Wall clock time and date at job start Wed Apr 1 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00269 * 2 1 4 4 C 1.53003 * 109.47027 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.37091 * 124.98783 * 265.02665 * 5 4 3 7 7 C 1.34307 * 109.81132 * 179.97438 * 6 5 4 8 8 C 1.46172 * 106.80310 * 0.02562 * 7 6 5 9 9 C 1.36781 * 124.98445 * 84.99804 * 5 4 3 10 10 N 1.33201 * 134.30232 * 0.02562 * 9 5 4 11 11 C 1.31554 * 120.71019 * 180.02562 * 10 9 5 12 12 N 1.32084 * 122.71568 * 359.70438 * 11 10 9 13 13 C 1.32996 * 121.02778 * 0.59216 * 12 11 10 14 14 N 1.38324 * 120.83015 * 179.70625 * 13 12 11 15 15 C 1.46955 * 110.99413 * 123.52366 * 14 13 12 16 16 C 1.53055 * 109.36535 * 176.81074 * 15 14 13 17 17 N 1.46960 * 109.36461 * 58.39604 * 16 15 14 18 18 C 1.46896 * 110.99809 * 176.81648 * 17 16 15 19 19 C 1.50700 * 109.47416 * 58.97742 * 18 17 16 20 20 H 1.07997 * 119.99716 * 5.01264 * 19 18 17 21 21 C 1.37882 * 120.00062 * 185.00742 * 19 18 17 22 22 N 1.31514 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46987 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46951 * 120.00103 * 23 21 19 26 26 H 1.48503 * 109.46681 * 239.99827 * 23 21 19 27 27 C 1.46955 * 110.87877 * 300.68447 * 17 16 15 28 28 C 1.46951 * 111.00570 * 359.71974 * 14 13 12 29 29 H 1.09001 * 109.47087 * 59.99104 * 1 2 3 30 30 H 1.08995 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46733 * 299.99837 * 1 2 3 32 32 H 1.09002 * 109.46919 * 60.00476 * 3 2 1 33 33 H 1.09006 * 109.47283 * 300.00207 * 3 2 1 34 34 H 1.09002 * 109.47052 * 60.00349 * 4 3 2 35 35 H 1.08997 * 109.46936 * 299.99545 * 4 3 2 36 36 H 1.08001 * 125.09836 * 359.97430 * 6 5 4 37 37 H 1.07992 * 126.59848 * 180.02562 * 7 6 5 38 38 H 1.07995 * 118.63514 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.49061 * 296.77433 * 15 14 13 40 40 H 1.08998 * 109.49603 * 56.84084 * 15 14 13 41 41 H 1.09007 * 109.48265 * 298.43186 * 16 15 14 42 42 H 1.08993 * 109.49340 * 178.37023 * 16 15 14 43 43 H 1.09005 * 109.47119 * 178.98278 * 18 17 16 44 44 H 1.09001 * 109.47057 * 298.97969 * 18 17 16 45 45 H 0.96993 * 119.99944 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.48953 * 299.34678 * 27 17 16 47 47 H 1.09001 * 109.48808 * 179.29172 * 27 17 16 48 48 H 1.08993 * 109.49218 * 303.15869 * 28 14 13 49 49 H 1.09010 * 109.48652 * 63.19755 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 4.1315 2.5228 -0.0013 6 6 4.5397 3.2010 -1.1205 7 6 5.0388 4.3979 -0.7709 8 6 4.9409 4.4876 0.6848 9 6 4.3618 3.2793 1.1148 10 7 4.1578 3.0997 2.4188 11 6 4.4895 4.0322 3.2854 12 7 5.0392 5.1781 2.9257 13 6 5.2768 5.4526 1.6463 14 7 5.8471 6.6565 1.2736 15 6 7.0766 6.4391 0.4985 16 6 7.6320 7.7891 0.0387 17 7 7.8952 8.6331 1.2126 18 6 8.5008 9.9115 0.8167 19 6 7.5749 10.6353 -0.1265 20 1 6.5973 10.2296 -0.3408 21 6 7.9758 11.8157 -0.7158 22 7 9.1665 12.3095 -0.4551 23 14 6.8277 12.7132 -1.8845 24 1 5.5569 11.9552 -2.0093 25 1 6.5447 14.0712 -1.3546 26 1 7.4693 12.8264 -3.2189 27 6 6.6657 8.8504 1.9877 28 6 6.1103 7.5004 2.4474 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8568 0.6437 -0.8909 35 1 3.8575 0.6435 0.8891 36 1 4.4704 2.8287 -2.1320 37 1 5.4361 5.1494 -1.4370 38 1 4.3096 3.8511 4.3348 39 1 7.8152 5.9353 1.1219 40 1 6.8535 5.8221 -0.3720 41 1 6.9043 8.2808 -0.6070 42 1 8.5596 7.6323 -0.5118 43 1 8.6685 10.5239 1.7027 44 1 9.4524 9.7241 0.3192 45 1 9.4484 13.1400 -0.8694 46 1 5.9271 9.3543 1.3642 47 1 6.8888 9.4674 2.8581 48 1 5.1827 7.6572 2.9979 49 1 6.8377 7.0085 3.0933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:18 Heat of formation + Delta-G solvation = 52.103739 kcal Electronic energy + Delta-G solvation = -30217.697765 eV Core-core repulsion = 26180.714602 eV Total energy + Delta-G solvation = -4036.983163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.01772 -40.79791 -39.57117 -38.83845 -37.11913 -34.74705 -34.30392 -33.36486 -31.98894 -30.86349 -29.82264 -29.21015 -27.26815 -26.89725 -25.18505 -24.81026 -23.85431 -23.76353 -23.09148 -21.37317 -20.76509 -19.14747 -18.70812 -18.25983 -17.66703 -17.45963 -16.94085 -16.79195 -16.73267 -16.30750 -15.91255 -15.80554 -15.71025 -15.58189 -15.32316 -14.87970 -14.79685 -14.58505 -14.09565 -14.05443 -14.01324 -13.80142 -13.47786 -12.95536 -12.85765 -12.77970 -12.54743 -12.49799 -12.34223 -12.30421 -12.20211 -12.00744 -11.88561 -11.75470 -11.66360 -11.43888 -10.80010 -10.59468 -10.22999 -10.21838 -9.81871 -9.05794 -8.82139 -8.14256 -6.32874 -0.16505 0.31575 1.31873 1.37185 1.39262 1.50745 1.63457 2.36439 2.38974 2.68627 2.91829 3.11072 3.26338 3.32745 3.35752 3.65671 3.76041 3.86318 3.88870 3.99264 4.11903 4.17104 4.20557 4.30413 4.37758 4.39839 4.44399 4.47855 4.50815 4.59979 4.64398 4.71378 4.76061 4.80618 4.86893 4.95695 5.06574 5.12826 5.21686 5.25814 5.31568 5.35423 5.54333 5.75309 5.83555 5.93451 6.01493 6.01949 6.08472 6.25286 6.34320 6.47006 6.87090 7.26121 7.38355 8.88653 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002300 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.692804 B =12170.613426 C =12957.386820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.054 3.946 4 C 0.117 3.883 5 N -0.458 5.458 6 C 0.068 3.932 7 C -0.182 4.182 8 C -0.238 4.238 9 C 0.311 3.689 10 N -0.563 5.563 11 C 0.331 3.669 12 N -0.594 5.594 13 C 0.398 3.602 14 N -0.476 5.476 15 C 0.078 3.922 16 C 0.067 3.933 17 N -0.544 5.544 18 C 0.200 3.800 19 C -0.552 4.552 20 H 0.056 0.944 21 C 0.012 3.988 22 N -0.925 5.925 23 Si 0.957 3.043 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.277 1.277 27 C 0.064 3.936 28 C 0.087 3.913 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.226 0.774 37 H 0.165 0.835 38 H 0.226 0.774 39 H 0.046 0.954 40 H 0.110 0.890 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.005 0.995 44 H 0.012 0.988 45 H 0.265 0.735 46 H 0.027 0.973 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 -25.649 -1.238 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.024 4.024 4 C -0.004 4.004 5 N -0.146 5.146 6 C -0.055 4.055 7 C -0.207 4.207 8 C -0.250 4.250 9 C 0.072 3.928 10 N -0.286 5.286 11 C 0.040 3.960 12 N -0.318 5.318 13 C 0.153 3.847 14 N -0.192 5.192 15 C -0.047 4.047 16 C -0.062 4.062 17 N -0.268 5.268 18 C 0.073 3.927 19 C -0.591 4.591 20 H 0.075 0.925 21 C -0.187 4.187 22 N -0.565 5.565 23 Si 0.782 3.218 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.202 1.202 27 C -0.065 4.065 28 C -0.040 4.040 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.242 0.758 37 H 0.182 0.818 38 H 0.242 0.758 39 H 0.065 0.935 40 H 0.128 0.872 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.023 0.977 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.092 0.908 48 H 0.106 0.894 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.761 -26.169 -0.421 30.048 hybrid contribution -0.513 1.692 -1.095 2.080 sum -15.273 -24.477 -1.516 28.891 Atomic orbital electron populations 1.22962 0.78899 1.04266 1.00777 1.87763 1.21826 1.27021 1.95616 1.22704 0.93462 0.85272 1.00933 1.21649 0.91720 0.80220 1.06834 1.43804 1.51959 1.15634 1.03245 1.22645 0.99177 0.91828 0.91826 1.21864 1.08576 0.99286 0.90996 1.20236 1.11347 0.96443 0.96979 1.18504 0.96572 0.89652 0.88073 1.67403 1.25958 1.35259 0.99939 1.25005 0.88384 0.82582 0.99995 1.68486 1.22451 1.24012 1.16872 1.19761 0.90084 0.87020 0.87849 1.58800 1.27134 1.10327 1.22962 1.22401 0.86748 0.97667 0.97927 1.21965 0.99870 0.91797 0.92524 1.62651 1.25377 1.17004 1.21733 1.19416 0.94016 0.85332 0.93901 1.21968 1.01974 1.07753 1.27400 0.92543 1.25791 0.96507 0.98175 0.98266 1.70065 1.20256 1.21254 1.44930 0.85527 0.79121 0.78352 0.78791 1.19318 1.20619 1.20221 1.22014 0.91191 0.95624 0.97672 1.21964 1.00745 0.91636 0.89612 0.92854 0.87697 0.93897 0.94418 0.91651 0.85025 0.89120 0.75796 0.81784 0.75797 0.93519 0.87190 0.94692 0.90340 0.97686 0.96949 0.92640 0.95497 0.90803 0.89365 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.03 10.70 -148.98 -1.59 -7.62 16 3 C 0.05 0.77 6.26 71.98 0.45 1.22 16 4 C 0.12 1.54 6.42 86.38 0.55 2.10 16 5 N -0.46 -8.25 2.76 -521.70 -1.44 -9.69 16 6 C 0.07 0.98 11.29 82.97 0.94 1.91 16 7 C -0.18 -3.75 9.74 23.43 0.23 -3.52 16 8 C -0.24 -6.49 5.89 -20.11 -0.12 -6.61 16 9 C 0.31 7.91 7.95 133.96 1.06 8.97 16 10 N -0.56 -14.78 10.47 -197.87 -2.07 -16.85 16 11 C 0.33 8.35 12.23 180.87 2.21 10.57 16 12 N -0.59 -17.72 8.90 -197.17 -1.75 -19.48 16 13 C 0.40 12.32 6.42 133.40 0.86 13.17 16 14 N -0.48 -15.60 4.73 -700.35 -3.32 -18.91 16 15 C 0.08 2.43 5.36 86.31 0.46 2.89 16 16 C 0.07 2.55 5.24 86.31 0.45 3.01 16 17 N -0.54 -23.46 4.92 -900.28 -4.43 -27.89 16 18 C 0.20 10.45 5.14 85.56 0.44 10.89 16 19 C -0.55 -30.28 7.66 25.60 0.20 -30.08 16 20 H 0.06 3.09 5.82 -2.91 -0.02 3.07 16 21 C 0.01 0.67 5.46 84.66 0.46 1.13 16 22 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 23 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.06 2.54 5.32 86.31 0.46 3.00 16 28 C 0.09 2.96 4.80 86.31 0.41 3.38 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 34 H 0.13 0.96 8.12 -2.39 -0.02 0.94 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.23 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.16 3.07 7.00 -2.91 -0.02 3.05 16 38 H 0.23 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.11 2.88 5.17 -2.39 -0.01 2.87 16 41 H 0.03 1.47 6.62 -2.38 -0.02 1.45 16 42 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.00 0.28 8.12 -2.38 -0.02 0.26 16 44 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.03 1.18 6.78 -2.39 -0.02 1.16 16 47 H 0.07 2.90 8.12 -2.39 -0.02 2.89 16 48 H 0.09 2.88 7.86 -2.39 -0.02 2.86 16 49 H 0.05 1.85 8.07 -2.38 -0.02 1.84 16 Total: -1.00 -70.70 392.20 -1.02 -71.72 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.95 Total: 13.74 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 10.32 Total: 23.53 kcal Atomic # 7 Polarization: -134.42 SS G_CDS: -12.72 Total: -147.14 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -1.59 Total: -7.62 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.70 -1.02 -71.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.820 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds