Wall clock time and date at job start Wed Apr 1 2020 03:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99848 * 2 1 4 4 C 1.50696 * 119.99819 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47098 * 95.60999 * 4 2 1 6 6 C 1.36738 * 127.13096 * 263.87715 * 5 4 2 7 7 C 1.50697 * 126.35191 * 359.97438 * 6 5 4 8 8 C 1.50703 * 109.46788 * 97.16128 * 7 6 5 9 9 N 1.30712 * 125.52821 * 82.99914 * 8 7 6 10 10 N 1.40445 * 106.79185 * 179.97438 * 9 8 7 11 11 H 0.97001 * 126.82228 * 180.02562 * 10 9 8 12 12 C 1.34425 * 106.35427 * 0.02562 * 10 9 8 13 13 C 1.50702 * 125.95961 * 180.02562 * 12 10 9 14 14 N 1.30824 * 108.08094 * 359.97438 * 12 10 9 15 15 N 1.30297 * 107.30043 * 180.26080 * 6 5 4 16 16 N 1.28531 * 110.05485 * 359.56132 * 15 6 5 17 17 C 1.31209 * 109.85827 * 0.44911 * 16 15 6 18 18 N 1.38577 * 126.47407 * 179.73205 * 17 16 15 19 19 C 1.46907 * 110.99864 * 252.99603 * 18 17 16 20 20 C 1.46898 * 110.99899 * 16.94529 * 18 17 16 21 21 H 1.08997 * 109.47159 * 55.00557 * 20 18 17 22 22 C 1.52993 * 109.47379 * 294.99934 * 20 18 17 23 23 C 1.50701 * 109.47282 * 175.00275 * 20 18 17 24 24 H 1.08006 * 119.99794 * 359.97438 * 23 20 18 25 25 C 1.37870 * 120.00383 * 180.02562 * 23 20 18 26 26 N 1.31522 * 120.00175 * 359.97438 * 25 23 20 27 27 Si 1.86807 * 120.00434 * 179.97438 * 25 23 20 28 28 H 1.48499 * 109.46796 * 59.99659 * 27 25 23 29 29 H 1.48492 * 109.47174 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46785 * 299.99801 * 27 25 23 31 31 H 1.08006 * 120.00046 * 6.42637 * 1 2 3 32 32 H 1.08006 * 119.99958 * 186.43317 * 1 2 3 33 33 H 1.08998 * 109.47353 * 239.99822 * 3 2 1 34 34 H 1.08998 * 109.47518 * 359.97438 * 3 2 1 35 35 H 1.09009 * 109.47028 * 119.99847 * 3 2 1 36 36 H 1.09000 * 109.47560 * 335.60486 * 4 2 1 37 37 H 1.09008 * 109.47364 * 215.60796 * 4 2 1 38 38 H 1.08995 * 109.46925 * 337.16245 * 7 6 5 39 39 H 1.09000 * 109.47282 * 217.15790 * 7 6 5 40 40 H 1.09001 * 109.47532 * 89.99632 * 13 12 10 41 41 H 1.08999 * 109.47461 * 209.99814 * 13 12 10 42 42 H 1.09006 * 109.47404 * 329.99514 * 13 12 10 43 43 H 1.08994 * 109.47214 * 60.86725 * 19 18 17 44 44 H 1.09005 * 109.46692 * 180.86572 * 19 18 17 45 45 H 1.08999 * 109.47032 * 300.86297 * 19 18 17 46 46 H 1.08997 * 109.47856 * 179.97438 * 22 20 18 47 47 H 1.08997 * 109.47483 * 300.00424 * 22 20 18 48 48 H 1.09005 * 109.47118 * 60.00331 * 22 20 18 49 49 H 0.96994 * 120.00182 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4245 -1.6611 -1.3739 6 6 1.7453 -2.4979 -2.2154 7 6 0.4701 -3.2374 -1.9022 8 6 -0.7051 -2.4622 -2.4399 9 7 -1.1404 -2.5001 -3.6719 10 7 -2.2445 -1.6347 -3.7389 11 1 -2.7876 -1.4446 -4.5198 12 6 -2.3990 -1.1221 -2.5058 13 6 -3.4593 -0.1382 -2.0830 14 7 -1.4690 -1.6272 -1.7367 15 7 2.4083 -2.5422 -3.3361 16 7 3.4472 -1.7889 -3.2637 17 6 3.5083 -1.2265 -2.0799 18 7 4.4884 -0.3556 -1.6312 19 6 5.3728 -1.0135 -0.6600 20 6 5.2577 0.1951 -2.7549 21 1 4.5771 0.6602 -3.4680 22 6 6.0288 -0.9313 -3.4458 23 6 6.2287 1.2268 -2.2412 24 1 6.2699 1.4513 -1.1855 25 6 7.0638 1.8850 -3.1189 26 7 7.0134 1.6121 -4.4045 27 14 8.2669 3.1643 -2.4823 28 1 9.1946 2.5312 -1.5108 29 1 9.0447 3.7209 -3.6182 30 1 7.5182 4.2574 -1.8116 31 1 -0.5400 0.9295 -0.1047 32 1 -0.5400 -0.9295 0.1048 33 1 2.6901 1.3629 -0.8899 34 1 1.3552 2.1336 -0.0005 35 1 2.6901 1.3628 0.8901 36 1 1.4346 -2.0876 0.4254 37 1 2.9688 -1.2018 0.5989 38 1 0.3696 -3.3471 -0.8224 39 1 0.4983 -4.2231 -2.3665 40 1 -4.3395 -0.6794 -1.7357 41 1 -3.0749 0.4859 -1.2763 42 1 -3.7306 0.4906 -2.9311 43 1 5.8670 -1.8611 -1.1346 44 1 6.1231 -0.3032 -0.3127 45 1 4.7843 -1.3641 0.1879 46 1 6.5993 -0.5228 -4.2799 47 1 6.7094 -1.3963 -2.7328 48 1 5.3265 -1.6775 -3.8175 49 1 7.6012 2.0748 -5.0219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122590976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:44 Heat of formation + Delta-G solvation = 210.071990 kcal Electronic energy + Delta-G solvation = -31807.572876 eV Core-core repulsion = 27809.732482 eV Total energy + Delta-G solvation = -3997.840394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54944 -42.16446 -37.27556 -36.55399 -34.29700 -33.14187 -32.63475 -32.54286 -31.02849 -28.72829 -28.35929 -27.50467 -27.13258 -26.49133 -25.11100 -24.95426 -22.02935 -21.67571 -21.04000 -20.22137 -19.44512 -18.39035 -18.00225 -16.72534 -16.16214 -15.97361 -15.70895 -15.42841 -14.75278 -14.59613 -14.53916 -14.27634 -13.90821 -13.77505 -13.58627 -13.20471 -13.12041 -13.06181 -12.74937 -12.54130 -12.31419 -12.02777 -11.91135 -11.58773 -11.51105 -11.32169 -11.15021 -11.08725 -10.87212 -10.72659 -10.37077 -10.24645 -10.12342 -10.06636 -10.01469 -9.69180 -9.61063 -9.57751 -8.89322 -8.80734 -8.68996 -8.36066 -7.37919 -5.99307 -4.06671 1.43224 2.04565 2.29224 2.49892 2.67092 3.10029 3.31841 3.37057 3.38547 3.43320 3.82078 4.37331 4.38930 4.56589 4.61435 4.70840 4.74462 4.87966 4.89531 5.02445 5.24925 5.31480 5.35589 5.41199 5.46445 5.52372 5.73564 5.84922 5.95016 6.04532 6.09318 6.13749 6.16613 6.22931 6.28274 6.40492 6.50610 6.56487 6.79972 6.88378 6.88951 7.02666 7.09460 7.22757 7.40566 7.58447 7.73536 7.79730 7.93667 8.02498 8.36655 8.53788 8.95040 9.42134 9.57706 11.06733 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.003270 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.859967 B = 8561.481061 C = 8906.612238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 C -0.117 4.117 4 C 0.152 3.848 5 N -0.470 5.470 6 C 0.148 3.852 7 C 0.072 3.928 8 C 0.234 3.766 9 N -0.289 5.289 10 N -0.483 5.483 11 H 0.439 0.561 12 C 0.279 3.721 13 C -0.077 4.077 14 N -0.527 5.527 15 N -0.273 5.273 16 N -0.314 5.314 17 C 0.388 3.612 18 N -0.454 5.454 19 C 0.037 3.963 20 C 0.231 3.769 21 H 0.045 0.955 22 C -0.181 4.181 23 C -0.512 4.512 24 H 0.063 0.937 25 C 0.064 3.936 26 N -0.885 5.885 27 Si 0.898 3.102 28 H -0.277 1.277 29 H -0.288 1.288 30 H -0.277 1.277 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.020 0.980 48 H 0.055 0.945 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.591 -5.919 10.036 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C -0.174 4.174 4 C 0.030 3.970 5 N -0.166 5.166 6 C -0.121 4.121 7 C 0.030 3.970 8 C -0.050 4.050 9 N -0.117 5.117 10 N -0.201 5.201 11 H 0.284 0.716 12 C 0.001 3.999 13 C -0.136 4.136 14 N -0.257 5.257 15 N -0.113 5.113 16 N -0.158 5.158 17 C 0.033 3.967 18 N -0.178 5.178 19 C -0.110 4.110 20 C 0.127 3.873 21 H 0.063 0.937 22 C -0.240 4.240 23 C -0.551 4.551 24 H 0.081 0.919 25 C -0.139 4.139 26 N -0.523 5.523 27 Si 0.726 3.274 28 H -0.203 1.203 29 H -0.213 1.213 30 H -0.203 1.203 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.112 0.888 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.911 -6.215 8.506 22.526 hybrid contribution 0.225 1.014 0.616 1.207 sum -19.686 -5.201 9.122 22.311 Atomic orbital electron populations 1.24048 0.94685 1.02717 0.97409 1.21782 0.95523 0.95274 1.03357 1.20844 0.99922 0.92908 1.03683 1.20680 1.00872 0.95468 0.79985 1.46244 1.19676 1.36919 1.13742 1.23812 0.98871 0.99942 0.89427 1.17950 0.81396 0.95852 1.01776 1.23758 0.96888 0.96314 0.88003 1.78151 1.00383 1.13399 1.19813 1.48031 1.25518 1.35124 1.11475 0.71564 1.24342 0.96544 0.96436 0.82584 1.20384 0.94213 0.95655 1.03381 1.70309 1.07163 1.14615 1.33612 1.74008 1.02636 1.16671 1.17989 1.74903 1.13903 1.10453 1.16545 1.23200 0.90610 0.94300 0.88588 1.59384 1.13343 1.26209 1.18876 1.22343 0.96168 0.98944 0.93563 1.19313 0.90965 0.92038 0.85006 0.93734 1.22576 1.00570 0.98767 1.02082 1.20993 1.19046 1.20864 0.94187 0.91892 1.24888 0.97204 0.96989 0.94795 1.69922 1.38728 1.41761 1.01845 0.86567 0.80956 0.81658 0.78220 1.20299 1.21337 1.20267 0.89128 0.86310 0.89770 0.92970 0.91783 0.89018 0.88574 0.87767 0.86448 0.89082 0.88344 0.90008 0.94619 0.88808 0.93767 0.89539 0.96080 0.92663 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 12.60 29.01 0.37 -1.42 16 2 C -0.16 -2.14 5.63 -101.07 -0.57 -2.71 16 3 C -0.12 -1.73 10.12 36.00 0.36 -1.36 16 4 C 0.15 2.02 6.20 -5.20 -0.03 1.98 16 5 N -0.47 -8.07 2.79 -115.37 -0.32 -8.39 16 6 C 0.15 2.55 7.30 -154.02 -1.12 1.42 16 7 C 0.07 0.92 6.27 -29.04 -0.18 0.74 16 8 C 0.23 3.20 7.38 -156.85 -1.16 2.04 16 9 N -0.29 -4.16 12.80 32.42 0.41 -3.74 16 10 N -0.48 -4.97 7.45 32.62 0.24 -4.73 16 11 H 0.44 2.94 8.96 -182.33 -1.63 1.31 16 12 C 0.28 2.68 8.24 -155.70 -1.28 1.39 16 13 C -0.08 -0.37 10.51 36.01 0.38 0.01 16 14 N -0.53 -6.28 7.94 -8.16 -0.06 -6.35 16 15 N -0.27 -5.85 12.18 32.99 0.40 -5.45 16 16 N -0.31 -7.42 8.92 30.31 0.27 -7.15 16 17 C 0.39 8.23 6.67 -318.89 -2.13 6.10 16 18 N -0.45 -9.82 4.12 -176.09 -0.73 -10.54 16 19 C 0.04 0.70 8.71 60.07 0.52 1.22 16 20 C 0.23 5.99 2.11 -68.87 -0.15 5.84 16 21 H 0.04 1.34 8.11 -51.93 -0.42 0.92 16 22 C -0.18 -4.70 8.27 37.15 0.31 -4.39 16 23 C -0.51 -13.74 7.90 -34.44 -0.27 -14.02 16 24 H 0.06 1.63 6.76 -52.48 -0.35 1.28 16 25 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 26 N -0.88 -25.60 11.32 55.43 0.63 -24.97 16 27 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.09 1.02 7.85 -52.48 -0.41 0.61 16 32 H 0.12 1.34 6.12 -52.48 -0.32 1.01 16 33 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 34 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 35 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.09 0.94 6.78 -51.93 -0.35 0.59 16 37 H 0.10 1.23 6.13 -51.92 -0.32 0.91 16 38 H 0.10 1.01 6.98 -51.93 -0.36 0.65 16 39 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.04 0.70 6.46 -51.93 -0.34 0.36 16 44 H 0.09 1.80 6.44 -51.93 -0.33 1.47 16 45 H 0.04 0.68 6.15 -51.93 -0.32 0.36 16 46 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 47 H 0.02 0.51 6.45 -51.93 -0.34 0.17 16 48 H 0.05 1.44 5.33 -51.93 -0.28 1.16 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -35.34 390.47 -11.47 -46.81 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.13 Total: 4.03 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -5.05 Total: -1.49 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: 0.84 Total: -71.32 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.34 -11.47 -46.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122590976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.887 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds