Wall clock time and date at job start Wed Apr 1 2020 03:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47433 * 270.00147 * 3 2 1 5 5 H 1.48495 * 109.47040 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.47069 * 149.99865 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47452 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47414 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00271 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00161 * 179.97438 * 17 16 15 20 20 H 1.08993 * 109.25292 * 299.47565 * 19 17 16 21 21 C 1.52725 * 109.25408 * 179.97438 * 19 17 16 22 22 C 1.53323 * 108.42309 * 188.44213 * 21 19 17 23 23 C 1.52771 * 108.35093 * 69.89930 * 22 21 19 24 24 C 1.50499 * 110.55719 * 309.19595 * 23 22 21 25 25 C 1.39188 * 117.97318 * 197.29271 * 24 23 22 26 26 C 1.38414 * 118.86973 * 180.20604 * 25 24 23 27 27 C 1.38235 * 118.84105 * 0.02702 * 26 25 24 28 28 N 1.31515 * 120.61071 * 359.91312 * 27 26 25 29 29 C 1.32699 * 122.39857 * 359.95628 * 28 27 26 30 30 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 33 33 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 34 34 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 38 38 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 39 39 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 40 40 H 1.09002 * 109.47153 * 300.00216 * 14 13 12 41 41 H 1.09001 * 109.47289 * 60.00300 * 14 13 12 42 42 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 43 43 H 1.09001 * 109.46812 * 59.99783 * 15 14 13 44 44 H 0.97006 * 119.99677 * 359.97438 * 16 15 14 45 45 H 1.08995 * 109.67213 * 308.17594 * 21 19 17 46 46 H 1.09002 * 109.67219 * 68.67639 * 21 19 17 47 47 H 1.09003 * 109.69282 * 189.61140 * 22 21 19 48 48 H 1.09004 * 109.69328 * 310.18332 * 22 21 19 49 49 H 1.08997 * 109.26058 * 69.47024 * 23 22 21 50 50 H 1.09000 * 109.26494 * 188.91763 * 23 22 21 51 51 H 1.08000 * 120.56798 * 0.18374 * 25 24 23 52 52 H 1.08001 * 120.57575 * 179.97438 * 26 25 24 53 53 H 1.08003 * 119.69469 * 179.88843 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 0.0008 13 6 0.8349 -7.3076 0.0008 14 6 1.6000 -8.6326 0.0008 15 6 0.6058 -9.7956 0.0001 16 7 1.3383 -11.0643 0.0007 17 6 0.6645 -12.2316 -0.0002 18 8 -0.5484 -12.2316 -0.0011 19 6 1.4181 -13.5366 -0.0002 20 1 2.0369 -13.5944 -0.8955 21 6 0.4213 -14.6938 -0.0007 22 6 1.1951 -16.0000 0.2129 23 6 1.7126 -16.0230 1.6502 24 6 2.4378 -14.7440 1.9712 25 6 3.2782 -14.7308 3.0807 26 6 3.9511 -13.5630 3.3956 27 6 3.7646 -12.4500 2.5973 28 7 2.9632 -12.4997 1.5556 29 6 2.3024 -13.6000 1.2188 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6849 -3.7144 0.8895 33 1 2.6849 -3.7145 -0.8904 34 1 0.4376 -4.7618 0.8903 35 1 0.4371 -4.7622 -0.8897 36 1 2.4557 -6.2028 -0.8892 37 1 2.4558 -6.2020 0.8907 38 1 0.2079 -7.2496 0.8905 39 1 0.2086 -7.2502 -0.8895 40 1 2.2267 -8.6903 -0.8892 41 1 2.2266 -8.6904 0.8908 42 1 -0.0212 -9.7381 0.8899 43 1 -0.0205 -9.7377 -0.8901 44 1 2.3084 -11.0642 0.0011 45 1 -0.2991 -14.5578 0.8059 46 1 -0.1007 -14.7280 -0.9570 47 1 0.5334 -16.8502 0.0473 48 1 2.0349 -16.0471 -0.4805 49 1 0.8714 -16.1405 2.3333 50 1 2.3950 -16.8639 1.7733 51 1 3.4028 -15.6166 3.6859 52 1 4.6097 -13.5218 4.2506 53 1 4.2814 -11.5309 2.8314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179353147.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:15 Heat of formation + Delta-G solvation = -49.006802 kcal Electronic energy + Delta-G solvation = -28729.821060 eV Core-core repulsion = 24791.993759 eV Total energy + Delta-G solvation = -3937.827301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.00472 -40.35412 -37.99551 -37.38926 -36.64353 -35.31123 -34.42890 -33.40347 -31.67418 -31.35133 -30.81928 -28.29828 -26.11586 -25.32468 -24.24770 -24.17665 -23.29456 -22.19416 -22.01722 -21.36010 -20.62689 -19.12366 -18.27186 -17.68087 -17.53457 -16.97966 -16.86511 -16.65398 -16.46742 -16.06468 -15.40154 -15.38582 -15.27514 -15.12686 -14.90663 -14.64669 -14.55395 -14.07800 -13.94388 -13.81873 -13.61462 -13.45941 -13.30152 -13.04461 -12.95587 -12.87352 -12.64023 -12.40241 -12.18081 -12.11032 -12.01867 -11.87191 -11.81484 -11.80325 -11.52137 -11.48992 -11.35780 -11.00176 -10.93925 -10.58450 -10.38139 -9.99291 -9.71088 -9.02056 -7.96632 -5.26443 0.11541 0.31721 1.46300 1.49090 1.57645 1.59242 2.25583 2.55466 2.81178 3.14943 3.36688 3.47341 3.70544 3.79926 3.84320 3.87177 4.00092 4.02223 4.10606 4.15373 4.23133 4.24777 4.31440 4.33055 4.37726 4.41671 4.53714 4.58491 4.62918 4.66935 4.77469 4.82582 4.85153 4.89096 4.95876 4.96865 4.99251 5.05277 5.10887 5.14421 5.18800 5.27335 5.27991 5.35056 5.37759 5.39243 5.46801 5.52708 5.53698 5.56163 5.76676 6.25898 6.62799 6.95778 7.29933 7.31209 8.08233 8.31373 9.27225 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023021 B = 0.001374 C = 0.001313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.988666 B =20375.501213 C =21316.769552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.252 4.252 8 H 0.076 0.924 9 N -0.751 5.751 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.102 4.102 13 C -0.112 4.112 14 C -0.114 4.114 15 C 0.120 3.880 16 N -0.702 5.702 17 C 0.517 3.483 18 O -0.589 6.589 19 C -0.050 4.050 20 H 0.128 0.872 21 C -0.099 4.099 22 C -0.114 4.114 23 C -0.079 4.079 24 C -0.124 4.124 25 C -0.081 4.081 26 C -0.168 4.168 27 C 0.089 3.911 28 N -0.508 5.508 29 C 0.111 3.889 30 H 0.252 0.748 31 H 0.373 0.627 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.418 0.582 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.100 0.900 51 H 0.161 0.839 52 H 0.161 0.839 53 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 -42.206 4.352 43.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.022 3.978 11 C -0.154 4.154 12 C -0.141 4.141 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.004 4.004 16 N -0.355 5.355 17 C 0.303 3.697 18 O -0.470 6.470 19 C -0.072 4.072 20 H 0.146 0.854 21 C -0.138 4.138 22 C -0.152 4.152 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.107 4.107 26 C -0.188 4.188 27 C -0.070 4.070 28 N -0.217 5.217 29 C -0.024 4.024 30 H 0.061 0.939 31 H 0.204 0.796 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.258 0.742 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.119 0.881 51 H 0.179 0.821 52 H 0.179 0.821 53 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.902 -41.343 3.844 42.465 hybrid contribution 0.206 0.832 0.583 1.037 sum 9.108 -40.511 4.427 41.758 Atomic orbital electron populations 1.69830 1.06751 1.26190 1.59431 1.25653 0.96481 1.01362 1.03505 0.85070 0.77674 0.79035 0.77555 1.21196 1.21986 1.19284 1.19707 0.91612 0.85520 1.41506 0.90578 1.42669 1.05686 1.01548 1.89482 1.20871 0.94399 0.85034 0.97482 1.21635 0.98096 0.94339 1.01373 1.21404 0.97885 0.92043 1.02718 1.21443 0.98067 0.93140 1.02342 1.21649 0.97674 0.92146 1.03703 1.21315 0.95107 0.83016 1.00997 1.46095 1.11666 1.04746 1.72995 1.20772 0.87367 0.86467 0.75060 1.90678 1.15740 1.88348 1.52283 1.20207 0.96390 0.93064 0.97498 0.85402 1.21397 0.96359 0.92780 1.03216 1.21594 1.00466 0.96780 0.96325 1.20543 0.99964 0.93459 0.97695 1.20690 0.98956 0.96881 0.96073 1.21994 0.93733 0.99661 0.95320 1.22480 1.01009 0.93593 1.01676 1.23066 0.94125 0.99709 0.90068 1.67232 1.07937 1.27989 1.18534 1.20590 0.96007 0.89756 0.96054 0.93933 0.79595 0.96284 0.96231 0.92792 0.92702 0.91208 0.91313 0.92135 0.91853 0.90184 0.90468 0.93385 0.92458 0.74233 0.92521 0.90365 0.88966 0.90463 0.89972 0.88149 0.82149 0.82095 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.16 29.55 68.60 2.03 49.18 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -40.56 5.60 -343.46 -1.92 -42.48 16 10 C 0.15 6.22 6.26 86.38 0.54 6.76 16 11 C -0.12 -3.87 5.33 30.59 0.16 -3.71 16 12 C -0.10 -2.49 5.21 30.59 0.16 -2.33 16 13 C -0.11 -2.35 5.21 30.59 0.16 -2.19 16 14 C -0.11 -1.97 5.33 30.60 0.16 -1.81 16 15 C 0.12 2.50 5.67 86.38 0.49 2.99 16 16 N -0.70 -13.90 4.96 -463.05 -2.29 -16.20 16 17 C 0.52 11.82 7.06 87.66 0.62 12.44 16 18 O -0.59 -18.19 15.83 -3.05 -0.05 -18.23 16 19 C -0.05 -0.78 2.71 -12.37 -0.03 -0.82 16 20 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.10 -1.36 4.65 30.61 0.14 -1.22 16 22 C -0.11 -0.81 5.98 30.63 0.18 -0.62 16 23 C -0.08 -0.53 5.68 29.71 0.17 -0.37 16 24 C -0.12 -1.41 5.74 -19.85 -0.11 -1.53 16 25 C -0.08 -0.68 9.75 22.54 0.22 -0.46 16 26 C -0.17 -1.42 10.12 22.31 0.23 -1.19 16 27 C 0.09 1.06 11.19 84.74 0.95 2.01 16 28 N -0.51 -8.03 7.54 -184.01 -1.39 -9.42 16 29 C 0.11 1.70 6.20 42.28 0.26 1.96 16 30 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.37 21.30 7.67 -92.70 -0.71 20.59 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.42 6.91 6.80 -92.70 -0.63 6.28 16 45 H 0.06 1.02 7.78 -2.39 -0.02 1.00 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.08 0.44 8.10 -2.38 -0.02 0.42 16 49 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.10 0.26 8.13 -2.39 -0.02 0.24 16 51 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 52 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 53 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -76.93 424.52 1.81 -75.12 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.45 Total: 31.23 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 5.60 Total: -8.11 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -5.32 Total: -129.19 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -76.93 1.81 -75.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179353147.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.117 kcal (2) G-P(sol) polarization free energy of solvation -76.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds