Wall clock time and date at job start Wed Apr 1 2020 03:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47543 * 2 1 4 4 C 1.53001 * 109.47576 * 120.00567 * 2 1 3 5 5 C 1.53001 * 109.47228 * 184.98108 * 4 2 1 6 6 C 1.50697 * 109.47206 * 184.54043 * 5 4 2 7 7 H 1.08001 * 119.99830 * 4.99293 * 6 5 4 8 8 C 1.37875 * 120.00357 * 184.99344 * 6 5 4 9 9 N 1.31511 * 120.00498 * 184.96076 * 8 6 5 10 10 Si 1.86805 * 119.99468 * 4.96108 * 8 6 5 11 11 H 1.48502 * 109.46852 * 94.66278 * 10 8 6 12 12 H 1.48500 * 109.46658 * 214.65308 * 10 8 6 13 13 H 1.48490 * 109.47395 * 334.65401 * 10 8 6 14 14 N 1.46854 * 109.46902 * 240.00475 * 2 1 3 15 15 C 1.43219 * 112.65178 * 84.29491 * 14 2 1 16 16 C 1.52492 * 113.78248 * 158.92590 * 15 14 2 17 17 C 1.53167 * 107.61103 * 89.95391 * 16 15 14 18 18 N 1.46729 * 107.94616 * 278.66790 * 17 16 15 19 19 N 1.29703 * 122.08691 * 222.94930 * 18 17 16 20 20 N 1.28283 * 110.07649 * 178.99498 * 19 18 17 21 21 C 1.33475 * 108.44218 * 0.42409 * 20 19 18 22 22 C 1.50791 * 126.60708 * 179.24640 * 21 20 19 23 23 N 1.46502 * 109.46938 * 84.46212 * 22 21 20 24 24 C 1.35491 * 126.97591 * 269.68040 * 23 22 21 25 25 N 1.30525 * 107.30463 * 179.83704 * 24 23 22 26 26 N 1.28598 * 109.67090 * 0.43890 * 25 24 23 27 27 C 1.30522 * 109.67402 * 359.72362 * 26 25 24 28 28 C 1.34025 * 128.81556 * 41.90352 * 18 17 16 29 29 C 1.42709 * 113.48365 * 297.33953 * 14 2 1 30 30 H 1.08999 * 109.46898 * 186.33849 * 1 2 3 31 31 H 1.09000 * 109.46745 * 306.33580 * 1 2 3 32 32 H 1.08994 * 109.47733 * 66.33250 * 1 2 3 33 33 H 1.09002 * 109.46690 * 304.97457 * 4 2 1 34 34 H 1.08997 * 109.47336 * 64.97253 * 4 2 1 35 35 H 1.09002 * 109.46755 * 304.53699 * 5 4 2 36 36 H 1.09001 * 109.47437 * 64.53634 * 5 4 2 37 37 H 0.96993 * 120.00341 * 180.02562 * 9 8 6 38 38 H 1.09699 * 110.09675 * 280.23631 * 15 14 2 39 39 H 1.09990 * 109.83941 * 37.67436 * 15 14 2 40 40 H 1.08863 * 109.67837 * 209.25333 * 16 15 14 41 41 H 1.08951 * 110.03104 * 330.65641 * 16 15 14 42 42 H 1.08935 * 109.72819 * 38.68488 * 17 16 15 43 43 H 1.09145 * 109.69977 * 159.31825 * 17 16 15 44 44 H 1.08997 * 109.46859 * 204.45858 * 22 21 20 45 45 H 1.09003 * 109.47194 * 324.45868 * 22 21 20 46 46 H 1.07998 * 126.35123 * 359.97438 * 24 23 22 47 47 H 1.07995 * 126.34637 * 179.97438 * 27 26 25 48 48 H 1.11349 * 109.12735 * 47.02591 * 29 14 2 49 49 H 1.11590 * 108.13121 * 295.87620 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5650 -0.6138 1.3133 6 6 4.0766 -1.4173 2.4810 7 1 3.3935 -2.0159 3.0653 8 6 5.4168 -1.3884 2.8034 9 7 5.8801 -2.1636 3.7594 10 14 6.5746 -0.2480 1.8822 11 1 6.7217 1.0227 2.6364 12 1 7.9027 -0.8978 1.7435 13 1 6.0200 0.0374 0.5346 14 7 2.0195 -0.6922 -1.1991 15 6 2.0794 0.1650 -2.3449 16 6 3.0234 -0.3309 -3.4351 17 6 2.2130 -1.2248 -4.3785 18 7 2.1159 -2.5556 -3.7681 19 7 2.2710 -3.6430 -4.4580 20 7 2.1600 -4.6682 -3.6949 21 6 1.9131 -4.2455 -2.4531 22 6 1.6955 -5.1087 -1.2361 23 7 2.9912 -5.4718 -0.6569 24 6 3.7394 -6.5620 -0.9527 25 7 4.8170 -6.5042 -0.2185 26 7 4.7812 -5.4526 0.5209 27 6 3.6819 -4.7887 0.2877 28 6 1.8885 -2.8778 -2.4872 29 6 1.6422 -2.0674 -1.2557 30 1 -0.3633 -1.0214 0.1135 31 1 -0.3633 0.6089 0.8279 32 1 -0.3634 0.4125 -0.9411 33 1 1.6058 -0.2616 2.1369 34 1 1.7514 -1.7715 1.2057 35 1 3.9956 -1.0005 0.3896 36 1 3.8507 0.4307 1.4379 37 1 6.8229 -2.1430 3.9865 38 1 1.0812 0.2744 -2.7864 39 1 2.4068 1.1704 -2.0422 40 1 3.4239 0.5177 -3.9870 41 1 3.8341 -0.9085 -2.9923 42 1 1.2182 -0.8039 -4.5198 43 1 2.7215 -1.3002 -5.3413 44 1 1.1100 -4.5579 -0.5000 45 1 1.1595 -6.0134 -1.5233 46 1 3.4913 -7.3344 -1.6656 47 1 3.3789 -3.8661 0.7602 48 1 0.5582 -2.1584 -1.0182 49 1 2.1282 -2.5962 -0.4017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500140.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:43 Heat of formation + Delta-G solvation = 171.059926 kcal Electronic energy + Delta-G solvation = -32402.538298 eV Core-core repulsion = 28403.006214 eV Total energy + Delta-G solvation = -3999.532084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.56672 -43.89768 -39.99905 -37.35965 -36.36926 -35.15935 -33.82062 -33.56733 -32.19695 -31.47031 -30.78553 -28.48111 -28.04465 -27.02246 -26.38294 -23.72555 -23.20621 -23.10488 -22.30984 -22.16014 -21.89607 -20.22675 -18.82216 -18.70141 -18.52875 -17.35140 -17.20351 -17.00957 -16.28613 -16.22364 -15.98367 -15.80404 -15.54452 -15.12819 -14.86448 -14.79891 -14.44157 -14.30386 -14.19191 -13.89055 -13.70465 -13.43607 -13.21737 -13.14946 -12.92086 -12.81960 -12.66213 -12.47321 -12.40596 -12.29148 -11.93347 -11.74728 -11.52203 -11.39918 -11.29480 -11.26428 -11.24635 -11.13138 -10.98667 -10.58727 -10.38304 -10.19716 -8.63403 -8.15828 -6.14820 0.33783 0.86883 1.09851 1.30075 1.34415 1.40357 1.48686 1.92163 2.00947 2.43758 2.57414 3.09755 3.23544 3.30870 3.47368 3.58471 3.70435 3.74756 3.84381 3.90260 4.05774 4.11118 4.13541 4.22006 4.28564 4.39963 4.44465 4.50999 4.55666 4.56226 4.62430 4.72475 4.80519 4.89263 4.91708 4.94425 5.02035 5.02724 5.11295 5.17277 5.25604 5.33143 5.47425 5.49081 5.69207 5.79029 5.85769 6.01777 6.33835 6.44333 6.73099 6.95030 7.29317 7.49887 7.83931 9.00179 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.007980 B = 0.005739 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.016857 B = 4877.522157 C = 6868.220705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.130 3.870 3 H 0.087 0.913 4 C -0.098 4.098 5 C 0.004 3.996 6 C -0.514 4.514 7 H 0.038 0.962 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.930 3.070 11 H -0.270 1.270 12 H -0.304 1.304 13 H -0.245 1.245 14 N -0.628 5.628 15 C 0.099 3.901 16 C -0.141 4.141 17 C 0.102 3.898 18 N -0.276 5.276 19 N -0.121 5.121 20 N -0.263 5.263 21 C -0.080 4.080 22 C 0.195 3.805 23 N -0.464 5.464 24 C 0.169 3.831 25 N -0.354 5.354 26 N -0.348 5.348 27 C 0.173 3.827 28 C 0.047 3.953 29 C 0.176 3.824 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.005 0.995 37 H 0.257 0.743 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.052 0.948 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.255 0.745 47 H 0.220 0.780 48 H 0.072 0.928 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 5.474 -18.607 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.025 3.975 3 H 0.105 0.895 4 C -0.136 4.136 5 C -0.033 4.033 6 C -0.552 4.552 7 H 0.057 0.943 8 C -0.184 4.184 9 N -0.586 5.586 10 Si 0.756 3.244 11 H -0.196 1.196 12 H -0.232 1.232 13 H -0.168 1.168 14 N -0.356 5.356 15 C -0.027 4.027 16 C -0.180 4.180 17 C -0.016 4.016 18 N -0.067 5.067 19 N -0.099 5.099 20 N -0.128 5.128 21 C -0.222 4.222 22 C 0.072 3.928 23 N -0.156 5.156 24 C -0.120 4.120 25 N -0.192 5.192 26 N -0.185 5.185 27 C -0.116 4.116 28 C -0.091 4.091 29 C 0.047 3.953 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.150 0.850 41 H 0.070 0.930 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.271 0.729 47 H 0.236 0.764 48 H 0.089 0.911 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.082 4.435 -19.352 25.550 hybrid contribution -0.539 1.083 0.461 1.294 sum -16.622 5.518 -18.891 25.761 Atomic orbital electron populations 1.22307 0.95699 1.02456 1.02608 1.21364 0.93220 0.96862 0.86068 0.89499 1.21587 0.95686 0.99958 0.96371 1.19366 0.94478 0.94792 0.94710 1.21488 0.92933 1.27112 1.13696 0.94333 1.25780 1.00233 0.96676 0.95680 1.70062 1.14540 1.40725 1.33276 0.85965 0.78104 0.79405 0.80914 1.19571 1.23153 1.16842 1.51899 1.74221 1.01494 1.07938 1.21102 0.97970 0.95373 0.88224 1.22219 0.98136 1.00759 0.96849 1.22997 1.04811 0.75356 0.98483 1.47545 1.43667 1.09965 1.05552 1.78540 1.22610 0.88034 1.20689 1.74697 1.14553 1.22121 1.01447 1.22377 1.12696 0.91774 0.95399 1.20384 0.80951 1.01327 0.90162 1.46650 1.19591 1.18896 1.30446 1.27151 0.89340 0.93445 1.02082 1.74177 1.21053 1.15233 1.08753 1.74313 1.19495 1.03490 1.21200 1.26744 0.90641 1.00770 0.93457 1.21718 1.04365 0.95681 0.87358 1.19205 1.00595 0.85934 0.89535 0.92268 0.91304 0.91734 0.92317 0.92642 0.96450 0.97669 0.93365 0.93702 0.89313 0.85004 0.92951 0.85405 0.85768 0.84378 0.83472 0.72950 0.76398 0.91127 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 8.81 71.98 0.63 -1.93 16 2 C 0.13 2.72 2.31 44.92 0.10 2.82 16 3 H 0.09 1.78 7.54 -2.39 -0.02 1.76 16 4 C -0.10 -2.95 4.32 30.60 0.13 -2.82 16 5 C 0.00 0.17 3.90 29.85 0.12 0.28 16 6 C -0.51 -27.68 9.65 25.60 0.25 -27.44 16 7 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 8 C 0.01 0.78 5.47 84.65 0.46 1.24 16 9 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 10 Si 0.93 45.72 27.42 68.60 1.88 47.60 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 13 H -0.25 -11.09 6.65 99.48 0.66 -10.43 16 14 N -0.63 -12.74 2.86 -889.39 -2.54 -15.28 16 15 C 0.10 1.42 5.19 86.82 0.45 1.87 16 16 C -0.14 -1.95 5.81 30.48 0.18 -1.77 16 17 C 0.10 1.28 6.76 86.39 0.58 1.86 16 18 N -0.28 -5.86 3.49 -334.65 -1.17 -7.03 16 19 N -0.12 -3.18 13.04 37.02 0.48 -2.70 16 20 N -0.26 -7.15 12.41 -47.83 -0.59 -7.74 16 21 C -0.08 -1.85 6.82 42.01 0.29 -1.56 16 22 C 0.19 3.50 6.21 85.66 0.53 4.03 16 23 N -0.46 -12.66 2.73 -537.41 -1.47 -14.12 16 24 C 0.17 4.92 12.74 180.11 2.30 7.22 16 25 N -0.35 -14.42 12.21 -59.99 -0.73 -15.15 16 26 N -0.35 -16.04 12.21 -59.99 -0.73 -16.78 16 27 C 0.17 6.44 12.48 180.11 2.25 8.69 16 28 C 0.05 1.02 6.65 41.51 0.28 1.30 16 29 C 0.18 3.57 4.22 85.95 0.36 3.93 16 30 H 0.06 0.86 6.66 -2.39 -0.02 0.84 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.78 7.80 -2.39 -0.02 0.76 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.63 6.34 -2.39 -0.02 1.61 16 35 H 0.02 0.75 7.25 -2.39 -0.02 0.73 16 36 H 0.00 0.21 7.14 -2.39 -0.02 0.19 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.05 0.45 7.14 -2.01 -0.01 0.44 16 39 H 0.09 1.16 7.63 -1.86 -0.01 1.15 16 40 H 0.13 1.03 8.13 -2.46 -0.02 1.01 16 41 H 0.05 1.19 8.02 -2.41 -0.02 1.17 16 42 H 0.13 0.91 7.39 -2.42 -0.02 0.90 16 43 H 0.12 1.26 8.15 -2.31 -0.02 1.24 16 44 H 0.14 1.80 7.26 -2.39 -0.02 1.78 16 45 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.25 4.79 8.06 -2.91 -0.02 4.77 16 47 H 0.22 8.18 7.13 -2.91 -0.02 8.16 16 48 H 0.07 1.13 6.23 -1.11 -0.01 1.12 16 49 H 0.08 1.88 4.58 -0.98 0.00 1.87 16 Total: -1.00 -85.06 385.74 5.28 -79.78 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.94 Total: 14.00 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 8.91 Total: -2.27 kcal Atomic # 7 Polarization: -132.66 SS G_CDS: -6.45 Total: -139.11 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -85.06 5.28 -79.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500140.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.836 kcal (2) G-P(sol) polarization free energy of solvation -85.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds