Wall clock time and date at job start Wed Apr 1 2020 03:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99946 * 2 1 4 4 C 1.50702 * 120.00048 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.47114 * 94.99972 * 4 2 1 6 6 C 1.46905 * 111.00281 * 66.04490 * 5 4 2 7 7 C 1.38540 * 110.99923 * 190.00053 * 5 4 2 8 8 N 1.31248 * 126.37746 * 301.20985 * 7 5 4 9 9 N 1.28507 * 110.09601 * 180.31858 * 8 7 5 10 10 C 1.31224 * 109.95765 * 359.72582 * 9 8 7 11 11 C 1.47951 * 126.47253 * 179.97438 * 10 9 8 12 12 C 1.36705 * 126.93847 * 0.02562 * 11 10 9 13 13 N 1.35195 * 106.01849 * 179.97438 * 12 11 10 14 14 C 1.46512 * 125.72772 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46920 * 125.00175 * 14 13 12 16 16 C 1.50698 * 109.46875 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99922 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99957 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47326 * 89.99883 * 20 18 16 22 22 H 1.48502 * 109.47532 * 210.00365 * 20 18 16 23 23 H 1.48503 * 109.46863 * 330.00204 * 20 18 16 24 24 N 1.28635 * 108.54103 * 0.02562 * 13 12 11 25 25 N 1.28606 * 110.54286 * 359.75332 * 24 13 12 26 26 N 1.36597 * 126.37574 * 121.07064 * 7 5 4 27 27 C 1.46498 * 127.18078 * 359.95591 * 26 7 5 28 28 C 1.53000 * 109.47053 * 267.72957 * 27 26 7 29 29 H 1.08002 * 120.00037 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99761 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47495 * 269.99915 * 3 2 1 32 32 H 1.08997 * 109.47400 * 30.00424 * 3 2 1 33 33 H 1.09002 * 109.47450 * 150.00428 * 3 2 1 34 34 H 1.09001 * 109.47274 * 335.00060 * 4 2 1 35 35 H 1.09005 * 109.46970 * 214.99703 * 4 2 1 36 36 H 1.08996 * 109.46814 * 177.02614 * 6 5 4 37 37 H 1.09003 * 109.46818 * 297.02452 * 6 5 4 38 38 H 1.09003 * 109.46942 * 57.02205 * 6 5 4 39 39 H 1.08005 * 126.98568 * 359.97300 * 12 11 10 40 40 H 1.09000 * 109.46506 * 244.99856 * 14 13 12 41 41 H 1.08990 * 109.46864 * 5.00035 * 14 13 12 42 42 H 1.09004 * 109.47296 * 300.00156 * 15 14 13 43 43 H 1.09003 * 109.47323 * 59.99596 * 15 14 13 44 44 H 0.97008 * 119.99692 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.47452 * 147.72280 * 27 26 7 46 46 H 1.09001 * 109.46696 * 27.72400 * 27 26 7 47 47 H 1.08996 * 109.47262 * 59.99847 * 28 27 26 48 48 H 1.09004 * 109.46957 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.46915 * 299.99309 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3805 6 6 3.3709 -0.7113 -1.9503 7 6 2.9056 -2.9615 -1.4440 8 7 3.9556 -3.4265 -0.8085 9 7 4.1346 -4.6655 -1.0990 10 6 3.2057 -5.0686 -1.9336 11 6 3.0656 -6.4262 -2.5048 12 6 3.8729 -7.5039 -2.2691 13 7 3.3619 -8.5198 -3.0004 14 6 3.8980 -9.8818 -3.0647 15 6 2.7977 -10.8806 -2.7007 16 6 3.3490 -12.2816 -2.7674 17 1 4.3810 -12.4432 -3.0417 18 6 2.5362 -13.3568 -2.4774 19 7 1.2796 -13.1598 -2.1430 20 14 3.2196 -15.0933 -2.5595 21 1 3.7723 -15.4710 -1.2339 22 1 2.1335 -16.0359 -2.9297 23 1 4.2966 -15.1537 -3.5801 24 7 2.3260 -8.0897 -3.6302 25 7 2.1143 -6.8508 -3.3578 26 7 2.3875 -3.9907 -2.1775 27 6 1.2094 -3.9526 -3.0476 28 6 -0.0278 -4.3682 -2.2492 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1748 0.5138 34 1 1.4386 -2.0857 0.4334 35 1 2.9743 -1.1991 0.5889 36 1 3.6527 -1.0327 -2.9529 37 1 2.9117 0.2760 -2.0008 38 1 4.2589 -0.6671 -1.3197 39 1 4.7421 -7.5370 -1.6289 40 1 4.2534 -10.0849 -4.0749 41 1 4.7252 -9.9801 -2.3618 42 1 2.4422 -10.6774 -1.6905 43 1 1.9705 -10.7822 -3.4036 44 1 0.7076 -13.9164 -1.9393 45 1 1.3514 -4.6396 -3.8817 46 1 1.0725 -2.9409 -3.4294 47 1 -0.1698 -3.6810 -1.4151 48 1 -0.9044 -4.3393 -2.8965 49 1 0.1091 -5.3799 -1.8674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121886124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:03 Heat of formation + Delta-G solvation = 200.076409 kcal Electronic energy + Delta-G solvation = -29701.853119 eV Core-core repulsion = 25703.579284 eV Total energy + Delta-G solvation = -3998.273835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.18084 -42.74694 -38.54474 -35.81974 -35.24415 -34.84099 -32.98865 -31.90088 -30.59340 -30.10845 -28.98820 -28.47758 -27.05833 -25.68910 -25.23363 -24.21169 -23.42835 -22.58062 -21.18895 -20.74195 -20.02389 -18.88216 -17.66380 -17.14862 -16.66261 -16.28467 -16.09089 -15.91107 -15.61246 -15.16763 -15.03350 -14.58817 -14.36985 -14.13950 -14.03676 -13.79078 -13.51480 -13.35218 -13.18526 -12.53192 -12.43929 -12.41296 -12.04541 -11.91092 -11.87806 -11.70084 -11.52648 -11.42521 -11.36062 -11.20370 -11.01579 -10.96223 -10.66453 -10.49405 -10.28478 -10.15839 -9.92723 -9.55358 -9.49373 -9.46462 -9.09767 -8.57358 -8.44047 -6.21190 -4.28201 1.18983 1.65881 1.98885 2.16015 2.38517 2.74727 3.20928 3.21217 3.28490 3.30490 3.53141 3.89674 4.29563 4.33680 4.50721 4.55006 4.73248 4.78397 4.91823 4.97082 5.03468 5.05597 5.10522 5.14937 5.17020 5.20667 5.23232 5.34465 5.41469 5.44397 5.49263 5.52547 5.53781 5.63191 5.66418 5.76946 5.92283 5.99780 6.05781 6.07167 6.19722 6.23374 6.28679 6.42707 6.48341 6.79302 7.04131 7.33217 7.42186 7.72773 8.04317 8.57209 8.69106 8.76838 9.37826 10.89735 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.001908 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.008189 B =14671.115535 C =14985.184724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.121 4.121 4 C 0.103 3.897 5 N -0.459 5.459 6 C 0.030 3.970 7 C 0.338 3.662 8 N -0.305 5.305 9 N -0.273 5.273 10 C 0.285 3.715 11 C 0.020 3.980 12 C 0.006 3.994 13 N -0.265 5.265 14 C 0.109 3.891 15 C 0.014 3.986 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 N -0.057 5.057 25 N -0.269 5.269 26 N -0.447 5.447 27 C 0.109 3.891 28 C -0.160 4.160 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.199 0.801 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.025 0.975 43 H 0.038 0.962 44 H 0.265 0.735 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 27.152 1.319 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.178 4.178 4 C -0.024 4.024 5 N -0.184 5.184 6 C -0.117 4.117 7 C -0.018 4.018 8 N -0.151 5.151 9 N -0.116 5.116 10 C 0.018 3.982 11 C -0.120 4.120 12 C -0.150 4.150 13 N -0.057 5.057 14 C -0.009 4.009 15 C -0.023 4.023 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.038 5.038 25 N -0.137 5.137 26 N -0.139 5.139 27 C -0.013 4.013 28 C -0.218 4.218 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.216 0.784 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.126 0.874 46 H 0.115 0.885 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.205 26.639 0.957 26.657 hybrid contribution 0.623 -0.860 0.362 1.122 sum 0.828 25.779 1.318 25.826 Atomic orbital electron populations 1.23759 0.95097 1.02059 0.99492 1.21505 0.95364 0.94679 1.01336 1.20987 1.00263 0.94375 1.02134 1.21200 0.99684 0.95137 0.86365 1.58694 1.41811 0.96231 1.21671 1.22599 0.93878 0.95454 0.99780 1.22158 0.93466 0.89599 0.96568 1.74541 1.14662 1.04003 1.21852 1.74352 1.19910 1.04445 1.12934 1.21031 0.90985 0.87046 0.99147 1.18360 0.98558 0.90439 1.04595 1.23528 1.03033 0.86842 1.01595 1.47936 1.17954 1.12472 1.27302 1.22914 1.00042 0.73746 1.04194 1.19430 0.92757 0.91840 0.98323 1.20916 0.97454 0.90042 1.48775 0.91998 1.24998 0.94757 0.99633 0.94639 1.69973 1.05544 1.31592 1.45209 0.86465 0.78699 0.83607 0.78494 1.20465 1.21021 1.19662 1.78264 1.03747 1.04820 1.16942 1.75263 1.20961 1.03568 1.13900 1.46420 1.23588 1.08376 1.35505 1.21989 0.82205 1.04347 0.92771 1.22025 0.96578 1.02520 1.00634 0.88307 0.88196 0.91175 0.91728 0.91762 0.90087 0.92053 0.91359 0.89494 0.93470 0.78413 0.88693 0.88194 0.95670 0.94328 0.92544 0.87368 0.88542 0.92425 0.90219 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 13.89 29.01 0.40 -0.69 16 2 C -0.13 -0.90 5.10 -101.07 -0.52 -1.41 16 3 C -0.12 -0.63 9.02 36.00 0.32 -0.31 16 4 C 0.10 0.93 5.04 -4.97 -0.03 0.90 16 5 N -0.46 -4.60 4.77 -183.71 -0.88 -5.47 16 6 C 0.03 0.25 8.99 60.07 0.54 0.79 16 7 C 0.34 4.44 6.39 -318.69 -2.04 2.41 16 8 N -0.31 -4.73 12.15 30.34 0.37 -4.36 16 9 N -0.27 -4.54 12.21 32.60 0.40 -4.14 16 10 C 0.28 4.51 7.94 -153.82 -1.22 3.29 16 11 C 0.02 0.33 7.06 -83.21 -0.59 -0.26 16 12 C 0.01 0.09 11.54 -16.62 -0.19 -0.10 16 13 N -0.27 -4.71 3.43 -60.93 -0.21 -4.92 16 14 C 0.11 1.96 6.39 -4.03 -0.03 1.93 16 15 C 0.01 0.34 5.10 -27.88 -0.14 0.20 16 16 C -0.53 -13.73 9.11 -34.44 -0.31 -14.05 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 20 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 N -0.06 -1.11 12.87 60.35 0.78 -0.34 16 25 N -0.27 -4.78 10.81 33.01 0.36 -4.42 16 26 N -0.45 -6.09 2.83 -114.63 -0.32 -6.41 16 27 C 0.11 1.21 6.51 -4.04 -0.03 1.19 16 28 C -0.16 -1.69 10.24 37.16 0.38 -1.31 16 29 H 0.10 0.68 7.99 -52.49 -0.42 0.26 16 30 H 0.10 0.53 8.04 -52.49 -0.42 0.11 16 31 H 0.07 0.32 6.50 -51.93 -0.34 -0.02 16 32 H 0.06 0.29 8.06 -51.93 -0.42 -0.13 16 33 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 35 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.09 0.53 5.23 -51.93 -0.27 0.26 16 38 H 0.05 0.41 8.11 -51.93 -0.42 -0.02 16 39 H 0.20 2.50 8.06 -52.48 -0.42 2.07 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.10 1.53 8.06 -51.93 -0.42 1.11 16 42 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.11 1.31 6.81 -51.93 -0.35 0.96 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 413.01 15.07 6.22 6.22 Total: -1.00 -31.22 413.01 -8.76 -39.98 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.65 Total: -0.98 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.54 Total: -5.83 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 1.23 Total: -54.77 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.22 -8.76 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121886124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.053 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds