Wall clock time and date at job start Wed Apr 1 2020 03:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99848 * 2 1 4 4 C 1.50696 * 119.99819 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47098 * 95.60999 * 4 2 1 6 6 C 1.36738 * 127.13096 * 263.87715 * 5 4 2 7 7 C 1.50697 * 126.35191 * 359.97438 * 6 5 4 8 8 C 1.50703 * 109.46788 * 97.16128 * 7 6 5 9 9 N 1.30712 * 125.52821 * 82.99914 * 8 7 6 10 10 N 1.40445 * 106.79185 * 179.97438 * 9 8 7 11 11 H 0.97001 * 126.82228 * 180.02562 * 10 9 8 12 12 C 1.34425 * 106.35427 * 0.02562 * 10 9 8 13 13 C 1.50702 * 125.95961 * 180.02562 * 12 10 9 14 14 N 1.30824 * 108.08094 * 359.97438 * 12 10 9 15 15 N 1.30297 * 107.30043 * 180.26080 * 6 5 4 16 16 N 1.28531 * 110.05485 * 359.56132 * 15 6 5 17 17 C 1.31209 * 109.85827 * 0.44911 * 16 15 6 18 18 N 1.38577 * 126.47407 * 179.73205 * 17 16 15 19 19 C 1.46907 * 110.99864 * 252.99603 * 18 17 16 20 20 C 1.46898 * 110.99899 * 16.94529 * 18 17 16 21 21 H 1.08997 * 109.47159 * 55.00557 * 20 18 17 22 22 C 1.52993 * 109.47379 * 294.99934 * 20 18 17 23 23 C 1.50701 * 109.47282 * 175.00275 * 20 18 17 24 24 H 1.08006 * 119.99794 * 359.97438 * 23 20 18 25 25 C 1.37870 * 120.00383 * 180.02562 * 23 20 18 26 26 N 1.31522 * 120.00175 * 359.97438 * 25 23 20 27 27 Si 1.86807 * 120.00434 * 179.97438 * 25 23 20 28 28 H 1.48499 * 109.46796 * 59.99659 * 27 25 23 29 29 H 1.48492 * 109.47174 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46785 * 299.99801 * 27 25 23 31 31 H 1.08006 * 120.00046 * 6.42637 * 1 2 3 32 32 H 1.08006 * 119.99958 * 186.43317 * 1 2 3 33 33 H 1.08998 * 109.47353 * 239.99822 * 3 2 1 34 34 H 1.08998 * 109.47518 * 359.97438 * 3 2 1 35 35 H 1.09009 * 109.47028 * 119.99847 * 3 2 1 36 36 H 1.09000 * 109.47560 * 335.60486 * 4 2 1 37 37 H 1.09008 * 109.47364 * 215.60796 * 4 2 1 38 38 H 1.08995 * 109.46925 * 337.16245 * 7 6 5 39 39 H 1.09000 * 109.47282 * 217.15790 * 7 6 5 40 40 H 1.09001 * 109.47532 * 89.99632 * 13 12 10 41 41 H 1.08999 * 109.47461 * 209.99814 * 13 12 10 42 42 H 1.09006 * 109.47404 * 329.99514 * 13 12 10 43 43 H 1.08994 * 109.47214 * 60.86725 * 19 18 17 44 44 H 1.09005 * 109.46692 * 180.86572 * 19 18 17 45 45 H 1.08999 * 109.47032 * 300.86297 * 19 18 17 46 46 H 1.08997 * 109.47856 * 179.97438 * 22 20 18 47 47 H 1.08997 * 109.47483 * 300.00424 * 22 20 18 48 48 H 1.09005 * 109.47118 * 60.00331 * 22 20 18 49 49 H 0.96994 * 120.00182 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4245 -1.6611 -1.3739 6 6 1.7453 -2.4979 -2.2154 7 6 0.4701 -3.2374 -1.9022 8 6 -0.7051 -2.4622 -2.4399 9 7 -1.1404 -2.5001 -3.6719 10 7 -2.2445 -1.6347 -3.7389 11 1 -2.7876 -1.4446 -4.5198 12 6 -2.3990 -1.1221 -2.5058 13 6 -3.4593 -0.1382 -2.0830 14 7 -1.4690 -1.6272 -1.7367 15 7 2.4083 -2.5422 -3.3361 16 7 3.4472 -1.7889 -3.2637 17 6 3.5083 -1.2265 -2.0799 18 7 4.4884 -0.3556 -1.6312 19 6 5.3728 -1.0135 -0.6600 20 6 5.2577 0.1951 -2.7549 21 1 4.5771 0.6602 -3.4680 22 6 6.0288 -0.9313 -3.4458 23 6 6.2287 1.2268 -2.2412 24 1 6.2699 1.4513 -1.1855 25 6 7.0638 1.8850 -3.1189 26 7 7.0134 1.6121 -4.4045 27 14 8.2669 3.1643 -2.4823 28 1 9.1946 2.5312 -1.5108 29 1 9.0447 3.7209 -3.6182 30 1 7.5182 4.2574 -1.8116 31 1 -0.5400 0.9295 -0.1047 32 1 -0.5400 -0.9295 0.1048 33 1 2.6901 1.3629 -0.8899 34 1 1.3552 2.1336 -0.0005 35 1 2.6901 1.3628 0.8901 36 1 1.4346 -2.0876 0.4254 37 1 2.9688 -1.2018 0.5989 38 1 0.3696 -3.3471 -0.8224 39 1 0.4983 -4.2231 -2.3665 40 1 -4.3395 -0.6794 -1.7357 41 1 -3.0749 0.4859 -1.2763 42 1 -3.7306 0.4906 -2.9311 43 1 5.8670 -1.8611 -1.1346 44 1 6.1231 -0.3032 -0.3127 45 1 4.7843 -1.3641 0.1879 46 1 6.5993 -0.5228 -4.2799 47 1 6.7094 -1.3963 -2.7328 48 1 5.3265 -1.6775 -3.8175 49 1 7.6012 2.0748 -5.0219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122590976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:43 Heat of formation + Delta-G solvation = 189.608921 kcal Electronic energy + Delta-G solvation = -31808.460221 eV Core-core repulsion = 27809.732482 eV Total energy + Delta-G solvation = -3998.727739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.97051 -43.08317 -39.05068 -37.71673 -35.32419 -34.83440 -34.15278 -33.33217 -32.17987 -30.64271 -29.43055 -28.55491 -28.30014 -27.60049 -27.18463 -26.58047 -23.42414 -23.04801 -22.01534 -21.48445 -20.99287 -19.53171 -18.82994 -18.33806 -17.83171 -17.22789 -17.21041 -16.76071 -16.42638 -15.89211 -15.51124 -15.40322 -15.13010 -15.05413 -14.87812 -14.62051 -14.21450 -13.98567 -13.70307 -13.58541 -13.49202 -13.39854 -13.16525 -13.05343 -12.86848 -12.79530 -12.73205 -12.64454 -12.44834 -12.23467 -12.16623 -12.00661 -11.95798 -11.40707 -11.10177 -11.02746 -10.88115 -10.79568 -10.51586 -10.46929 -10.38354 -9.91015 -9.07425 -8.10274 -6.25547 0.53836 0.82091 1.09044 1.44381 1.47193 1.54389 1.61290 1.73145 1.90666 2.01115 2.43336 3.02565 3.11381 3.19249 3.44948 3.56845 3.66615 3.86294 3.90212 4.07499 4.12929 4.24882 4.44348 4.55184 4.56730 4.60079 4.70753 4.72150 4.74637 4.76949 4.87756 4.93640 5.02585 5.05064 5.06824 5.16096 5.17099 5.27545 5.31527 5.33437 5.36475 5.47832 5.63734 5.68485 5.81486 5.87446 6.00690 6.09875 6.22347 6.25480 6.65673 6.84302 7.07373 7.43308 7.88664 8.96059 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.003270 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.859967 B = 8561.481061 C = 8906.612238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.183 4.183 3 C -0.111 4.111 4 C 0.145 3.855 5 N -0.460 5.460 6 C 0.176 3.824 7 C 0.072 3.928 8 C 0.223 3.777 9 N -0.335 5.335 10 N -0.479 5.479 11 H 0.452 0.548 12 C 0.285 3.715 13 C -0.075 4.075 14 N -0.540 5.540 15 N -0.320 5.320 16 N -0.364 5.364 17 C 0.372 3.628 18 N -0.449 5.449 19 C 0.039 3.961 20 C 0.246 3.754 21 H -0.010 1.010 22 C -0.163 4.163 23 C -0.520 4.520 24 H 0.073 0.927 25 C 0.011 3.989 26 N -0.921 5.921 27 Si 0.968 3.032 28 H -0.264 1.264 29 H -0.289 1.289 30 H -0.269 1.269 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.023 0.977 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.028 0.972 48 H 0.051 0.949 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.886 -5.745 13.242 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C -0.168 4.168 4 C 0.024 3.976 5 N -0.154 5.154 6 C -0.094 4.094 7 C 0.030 3.970 8 C -0.061 4.061 9 N -0.165 5.165 10 N -0.199 5.199 11 H 0.300 0.700 12 C 0.008 3.992 13 C -0.134 4.134 14 N -0.271 5.271 15 N -0.159 5.159 16 N -0.208 5.208 17 C 0.015 3.985 18 N -0.173 5.173 19 C -0.107 4.107 20 C 0.140 3.860 21 H 0.008 0.992 22 C -0.223 4.223 23 C -0.559 4.559 24 H 0.091 0.909 25 C -0.188 4.188 26 N -0.560 5.560 27 Si 0.793 3.207 28 H -0.189 1.189 29 H -0.215 1.215 30 H -0.194 1.194 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.134 0.866 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.042 0.958 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.075 0.925 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.244 -6.047 11.737 25.868 hybrid contribution 0.685 0.946 -0.377 1.227 sum -21.559 -5.101 11.360 24.897 Atomic orbital electron populations 1.24222 0.93996 1.03682 0.94215 1.21710 0.96060 0.94614 1.05978 1.20743 0.99763 0.94457 1.01807 1.21082 1.02004 0.96714 0.77768 1.46428 1.18127 1.35921 1.14936 1.24628 0.98834 0.97969 0.87959 1.18258 0.78868 0.95568 1.04268 1.23834 0.97295 0.96872 0.88099 1.78054 1.02245 1.15391 1.20793 1.47983 1.24819 1.34557 1.12553 0.70005 1.25253 0.96391 0.95770 0.81836 1.20642 0.93439 0.95007 1.04309 1.70281 1.07825 1.14934 1.34011 1.73904 1.03372 1.18074 1.20541 1.74722 1.15718 1.11982 1.18389 1.23060 0.91639 0.94875 0.88957 1.59240 1.13343 1.27201 1.17469 1.22410 0.96326 0.98121 0.93885 1.18838 0.89888 0.91830 0.85428 0.99199 1.22369 1.00115 0.98675 1.01111 1.21290 1.18944 1.20967 0.94649 0.90905 1.25797 0.99087 0.99080 0.94841 1.70100 1.39689 1.42992 1.03253 0.85457 0.78603 0.78966 0.77661 1.18907 1.21507 1.19439 0.88327 0.84983 0.94384 0.92069 0.90971 0.85084 0.87978 0.84009 0.85244 0.86646 0.87944 0.88028 0.95833 0.89194 0.89833 0.92503 0.95330 0.93063 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 12.60 67.78 0.85 -1.65 16 2 C -0.18 -4.49 5.63 -16.49 -0.09 -4.59 16 3 C -0.11 -3.18 10.12 71.23 0.72 -2.46 16 4 C 0.14 3.42 6.20 85.63 0.53 3.95 16 5 N -0.46 -15.32 2.79 -518.92 -1.45 -16.77 16 6 C 0.18 5.94 7.30 137.64 1.01 6.95 16 7 C 0.07 1.67 6.27 29.10 0.18 1.85 16 8 C 0.22 5.68 7.38 138.63 1.02 6.71 16 9 N -0.34 -9.38 12.80 -51.33 -0.66 -10.04 16 10 N -0.48 -9.10 7.45 -50.71 -0.38 -9.48 16 11 H 0.45 5.42 8.96 -213.10 -1.91 3.51 16 12 C 0.29 4.68 8.24 138.23 1.14 5.82 16 13 C -0.08 -0.43 10.51 71.24 0.75 0.32 16 14 N -0.54 -11.33 7.94 -179.72 -1.43 -12.76 16 15 N -0.32 -14.12 12.18 -49.54 -0.60 -14.72 16 16 N -0.36 -18.05 8.92 -58.01 -0.52 -18.56 16 17 C 0.37 16.14 6.67 260.12 1.73 17.87 16 18 N -0.45 -19.92 4.12 -711.02 -2.93 -22.86 16 19 C 0.04 1.46 8.71 127.69 1.11 2.58 16 20 C 0.25 13.41 2.11 44.17 0.09 13.51 16 21 H -0.01 -0.64 8.11 -2.39 -0.02 -0.66 16 22 C -0.16 -8.97 8.27 71.98 0.60 -8.37 16 23 C -0.52 -28.61 7.90 25.60 0.20 -28.41 16 24 H 0.07 3.78 6.76 -2.91 -0.02 3.76 16 25 C 0.01 0.61 5.30 84.65 0.45 1.06 16 26 N -0.92 -55.52 11.32 21.45 0.24 -55.28 16 27 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 28 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 29 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 30 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 31 H 0.10 1.86 7.85 -2.91 -0.02 1.84 16 32 H 0.13 2.38 6.12 -2.91 -0.02 2.36 16 33 H 0.04 1.45 7.48 -2.39 -0.02 1.43 16 34 H 0.06 1.57 7.79 -2.39 -0.02 1.55 16 35 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.13 2.06 6.78 -2.39 -0.02 2.04 16 37 H 0.10 2.29 6.13 -2.38 -0.01 2.28 16 38 H 0.14 2.14 6.98 -2.39 -0.02 2.13 16 39 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 43 H 0.02 0.92 6.46 -2.39 -0.02 0.90 16 44 H 0.09 3.40 6.44 -2.38 -0.02 3.38 16 45 H 0.08 2.42 6.15 -2.39 -0.01 2.40 16 46 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 47 H 0.03 1.46 6.45 -2.39 -0.02 1.44 16 48 H 0.05 2.84 5.33 -2.38 -0.01 2.83 16 49 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -82.97 390.47 3.69 -79.28 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.91 Total: 20.33 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 10.30 Total: 15.15 kcal Atomic # 7 Polarization: -152.74 SS G_CDS: -7.72 Total: -160.46 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -82.97 3.69 -79.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122590976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.886 kcal (2) G-P(sol) polarization free energy of solvation -82.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds