Wall clock time and date at job start Wed Apr 1 2020 03:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47543 * 2 1 4 4 C 1.53001 * 109.47576 * 120.00567 * 2 1 3 5 5 C 1.53001 * 109.47228 * 184.98108 * 4 2 1 6 6 C 1.50697 * 109.47206 * 184.54043 * 5 4 2 7 7 H 1.08001 * 119.99830 * 4.99293 * 6 5 4 8 8 C 1.37875 * 120.00357 * 184.99344 * 6 5 4 9 9 N 1.31511 * 120.00498 * 184.96076 * 8 6 5 10 10 Si 1.86805 * 119.99468 * 4.96108 * 8 6 5 11 11 H 1.48502 * 109.46852 * 94.66278 * 10 8 6 12 12 H 1.48500 * 109.46658 * 214.65308 * 10 8 6 13 13 H 1.48490 * 109.47395 * 334.65401 * 10 8 6 14 14 N 1.46854 * 109.46902 * 240.00475 * 2 1 3 15 15 C 1.43219 * 112.65178 * 84.29491 * 14 2 1 16 16 C 1.52492 * 113.78248 * 158.92590 * 15 14 2 17 17 C 1.53167 * 107.61103 * 89.95391 * 16 15 14 18 18 N 1.46729 * 107.94616 * 278.66790 * 17 16 15 19 19 N 1.29703 * 122.08691 * 222.94930 * 18 17 16 20 20 N 1.28283 * 110.07649 * 178.99498 * 19 18 17 21 21 C 1.33475 * 108.44218 * 0.42409 * 20 19 18 22 22 C 1.50791 * 126.60708 * 179.24640 * 21 20 19 23 23 N 1.46502 * 109.46938 * 84.46212 * 22 21 20 24 24 C 1.35491 * 126.97591 * 269.68040 * 23 22 21 25 25 N 1.30525 * 107.30463 * 179.83704 * 24 23 22 26 26 N 1.28598 * 109.67090 * 0.43890 * 25 24 23 27 27 C 1.30522 * 109.67402 * 359.72362 * 26 25 24 28 28 C 1.34025 * 128.81556 * 41.90352 * 18 17 16 29 29 C 1.42709 * 113.48365 * 297.33953 * 14 2 1 30 30 H 1.08999 * 109.46898 * 186.33849 * 1 2 3 31 31 H 1.09000 * 109.46745 * 306.33580 * 1 2 3 32 32 H 1.08994 * 109.47733 * 66.33250 * 1 2 3 33 33 H 1.09002 * 109.46690 * 304.97457 * 4 2 1 34 34 H 1.08997 * 109.47336 * 64.97253 * 4 2 1 35 35 H 1.09002 * 109.46755 * 304.53699 * 5 4 2 36 36 H 1.09001 * 109.47437 * 64.53634 * 5 4 2 37 37 H 0.96993 * 120.00341 * 180.02562 * 9 8 6 38 38 H 1.09699 * 110.09675 * 280.23631 * 15 14 2 39 39 H 1.09990 * 109.83941 * 37.67436 * 15 14 2 40 40 H 1.08863 * 109.67837 * 209.25333 * 16 15 14 41 41 H 1.08951 * 110.03104 * 330.65641 * 16 15 14 42 42 H 1.08935 * 109.72819 * 38.68488 * 17 16 15 43 43 H 1.09145 * 109.69977 * 159.31825 * 17 16 15 44 44 H 1.08997 * 109.46859 * 204.45858 * 22 21 20 45 45 H 1.09003 * 109.47194 * 324.45868 * 22 21 20 46 46 H 1.07998 * 126.35123 * 359.97438 * 24 23 22 47 47 H 1.07995 * 126.34637 * 179.97438 * 27 26 25 48 48 H 1.11349 * 109.12735 * 47.02591 * 29 14 2 49 49 H 1.11590 * 108.13121 * 295.87620 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5650 -0.6138 1.3133 6 6 4.0766 -1.4173 2.4810 7 1 3.3935 -2.0159 3.0653 8 6 5.4168 -1.3884 2.8034 9 7 5.8801 -2.1636 3.7594 10 14 6.5746 -0.2480 1.8822 11 1 6.7217 1.0227 2.6364 12 1 7.9027 -0.8978 1.7435 13 1 6.0200 0.0374 0.5346 14 7 2.0195 -0.6922 -1.1991 15 6 2.0794 0.1650 -2.3449 16 6 3.0234 -0.3309 -3.4351 17 6 2.2130 -1.2248 -4.3785 18 7 2.1159 -2.5556 -3.7681 19 7 2.2710 -3.6430 -4.4580 20 7 2.1600 -4.6682 -3.6949 21 6 1.9131 -4.2455 -2.4531 22 6 1.6955 -5.1087 -1.2361 23 7 2.9912 -5.4718 -0.6569 24 6 3.7394 -6.5620 -0.9527 25 7 4.8170 -6.5042 -0.2185 26 7 4.7812 -5.4526 0.5209 27 6 3.6819 -4.7887 0.2877 28 6 1.8885 -2.8778 -2.4872 29 6 1.6422 -2.0674 -1.2557 30 1 -0.3633 -1.0214 0.1135 31 1 -0.3633 0.6089 0.8279 32 1 -0.3634 0.4125 -0.9411 33 1 1.6058 -0.2616 2.1369 34 1 1.7514 -1.7715 1.2057 35 1 3.9956 -1.0005 0.3896 36 1 3.8507 0.4307 1.4379 37 1 6.8229 -2.1430 3.9865 38 1 1.0812 0.2744 -2.7864 39 1 2.4068 1.1704 -2.0422 40 1 3.4239 0.5177 -3.9870 41 1 3.8341 -0.9085 -2.9923 42 1 1.2182 -0.8039 -4.5198 43 1 2.7215 -1.3002 -5.3413 44 1 1.1100 -4.5579 -0.5000 45 1 1.1595 -6.0134 -1.5233 46 1 3.4913 -7.3344 -1.6656 47 1 3.3789 -3.8661 0.7602 48 1 0.5582 -2.1584 -1.0182 49 1 2.1282 -2.5962 -0.4017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500140.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:44 Heat of formation + Delta-G solvation = 193.778151 kcal Electronic energy + Delta-G solvation = -32401.553162 eV Core-core repulsion = 28403.006214 eV Total energy + Delta-G solvation = -3998.546948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.63475 -42.59035 -39.11961 -36.46786 -35.27036 -33.53332 -32.71229 -32.36436 -30.88043 -30.08695 -29.62241 -27.55780 -27.22395 -25.72683 -25.23901 -22.57843 -22.00685 -21.88425 -21.30859 -21.15087 -20.56446 -19.23652 -17.94610 -17.48881 -16.68985 -16.36324 -16.24515 -16.02014 -15.26506 -15.03728 -14.70201 -14.42866 -14.20896 -14.17920 -13.79481 -13.67814 -13.47448 -13.23401 -12.98045 -12.83747 -12.57971 -12.38837 -12.13758 -12.00264 -11.93855 -11.60010 -11.53730 -11.43935 -11.11389 -10.99878 -10.78259 -10.57095 -10.32087 -10.04077 -9.93434 -9.89716 -9.79404 -9.57075 -9.23977 -9.10879 -8.95811 -8.41028 -7.80851 -5.94712 -3.92836 1.24480 1.95213 2.05829 2.27902 2.99302 3.36317 3.40585 3.42406 3.47311 3.48381 3.92906 4.04620 4.27078 4.29344 4.43805 4.54318 4.56435 4.71632 4.84223 4.88821 4.93418 4.99777 5.11233 5.14104 5.17052 5.20556 5.31059 5.35971 5.39544 5.43090 5.55523 5.58987 5.75682 5.78074 5.81833 5.87952 5.94178 6.06119 6.10944 6.28002 6.29862 6.48256 6.56660 6.87636 7.16548 7.19836 7.33691 7.52292 7.55217 7.89027 8.24282 8.59744 9.09008 9.21424 9.69206 11.18285 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.007980 B = 0.005739 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.016857 B = 4877.522157 C = 6868.220705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.121 3.879 3 H 0.083 0.917 4 C -0.103 4.103 5 C -0.004 4.004 6 C -0.529 4.529 7 H 0.069 0.931 8 C 0.077 3.923 9 N -0.892 5.892 10 Si 0.873 3.127 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.265 1.265 14 N -0.611 5.611 15 C 0.106 3.894 16 C -0.148 4.148 17 C 0.109 3.891 18 N -0.281 5.281 19 N -0.098 5.098 20 N -0.239 5.239 21 C -0.074 4.074 22 C 0.200 3.800 23 N -0.479 5.479 24 C 0.146 3.854 25 N -0.306 5.306 26 N -0.283 5.283 27 C 0.172 3.828 28 C 0.050 3.950 29 C 0.171 3.829 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.020 0.980 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.212 0.788 47 H 0.226 0.774 48 H 0.049 0.951 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.331 3.603 -15.840 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.015 3.985 3 H 0.101 0.899 4 C -0.141 4.141 5 C -0.041 4.041 6 C -0.567 4.567 7 H 0.087 0.913 8 C -0.126 4.126 9 N -0.530 5.530 10 Si 0.700 3.300 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.190 1.190 14 N -0.338 5.338 15 C -0.021 4.021 16 C -0.187 4.187 17 C -0.011 4.011 18 N -0.072 5.072 19 N -0.076 5.076 20 N -0.104 5.104 21 C -0.215 4.215 22 C 0.075 3.925 23 N -0.172 5.172 24 C -0.142 4.142 25 N -0.144 5.144 26 N -0.120 5.120 27 C -0.115 4.115 28 C -0.087 4.087 29 C 0.043 3.957 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.023 0.977 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.228 0.772 47 H 0.242 0.758 48 H 0.066 0.934 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.239 2.527 -16.534 21.332 hybrid contribution -1.325 1.674 -0.365 2.165 sum -14.564 4.200 -16.899 22.701 Atomic orbital electron populations 1.22423 0.98197 1.01955 1.01453 1.21580 0.91417 0.97585 0.87880 0.89879 1.21712 0.99639 0.98890 0.93873 1.19486 0.90639 0.96265 0.97708 1.21053 0.93807 1.28471 1.13377 0.91267 1.24940 0.98084 0.94958 0.94602 1.69893 1.14530 1.37970 1.30569 0.86897 0.80898 0.81117 0.81039 1.20862 1.21557 1.18980 1.51978 1.73530 1.01205 1.07046 1.20952 0.96568 0.95681 0.88899 1.22244 0.99431 1.00298 0.96695 1.22611 1.03079 0.77080 0.98353 1.47220 1.45004 1.09274 1.05677 1.78607 1.21575 0.87371 1.20094 1.74743 1.13656 1.21417 1.00628 1.22078 1.12837 0.91199 0.95402 1.19894 0.82704 0.99551 0.90372 1.46576 1.18791 1.20002 1.31793 1.26412 0.90943 0.93249 1.03574 1.74309 1.18259 1.14888 1.06985 1.74431 1.16978 1.01763 1.18857 1.26997 0.90843 1.01009 0.92648 1.21540 1.04634 0.95584 0.86965 1.19318 0.99633 0.86096 0.90692 0.92574 0.91703 0.93508 0.92025 0.92922 0.95870 0.97687 0.92789 0.96191 0.90011 0.87918 0.88983 0.88260 0.87000 0.86833 0.86747 0.77199 0.75804 0.93400 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.81 37.16 0.33 -1.39 16 2 C 0.12 1.44 2.31 -67.74 -0.16 1.29 16 3 H 0.08 1.00 7.54 -51.93 -0.39 0.61 16 4 C -0.10 -1.63 4.32 -26.73 -0.12 -1.74 16 5 C 0.00 -0.08 3.90 -27.88 -0.11 -0.18 16 6 C -0.53 -13.90 9.65 -34.44 -0.33 -14.24 16 7 H 0.07 1.95 7.99 -52.49 -0.42 1.53 16 8 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 9 N -0.89 -27.33 13.96 55.43 0.77 -26.56 16 10 Si 0.87 21.80 27.42 -169.99 -4.66 17.14 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.27 -6.33 6.65 56.52 0.38 -5.95 16 14 N -0.61 -7.09 2.86 -232.47 -0.66 -7.76 16 15 C 0.11 0.96 5.19 -6.03 -0.03 0.93 16 16 C -0.15 -1.25 5.81 -26.91 -0.16 -1.41 16 17 C 0.11 0.86 6.76 -3.83 -0.03 0.84 16 18 N -0.28 -3.31 3.49 -57.13 -0.20 -3.51 16 19 N -0.10 -1.38 13.04 60.35 0.79 -0.59 16 20 N -0.24 -3.44 12.41 33.53 0.42 -3.03 16 21 C -0.07 -0.92 6.82 -82.34 -0.56 -1.49 16 22 C 0.20 2.03 6.21 -5.15 -0.03 2.00 16 23 N -0.48 -6.73 2.73 -121.21 -0.33 -7.06 16 24 C 0.15 2.20 12.74 -89.94 -1.15 1.05 16 25 N -0.31 -6.07 12.21 29.69 0.36 -5.70 16 26 N -0.28 -6.24 12.21 29.69 0.36 -5.87 16 27 C 0.17 3.11 12.48 -89.95 -1.12 1.98 16 28 C 0.05 0.60 6.65 -82.73 -0.55 0.05 16 29 C 0.17 1.95 4.22 -7.78 -0.03 1.91 16 30 H 0.06 0.52 6.66 -51.93 -0.35 0.17 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.40 7.80 -51.93 -0.41 0.00 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.80 6.34 -51.93 -0.33 0.47 16 35 H 0.02 0.51 7.25 -51.93 -0.38 0.13 16 36 H 0.00 0.11 7.14 -51.93 -0.37 -0.27 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.02 0.16 7.14 -51.53 -0.37 -0.21 16 39 H 0.08 0.71 7.63 -51.37 -0.39 0.31 16 40 H 0.10 0.60 8.13 -52.01 -0.42 0.18 16 41 H 0.09 1.11 8.02 -51.96 -0.42 0.69 16 42 H 0.10 0.59 7.39 -51.97 -0.38 0.21 16 43 H 0.11 0.74 8.15 -51.85 -0.42 0.32 16 44 H 0.11 0.89 7.26 -51.93 -0.38 0.51 16 45 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.21 2.28 8.06 -52.49 -0.42 1.85 16 47 H 0.23 3.99 7.13 -52.49 -0.37 3.62 16 48 H 0.05 0.47 6.23 -50.57 -0.31 0.16 16 49 H 0.10 1.27 4.58 -50.43 -0.23 1.04 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -36.42 385.74 -8.68 -45.10 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.19 Total: 0.34 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -4.14 Total: -8.30 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 1.51 Total: -60.08 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.66 Total: 17.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.42 -8.68 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500140.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.878 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds