Wall clock time and date at job start Wed Apr 1 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00269 * 2 1 4 4 C 1.53003 * 109.47027 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.37091 * 124.98783 * 265.02665 * 5 4 3 7 7 C 1.34307 * 109.81132 * 179.97438 * 6 5 4 8 8 C 1.46172 * 106.80310 * 0.02562 * 7 6 5 9 9 C 1.36781 * 124.98445 * 84.99804 * 5 4 3 10 10 N 1.33201 * 134.30232 * 0.02562 * 9 5 4 11 11 C 1.31554 * 120.71019 * 180.02562 * 10 9 5 12 12 N 1.32084 * 122.71568 * 359.70438 * 11 10 9 13 13 C 1.32996 * 121.02778 * 0.59216 * 12 11 10 14 14 N 1.38324 * 120.83015 * 179.70625 * 13 12 11 15 15 C 1.46955 * 110.99413 * 123.52366 * 14 13 12 16 16 C 1.53055 * 109.36535 * 176.81074 * 15 14 13 17 17 N 1.46960 * 109.36461 * 58.39604 * 16 15 14 18 18 C 1.46896 * 110.99809 * 176.81648 * 17 16 15 19 19 C 1.50700 * 109.47416 * 58.97742 * 18 17 16 20 20 H 1.07997 * 119.99716 * 5.01264 * 19 18 17 21 21 C 1.37882 * 120.00062 * 185.00742 * 19 18 17 22 22 N 1.31514 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46987 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46951 * 120.00103 * 23 21 19 26 26 H 1.48503 * 109.46681 * 239.99827 * 23 21 19 27 27 C 1.46955 * 110.87877 * 300.68447 * 17 16 15 28 28 C 1.46951 * 111.00570 * 359.71974 * 14 13 12 29 29 H 1.09001 * 109.47087 * 59.99104 * 1 2 3 30 30 H 1.08995 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46733 * 299.99837 * 1 2 3 32 32 H 1.09002 * 109.46919 * 60.00476 * 3 2 1 33 33 H 1.09006 * 109.47283 * 300.00207 * 3 2 1 34 34 H 1.09002 * 109.47052 * 60.00349 * 4 3 2 35 35 H 1.08997 * 109.46936 * 299.99545 * 4 3 2 36 36 H 1.08001 * 125.09836 * 359.97430 * 6 5 4 37 37 H 1.07992 * 126.59848 * 180.02562 * 7 6 5 38 38 H 1.07995 * 118.63514 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.49061 * 296.77433 * 15 14 13 40 40 H 1.08998 * 109.49603 * 56.84084 * 15 14 13 41 41 H 1.09007 * 109.48265 * 298.43186 * 16 15 14 42 42 H 1.08993 * 109.49340 * 178.37023 * 16 15 14 43 43 H 1.09005 * 109.47119 * 178.98278 * 18 17 16 44 44 H 1.09001 * 109.47057 * 298.97969 * 18 17 16 45 45 H 0.96993 * 119.99944 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.48953 * 299.34678 * 27 17 16 47 47 H 1.09001 * 109.48808 * 179.29172 * 27 17 16 48 48 H 1.08993 * 109.49218 * 303.15869 * 28 14 13 49 49 H 1.09010 * 109.48652 * 63.19755 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 4.1315 2.5228 -0.0013 6 6 4.5397 3.2010 -1.1205 7 6 5.0388 4.3979 -0.7709 8 6 4.9409 4.4876 0.6848 9 6 4.3618 3.2793 1.1148 10 7 4.1578 3.0997 2.4188 11 6 4.4895 4.0322 3.2854 12 7 5.0392 5.1781 2.9257 13 6 5.2768 5.4526 1.6463 14 7 5.8471 6.6565 1.2736 15 6 7.0766 6.4391 0.4985 16 6 7.6320 7.7891 0.0387 17 7 7.8952 8.6331 1.2126 18 6 8.5008 9.9115 0.8167 19 6 7.5749 10.6353 -0.1265 20 1 6.5973 10.2296 -0.3408 21 6 7.9758 11.8157 -0.7158 22 7 9.1665 12.3095 -0.4551 23 14 6.8277 12.7132 -1.8845 24 1 5.5569 11.9552 -2.0093 25 1 6.5447 14.0712 -1.3546 26 1 7.4693 12.8264 -3.2189 27 6 6.6657 8.8504 1.9877 28 6 6.1103 7.5004 2.4474 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8568 0.6437 -0.8909 35 1 3.8575 0.6435 0.8891 36 1 4.4704 2.8287 -2.1320 37 1 5.4361 5.1494 -1.4370 38 1 4.3096 3.8511 4.3348 39 1 7.8152 5.9353 1.1219 40 1 6.8535 5.8221 -0.3720 41 1 6.9043 8.2808 -0.6070 42 1 8.5596 7.6323 -0.5118 43 1 8.6685 10.5239 1.7027 44 1 9.4524 9.7241 0.3192 45 1 9.4484 13.1400 -0.8694 46 1 5.9271 9.3543 1.3642 47 1 6.8888 9.4674 2.8581 48 1 5.1827 7.6572 2.9979 49 1 6.8377 7.0085 3.0933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:19 Heat of formation + Delta-G solvation = 71.976556 kcal Electronic energy + Delta-G solvation = -30216.836015 eV Core-core repulsion = 26180.714602 eV Total energy + Delta-G solvation = -4036.121413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07411 -39.64432 -38.48991 -38.10866 -35.61308 -33.66201 -32.78007 -32.01157 -30.59560 -29.73039 -29.04070 -27.62350 -26.64687 -25.24420 -24.09750 -23.70941 -22.76015 -22.49299 -21.61565 -20.38003 -19.26269 -18.24275 -17.51182 -16.92079 -16.69175 -16.35682 -16.17089 -15.98802 -15.31198 -14.98314 -14.80128 -14.50730 -14.38455 -14.29168 -14.07413 -13.92502 -13.45738 -13.26755 -13.20683 -13.12653 -13.01013 -12.17257 -11.98122 -11.94057 -11.90135 -11.73503 -11.21088 -11.07033 -10.87968 -10.78995 -10.75765 -10.56693 -10.39126 -10.22266 -10.15201 -9.86619 -9.57889 -9.16650 -9.15774 -8.81840 -8.44975 -7.84367 -7.22727 -6.04346 -4.13272 0.83863 1.33906 2.09431 2.45860 3.25725 3.32262 3.34241 3.38183 3.53231 3.94892 4.13314 4.20412 4.39772 4.42440 4.48611 4.62842 4.78290 4.82586 4.86633 4.89339 4.97275 4.99943 5.13572 5.18860 5.24272 5.26045 5.34388 5.47161 5.52829 5.56896 5.72356 5.79246 5.96105 6.01352 6.10136 6.20386 6.25246 6.53800 6.55315 6.65202 6.71122 6.73594 6.80420 6.88838 7.22565 7.24709 7.35785 7.51025 7.88161 7.99742 8.22284 8.26969 8.29060 8.97211 9.53798 11.00810 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002300 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.692804 B =12170.613426 C =12957.386820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.117 3.883 5 N -0.462 5.462 6 C 0.036 3.964 7 C -0.152 4.152 8 C -0.225 4.225 9 C 0.331 3.669 10 N -0.560 5.560 11 C 0.342 3.658 12 N -0.580 5.580 13 C 0.421 3.579 14 N -0.466 5.466 15 C 0.064 3.936 16 C 0.063 3.937 17 N -0.543 5.543 18 C 0.186 3.814 19 C -0.548 4.548 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.058 3.942 28 C 0.070 3.930 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.179 0.821 37 H 0.158 0.842 38 H 0.196 0.804 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.048 0.952 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 -23.425 0.455 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.151 5.151 6 C -0.086 4.086 7 C -0.178 4.178 8 C -0.237 4.237 9 C 0.093 3.907 10 N -0.283 5.283 11 C 0.051 3.949 12 N -0.304 5.304 13 C 0.175 3.825 14 N -0.182 5.182 15 C -0.062 4.062 16 C -0.066 4.066 17 N -0.268 5.268 18 C 0.061 3.939 19 C -0.588 4.588 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.071 4.071 28 C -0.056 4.056 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.196 0.804 37 H 0.175 0.825 38 H 0.213 0.787 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.991 -23.901 1.262 27.232 hybrid contribution -0.994 1.160 -1.627 2.232 sum -13.984 -22.740 -0.366 26.698 Atomic orbital electron populations 1.22779 0.80138 1.03052 1.00332 1.87789 1.20417 1.26971 1.95559 1.22813 0.93424 0.85342 1.01451 1.21491 0.91885 0.81428 1.05729 1.43533 1.52671 1.15110 1.03819 1.21912 1.02803 0.93264 0.90633 1.21696 1.06264 0.97613 0.92249 1.19957 1.11519 0.96611 0.95630 1.18198 0.95993 0.89028 0.87478 1.67346 1.26253 1.35188 0.99518 1.24407 0.88600 0.83215 0.98718 1.68525 1.21989 1.23043 1.16793 1.19715 0.88979 0.86813 0.87003 1.58776 1.26884 1.09378 1.23157 1.22556 0.86842 0.99694 0.97080 1.21976 1.00172 0.90801 0.93613 1.62730 1.24395 1.18930 1.20733 1.19753 0.94814 0.83828 0.95498 1.21786 1.02026 1.07560 1.27378 0.92266 1.24967 0.95019 0.97277 0.96554 1.69951 1.18575 1.20678 1.43706 0.86593 0.81126 0.79759 0.80879 1.19804 1.20987 1.20979 1.22053 0.92563 0.93986 0.98455 1.22226 1.00887 0.93154 0.89359 0.93864 0.89199 0.93773 0.92339 0.92700 0.88150 0.88171 0.80437 0.82456 0.78744 0.93183 0.89630 0.92802 0.90446 0.95293 0.94618 0.92870 0.93378 0.90629 0.89977 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.33 10.70 -35.23 -0.38 -3.71 16 3 C 0.05 0.39 6.26 37.16 0.23 0.62 16 4 C 0.12 0.94 6.42 -4.04 -0.03 0.92 16 5 N -0.46 -4.82 2.76 -116.25 -0.32 -5.14 16 6 C 0.04 0.33 11.29 -16.59 -0.19 0.14 16 7 C -0.15 -1.75 9.74 -37.79 -0.37 -2.12 16 8 C -0.23 -3.21 5.89 -105.00 -0.62 -3.83 16 9 C 0.33 4.46 7.95 -155.85 -1.24 3.22 16 10 N -0.56 -7.63 10.47 -13.89 -0.15 -7.77 16 11 C 0.34 4.44 12.23 -92.11 -1.13 3.32 16 12 N -0.58 -8.75 8.90 -13.67 -0.12 -8.87 16 13 C 0.42 6.61 6.42 -154.72 -0.99 5.61 16 14 N -0.47 -7.67 4.73 -172.71 -0.82 -8.48 16 15 C 0.06 1.00 5.36 -3.77 -0.02 0.98 16 16 C 0.06 1.19 5.24 -3.76 -0.02 1.17 16 17 N -0.54 -11.38 4.92 -235.91 -1.16 -12.54 16 18 C 0.19 4.68 5.14 -4.98 -0.03 4.66 16 19 C -0.55 -14.70 7.66 -34.44 -0.26 -14.97 16 20 H 0.06 1.59 5.82 -52.49 -0.31 1.29 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 23 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.06 1.13 5.32 -3.77 -0.02 1.11 16 28 C 0.07 1.18 4.80 -3.77 -0.02 1.16 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.16 1.65 7.00 -52.49 -0.37 1.28 16 38 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.17 5.17 -51.93 -0.27 0.90 16 41 H 0.05 1.11 6.62 -51.92 -0.34 0.77 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.03 0.78 8.12 -51.93 -0.42 0.35 16 44 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.05 1.02 6.78 -51.93 -0.35 0.67 16 47 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 48 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 49 H 0.06 0.97 8.07 -51.92 -0.42 0.56 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -31.98 392.20 -12.51 -44.49 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.51 Total: 0.02 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.68 Total: 4.98 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -1.83 Total: -67.87 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.38 Total: -3.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.98 -12.51 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.471 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds