 C 0.035 3.965 4 C -0.041 4.041 5 N -0.461 5.461 6 C 0.060 3.940 7 C 0.073 3.927 8 N -0.459 5.459 9 C 0.321 3.679 10 N -0.313 5.313 11 N -0.297 5.297 12 C 0.216 3.784 13 C -0.032 4.032 14 C 0.032 3.968 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.470 5.470 24 C 0.081 3.919 25 C 0.062 3.938 26 C 0.065 3.935 27 C 0.025 3.975 28 N -0.285 5.285 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.014 0.986 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.954 -20.083 -3.646 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.162 5.162 3 C -0.112 4.112 4 C -0.147 4.147 5 N -0.181 5.181 6 C -0.067 4.067 7 C -0.055 4.055 8 N -0.185 5.185 9 C -0.035 4.035 10 N -0.157 5.157 11 N -0.137 5.137 12 C -0.051 4.051 13 C -0.072 4.072 14 C -0.007 4.007 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.198 1.198 23 N -0.163 5.163 24 C -0.062 4.062 25 C -0.066 4.066 26 C -0.062 4.062 27 C -0.163 4.163 28 N -0.107 5.107 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.193 0.807 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.068 0.932 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.672 -20.597 -5.034 28.924 hybrid contribution 0.758 1.043 1.939 2.329 sum -18.914 -19.554 -3.095 27.380 Atomic orbital electron populations 1.21829 0.73835 1.04468 1.03372 1.48426 1.06454 1.03405 1.57962 1.22043 0.89849 0.93267 1.06033 1.18946 0.90805 0.91026 1.13905 1.59669 0.99866 1.17521 1.41003 1.22276 0.87607 0.94869 1.01985 1.22123 0.97897 0.93742 0.91692 1.58778 0.98399 1.16495 1.44838 1.22125 0.96531 1.00715 0.84142 1.74498 1.06206 1.11282 1.23717 1.74043 1.13710 1.16923 1.08986 1.25635 0.92103 0.95212 0.92157 1.20456 0.92992 0.97716 0.96008 1.19070 0.96573 0.87769 0.97242 1.21142 1.03109 0.98583 1.33409 0.92253 1.25019 0.95575 0.97453 0.96251 1.69973 1.24628 1.12618 1.45875 0.86547 0.81626 0.79501 0.80055 1.20512 1.21257 1.19799 1.46155 1.22580 1.39416 1.08150 1.22003 1.02874 1.03305 0.78034 1.22303 0.86803 0.94674 1.02834 1.22287 0.97789 0.94469 0.91699 1.23979 0.95536 0.94171 1.02643 1.77277 1.01342 1.08674 1.23379 0.90788 0.89336 0.89418 0.80723 0.89136 0.93025 0.89536 0.91374 0.91134 0.89214 0.95607 0.96807 0.92865 0.90504 0.88627 0.89435 0.92099 0.89786 0.89602 0.93166 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.42 11.48 59.85 0.69 1.11 16 2 N -0.38 -3.09 4.04 -67.79 -0.27 -3.36 16 3 C 0.03 0.28 10.87 -16.63 -0.18 0.10 16 4 C -0.04 -0.38 5.74 -83.90 -0.48 -0.86 16 5 N -0.46 -4.35 4.83 -171.14 -0.83 -5.17 16 6 C 0.06 0.53 4.54 -3.77 -0.02 0.51 16 7 C 0.07 0.82 5.28 -3.77 -0.02 0.80 16 8 N -0.46 -5.84 4.69 -174.36 -0.82 -6.66 16 9 C 0.32 5.31 6.74 -318.88 -2.15 3.16 16 10 N -0.31 -6.19 11.65 30.31 0.35 -5.83 16 11 N -0.30 -6.44 12.18 32.99 0.40 -6.04 16 12 C 0.22 4.27 7.32 -154.01 -1.13 3.15 16 13 C -0.03 -0.64 5.47 -27.89 -0.15 -0.79 16 14 C 0.03 0.79 4.95 -27.89 -0.14 0.66 16 15 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 N -0.47 -7.82 3.21 -121.46 -0.39 -8.21 16 24 C 0.08 1.00 10.88 59.84 0.65 1.66 16 25 C 0.06 0.70 5.54 -3.77 -0.02 0.68 16 26 C 0.06 0.58 5.47 -3.77 -0.02 0.56 16 27 C 0.02 0.23 10.79 -17.22 -0.19 0.04 16 28 N -0.28 -2.95 12.57 30.70 0.39 -2.56 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.18 0.96 7.90 -52.49 -0.41 0.55 16 33 H 0.09 0.68 7.62 -51.93 -0.40 0.29 16 34 H 0.05 0.44 8.01 -51.92 -0.42 0.02 16 35 H 0.09 0.97 8.13 -51.93 -0.42 0.54 16 36 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 37 H 0.07 1.26 7.98 -51.93 -0.41 0.85 16 38 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 44 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16 47 H 0.09 0.64 7.55 -51.93 -0.39 0.25 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.18 1.28 7.26 -52.48 -0.38 0.90 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -35.29 403.03 -10.80 -46.10 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.86 Total: -2.63 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -3.57 Total: -2.18 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.43 Total: -63.36 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.29 -10.80 -46.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494971.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.865 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds