Wall clock time and date at job start Wed Apr 1 2020 03:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99946 * 2 1 4 4 C 1.50702 * 120.00048 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.47114 * 94.99972 * 4 2 1 6 6 C 1.46905 * 111.00281 * 66.04490 * 5 4 2 7 7 C 1.38540 * 110.99923 * 190.00053 * 5 4 2 8 8 N 1.31248 * 126.37746 * 301.20985 * 7 5 4 9 9 N 1.28507 * 110.09601 * 180.31858 * 8 7 5 10 10 C 1.31224 * 109.95765 * 359.72582 * 9 8 7 11 11 C 1.47951 * 126.47253 * 179.97438 * 10 9 8 12 12 C 1.36705 * 126.93847 * 0.02562 * 11 10 9 13 13 N 1.35195 * 106.01849 * 179.97438 * 12 11 10 14 14 C 1.46512 * 125.72772 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46920 * 125.00175 * 14 13 12 16 16 C 1.50698 * 109.46875 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99922 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99957 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47326 * 89.99883 * 20 18 16 22 22 H 1.48502 * 109.47532 * 210.00365 * 20 18 16 23 23 H 1.48503 * 109.46863 * 330.00204 * 20 18 16 24 24 N 1.28635 * 108.54103 * 0.02562 * 13 12 11 25 25 N 1.28606 * 110.54286 * 359.75332 * 24 13 12 26 26 N 1.36597 * 126.37574 * 121.07064 * 7 5 4 27 27 C 1.46498 * 127.18078 * 359.95591 * 26 7 5 28 28 C 1.53000 * 109.47053 * 267.72957 * 27 26 7 29 29 H 1.08002 * 120.00037 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99761 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47495 * 269.99915 * 3 2 1 32 32 H 1.08997 * 109.47400 * 30.00424 * 3 2 1 33 33 H 1.09002 * 109.47450 * 150.00428 * 3 2 1 34 34 H 1.09001 * 109.47274 * 335.00060 * 4 2 1 35 35 H 1.09005 * 109.46970 * 214.99703 * 4 2 1 36 36 H 1.08996 * 109.46814 * 177.02614 * 6 5 4 37 37 H 1.09003 * 109.46818 * 297.02452 * 6 5 4 38 38 H 1.09003 * 109.46942 * 57.02205 * 6 5 4 39 39 H 1.08005 * 126.98568 * 359.97300 * 12 11 10 40 40 H 1.09000 * 109.46506 * 244.99856 * 14 13 12 41 41 H 1.08990 * 109.46864 * 5.00035 * 14 13 12 42 42 H 1.09004 * 109.47296 * 300.00156 * 15 14 13 43 43 H 1.09003 * 109.47323 * 59.99596 * 15 14 13 44 44 H 0.97008 * 119.99692 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.47452 * 147.72280 * 27 26 7 46 46 H 1.09001 * 109.46696 * 27.72400 * 27 26 7 47 47 H 1.08996 * 109.47262 * 59.99847 * 28 27 26 48 48 H 1.09004 * 109.46957 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.46915 * 299.99309 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3805 6 6 3.3709 -0.7113 -1.9503 7 6 2.9056 -2.9615 -1.4440 8 7 3.9556 -3.4265 -0.8085 9 7 4.1346 -4.6655 -1.0990 10 6 3.2057 -5.0686 -1.9336 11 6 3.0656 -6.4262 -2.5048 12 6 3.8729 -7.5039 -2.2691 13 7 3.3619 -8.5198 -3.0004 14 6 3.8980 -9.8818 -3.0647 15 6 2.7977 -10.8806 -2.7007 16 6 3.3490 -12.2816 -2.7674 17 1 4.3810 -12.4432 -3.0417 18 6 2.5362 -13.3568 -2.4774 19 7 1.2796 -13.1598 -2.1430 20 14 3.2196 -15.0933 -2.5595 21 1 3.7723 -15.4710 -1.2339 22 1 2.1335 -16.0359 -2.9297 23 1 4.2966 -15.1537 -3.5801 24 7 2.3260 -8.0897 -3.6302 25 7 2.1143 -6.8508 -3.3578 26 7 2.3875 -3.9907 -2.1775 27 6 1.2094 -3.9526 -3.0476 28 6 -0.0278 -4.3682 -2.2492 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1748 0.5138 34 1 1.4386 -2.0857 0.4334 35 1 2.9743 -1.1991 0.5889 36 1 3.6527 -1.0327 -2.9529 37 1 2.9117 0.2760 -2.0008 38 1 4.2589 -0.6671 -1.3197 39 1 4.7421 -7.5370 -1.6289 40 1 4.2534 -10.0849 -4.0749 41 1 4.7252 -9.9801 -2.3618 42 1 2.4422 -10.6774 -1.6905 43 1 1.9705 -10.7822 -3.4036 44 1 0.7076 -13.9164 -1.9393 45 1 1.3514 -4.6396 -3.8817 46 1 1.0725 -2.9409 -3.4294 47 1 -0.1698 -3.6810 -1.4151 48 1 -0.9044 -4.3393 -2.8965 49 1 0.1091 -5.3799 -1.8674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121886124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:02 Heat of formation + Delta-G solvation = 183.552639 kcal Electronic energy + Delta-G solvation = -29702.569643 eV Core-core repulsion = 25703.579284 eV Total energy + Delta-G solvation = -3998.990360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.45679 -43.95453 -39.30001 -37.01789 -36.59762 -35.56679 -34.82224 -33.15580 -31.85298 -31.56648 -30.14166 -29.08003 -27.60103 -27.45310 -26.13460 -25.26593 -24.55650 -24.28121 -22.53696 -21.84794 -21.28484 -19.46267 -19.04173 -18.48173 -17.76140 -17.75625 -17.32770 -17.01285 -16.70192 -16.46621 -15.98661 -15.85853 -15.50934 -15.16243 -15.09668 -14.78767 -14.39993 -14.31328 -14.16068 -13.86637 -13.67155 -13.42217 -13.09264 -13.00432 -12.87302 -12.73009 -12.64711 -12.62007 -12.47275 -12.43563 -12.36376 -12.22699 -11.99217 -11.89137 -11.69542 -11.49162 -11.42352 -11.18490 -10.94018 -10.61865 -10.14028 -9.89884 -9.67473 -8.25653 -6.39166 0.02466 0.63466 0.87093 1.16583 1.31431 1.43370 1.44503 1.49260 1.55953 1.95582 2.39962 2.55764 2.78190 3.10414 3.41910 3.62503 3.73936 3.75068 3.92065 3.97710 4.00037 4.01937 4.20082 4.25632 4.30552 4.35427 4.38400 4.50501 4.53819 4.56651 4.60288 4.63571 4.72518 4.78887 4.80938 4.83815 4.95585 5.03699 5.04562 5.12396 5.24354 5.27895 5.37244 5.44377 5.48330 5.53518 5.70182 5.74581 5.95756 6.04615 6.06795 6.77240 7.28487 7.32179 7.44109 8.86686 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.001908 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.008189 B =14671.115535 C =14985.184724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C -0.119 4.119 4 C 0.104 3.896 5 N -0.455 5.455 6 C 0.030 3.970 7 C 0.353 3.647 8 N -0.330 5.330 9 N -0.289 5.289 10 C 0.269 3.731 11 C 0.015 3.985 12 C 0.018 3.982 13 N -0.271 5.271 14 C 0.123 3.877 15 C 0.021 3.979 16 C -0.541 4.541 17 H 0.082 0.918 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.256 1.256 24 N -0.097 5.097 25 N -0.269 5.269 26 N -0.447 5.447 27 C 0.108 3.892 28 C -0.152 4.152 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.042 0.958 39 H 0.231 0.769 40 H 0.110 0.890 41 H 0.134 0.866 42 H -0.007 1.007 43 H 0.002 0.998 44 H 0.264 0.736 45 H 0.098 0.902 46 H 0.121 0.879 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 28.765 1.127 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.175 4.175 4 C -0.022 4.022 5 N -0.181 5.181 6 C -0.116 4.116 7 C -0.003 4.003 8 N -0.176 5.176 9 N -0.132 5.132 10 C 0.002 3.998 11 C -0.125 4.125 12 C -0.138 4.138 13 N -0.062 5.062 14 C 0.004 3.996 15 C -0.017 4.017 16 C -0.580 4.580 17 H 0.100 0.900 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.180 1.180 24 N -0.077 5.077 25 N -0.137 5.137 26 N -0.139 5.139 27 C -0.013 4.013 28 C -0.210 4.210 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.012 0.988 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.140 0.860 47 H 0.081 0.919 48 H 0.119 0.881 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.396 28.269 0.749 28.313 hybrid contribution 0.194 -1.203 0.462 1.303 sum 1.589 27.066 1.211 27.139 Atomic orbital electron populations 1.23894 0.95017 1.02624 0.98543 1.21496 0.95476 0.94306 1.02165 1.20995 1.00147 0.93494 1.02899 1.21194 0.99422 0.95989 0.85562 1.58965 1.41775 0.95008 1.22322 1.22695 0.93635 0.96023 0.99283 1.22529 0.92325 0.90514 0.94935 1.74494 1.16141 1.03789 1.23131 1.74267 1.20510 1.05156 1.13288 1.20934 0.91815 0.87289 0.99784 1.18572 0.98371 0.91182 1.04407 1.24048 1.03306 0.85826 1.00606 1.47842 1.17961 1.12683 1.27723 1.22700 0.98347 0.72544 1.05982 1.19179 0.93612 0.93364 0.95510 1.21449 0.98296 0.90858 1.47362 0.89991 1.26005 0.94959 1.04348 0.94411 1.70131 1.07233 1.32760 1.47053 0.85345 0.78082 0.78041 0.78963 1.19804 1.21472 1.17961 1.78256 1.05152 1.05595 1.18678 1.75219 1.21232 1.03133 1.14096 1.46593 1.23786 1.07905 1.35566 1.22150 0.81462 1.05530 0.92147 1.21968 0.97210 1.00662 1.01118 0.88961 0.86474 0.90203 0.90663 0.91829 0.91507 0.92696 0.91588 0.86921 0.93909 0.75235 0.87157 0.84821 0.98847 0.97945 0.92714 0.88411 0.86045 0.91880 0.88085 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 13.89 67.78 0.94 -0.87 16 2 C -0.13 -1.62 5.10 -16.49 -0.08 -1.70 16 3 C -0.12 -0.94 9.02 71.24 0.64 -0.30 16 4 C 0.10 1.79 5.04 85.56 0.43 2.22 16 5 N -0.45 -8.50 4.77 -735.13 -3.50 -12.00 16 6 C 0.03 0.44 8.99 127.69 1.15 1.58 16 7 C 0.35 9.06 6.39 260.05 1.66 10.72 16 8 N -0.33 -10.17 12.15 -57.92 -0.70 -10.87 16 9 N -0.29 -9.56 12.21 -50.78 -0.62 -10.18 16 10 C 0.27 8.52 7.94 136.28 1.08 9.60 16 11 C 0.01 0.49 7.06 40.93 0.29 0.78 16 12 C 0.02 0.54 11.54 83.82 0.97 1.51 16 13 N -0.27 -9.56 3.43 -346.68 -1.19 -10.75 16 14 C 0.12 4.27 6.39 86.38 0.55 4.82 16 15 C 0.02 1.04 5.10 29.85 0.15 1.19 16 16 C -0.54 -27.76 9.11 25.60 0.23 -27.52 16 17 H 0.08 3.79 7.74 -2.91 -0.02 3.76 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 20 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 N -0.10 -3.85 12.87 37.02 0.48 -3.38 16 25 N -0.27 -9.75 10.81 -49.48 -0.54 -10.28 16 26 N -0.45 -12.00 2.83 -516.58 -1.46 -13.47 16 27 C 0.11 2.33 6.51 86.38 0.56 2.90 16 28 C -0.15 -3.15 10.24 71.98 0.74 -2.42 16 29 H 0.09 1.14 7.99 -2.91 -0.02 1.12 16 30 H 0.12 0.91 8.04 -2.91 -0.02 0.89 16 31 H 0.08 0.48 6.50 -2.39 -0.02 0.46 16 32 H 0.07 0.46 8.06 -2.39 -0.02 0.44 16 33 H 0.06 0.52 8.09 -2.39 -0.02 0.51 16 34 H 0.07 1.32 7.90 -2.39 -0.02 1.30 16 35 H 0.05 1.01 8.05 -2.38 -0.02 0.99 16 36 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.11 1.06 5.23 -2.39 -0.01 1.04 16 38 H 0.04 0.68 8.11 -2.39 -0.02 0.66 16 39 H 0.23 5.32 8.06 -2.91 -0.02 5.30 16 40 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.13 3.76 8.06 -2.39 -0.02 3.74 16 42 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 43 H 0.00 0.12 8.11 -2.39 -0.02 0.10 16 44 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 45 H 0.10 2.36 6.81 -2.39 -0.02 2.34 16 46 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 49 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -69.90 413.01 5.49 -64.41 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.94 Total: 14.61 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 9.78 Total: 3.06 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -7.26 Total: -125.77 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -69.90 5.49 -64.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121886124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.959 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds