Wall clock time and date at job start Wed Apr 1 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99562 * 2 1 4 4 C 1.50705 * 109.46862 * 269.99539 * 3 2 1 5 5 H 1.07997 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99906 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99971 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00115 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47182 * 59.99674 * 8 6 4 10 10 H 1.48498 * 109.47383 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47143 * 300.00040 * 8 6 4 12 12 C 1.39673 * 120.00476 * 179.97438 * 2 1 3 13 13 C 1.38913 * 120.07019 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92415 * 179.97438 * 13 12 2 15 15 C 1.38285 * 120.07208 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.92419 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47107 * 89.99664 * 16 15 14 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46950 * 180.02562 * 18 17 16 20 20 H 1.09006 * 109.47315 * 305.00021 * 19 18 17 21 21 O 1.42904 * 109.47412 * 65.00415 * 19 18 17 22 22 C 1.52999 * 109.46980 * 185.00261 * 19 18 17 23 23 N 1.46501 * 109.47370 * 174.99988 * 22 19 18 24 24 C 1.35316 * 125.87181 * 124.99451 * 23 22 19 25 25 C 1.35346 * 106.17628 * 180.02562 * 24 23 22 26 26 N 1.33771 * 106.49860 * 0.02562 * 25 24 23 27 27 N 1.28635 * 108.88274 * 359.73716 * 26 25 24 28 28 C 1.38286 * 120.15383 * 0.26802 * 15 14 13 29 29 C 1.38108 * 120.06868 * 359.45265 * 28 15 14 30 30 H 1.08997 * 109.47317 * 270.00304 * 1 2 3 31 31 H 1.09003 * 109.47130 * 30.00514 * 1 2 3 32 32 H 1.09003 * 109.46996 * 150.00104 * 1 2 3 33 33 H 1.08996 * 109.47807 * 29.99582 * 3 2 1 34 34 H 1.09005 * 109.47199 * 149.99714 * 3 2 1 35 35 H 0.96996 * 119.99884 * 180.02562 * 7 6 4 36 36 H 1.07997 * 120.03863 * 359.95889 * 13 12 2 37 37 H 1.07999 * 119.96140 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47152 * 329.99751 * 16 15 14 39 39 H 1.09001 * 109.46980 * 209.99852 * 16 15 14 40 40 H 1.00902 * 111.00582 * 303.95889 * 17 16 15 41 41 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 42 42 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 43 43 H 0.96701 * 113.99575 * 59.99413 * 21 19 18 44 44 H 1.09001 * 109.47177 * 294.99779 * 22 19 18 45 45 H 1.08998 * 109.47319 * 55.00163 * 22 19 18 46 46 H 1.08003 * 126.90788 * 0.03043 * 24 23 22 47 47 H 1.08001 * 126.74561 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.96544 * 179.70952 * 28 15 14 49 49 H 1.08005 * 120.03586 * 180.27157 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6729 7 7 3.5540 3.6177 -0.6733 8 14 3.4388 3.4163 -3.4340 9 1 2.1415 3.5940 -4.1346 10 1 4.1811 4.7025 -3.4341 11 1 4.2413 2.3810 -4.1336 12 6 2.1635 -1.2095 0.0005 13 6 1.4705 -2.4135 0.0016 14 6 2.1641 -3.6077 0.0016 15 6 3.5470 -3.6058 0.0011 16 6 4.3006 -4.9109 0.0017 17 7 4.5448 -5.3359 -1.3831 18 6 5.2796 -6.6073 -1.4218 19 6 5.5152 -7.0162 -2.8772 20 1 4.5616 -7.0491 -3.4043 21 8 6.3747 -6.0636 -3.5064 22 6 6.1690 -8.3988 -2.9190 23 7 6.2857 -8.8419 -4.3106 24 6 7.4261 -9.2326 -4.9253 25 6 7.0796 -9.5547 -6.1934 26 7 5.7617 -9.3475 -6.2913 27 7 5.3204 -8.9304 -5.1573 28 6 4.2400 -2.4091 0.0061 29 6 3.5525 -1.2113 0.0003 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0285 0.5137 34 1 3.1499 1.1386 0.5139 35 1 4.0307 4.4436 -0.8506 36 1 0.3905 -2.4156 0.0027 37 1 1.6260 -4.5440 0.0029 38 1 3.7117 -5.6702 0.5163 39 1 5.2532 -4.7801 0.5150 40 1 3.6802 -5.4017 -1.8991 41 1 6.2390 -6.4880 -0.9184 42 1 4.6979 -7.3786 -0.9169 43 1 7.2431 -5.9814 -3.0890 44 1 7.1610 -8.3454 -2.4704 45 1 5.5561 -9.1076 -2.3623 46 1 8.4140 -9.2783 -4.4913 47 1 7.7379 -9.9085 -6.9730 48 1 5.3200 -2.4112 0.0104 49 1 4.0943 -0.2770 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202748926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:49 Heat of formation + Delta-G solvation = 90.068356 kcal Electronic energy + Delta-G solvation = -28711.150329 eV Core-core repulsion = 24675.813436 eV Total energy + Delta-G solvation = -4035.336893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.53015 -39.16202 -38.59052 -36.40280 -34.87789 -34.63313 -32.70935 -31.36674 -31.11528 -30.45804 -29.46563 -27.80984 -26.78096 -25.12189 -23.84558 -23.13384 -22.44064 -22.10128 -21.64170 -21.50426 -19.59875 -18.28490 -17.12385 -16.96691 -16.62130 -16.44750 -15.97482 -15.59149 -15.26680 -15.09820 -14.95845 -14.53180 -14.48161 -14.21388 -14.01744 -13.72914 -13.44746 -13.03438 -12.96373 -12.88340 -12.55602 -12.15288 -12.05002 -11.87800 -11.81154 -11.62812 -11.40998 -11.24073 -11.19687 -11.05018 -10.91473 -10.72700 -10.66801 -10.26308 -10.16123 -9.91313 -9.76147 -9.68893 -8.88771 -8.50491 -8.49039 -8.28430 -6.48070 -6.01820 -4.16768 1.28047 1.91079 2.09568 2.18547 2.31314 3.30242 3.34107 3.38567 3.60361 3.73635 4.10156 4.13997 4.15639 4.35967 4.42565 4.45910 4.59705 4.65049 4.68619 4.78874 4.90707 5.08386 5.19923 5.22168 5.25291 5.30178 5.52148 5.52329 5.56594 5.70998 5.81411 5.84307 6.01253 6.06715 6.18800 6.26339 6.37317 6.42201 6.61465 6.79354 6.93999 7.01222 7.12830 7.21043 7.25542 7.31373 7.36143 7.58488 7.81582 8.15432 8.21660 8.25710 8.47235 8.91895 9.50155 10.96187 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.001954 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.346327 B =14327.897928 C =15760.878213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.243 3.757 13 C -0.222 4.222 14 C -0.067 4.067 15 C -0.176 4.176 16 C 0.118 3.882 17 N -0.674 5.674 18 C 0.030 3.970 19 C 0.099 3.901 20 H 0.115 0.885 21 O -0.535 6.535 22 C 0.081 3.919 23 N -0.282 5.282 24 C -0.050 4.050 25 C -0.053 4.053 26 N -0.272 5.272 27 N -0.080 5.080 28 C -0.049 4.049 29 C -0.188 4.188 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.346 0.654 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.372 0.628 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.189 0.811 47 H 0.189 0.811 48 H 0.111 0.889 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -25.980 1.366 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.136 3.864 13 C -0.245 4.245 14 C -0.087 4.087 15 C -0.179 4.179 16 C -0.010 4.010 17 N -0.306 5.306 18 C -0.100 4.100 19 C 0.038 3.962 20 H 0.133 0.867 21 O -0.339 6.339 22 C -0.041 4.041 23 N -0.076 5.076 24 C -0.201 4.201 25 C -0.210 4.210 26 N -0.138 5.138 27 N -0.060 5.060 28 C -0.069 4.069 29 C -0.211 4.211 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.164 0.836 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.219 0.781 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.206 0.794 47 H 0.206 0.794 48 H 0.129 0.871 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.912 -24.906 0.746 25.609 hybrid contribution 1.220 -0.393 -0.047 1.283 sum 7.133 -25.300 0.699 26.295 Atomic orbital electron populations 1.21478 0.81499 1.01967 0.99672 1.47118 1.04397 1.04647 1.75827 1.19293 0.92073 0.78714 0.97017 1.21536 1.36465 1.06443 0.92607 0.92296 1.24959 0.95379 0.96276 0.97443 1.69918 1.38314 1.14377 1.30826 0.86577 0.78478 0.77864 0.84686 1.20249 1.21197 1.19991 1.17969 0.91543 0.85988 0.90931 1.20520 0.98980 0.91389 1.13651 1.20497 0.93294 0.96515 0.98383 1.19108 0.93069 0.93747 1.11973 1.20654 0.98660 0.93593 0.88085 1.60416 1.27333 1.28472 1.14379 1.22557 1.00281 0.92096 0.95090 1.22245 0.95203 0.84440 0.94309 0.86731 1.86781 1.28723 1.61138 1.57291 1.22945 1.05101 0.99207 0.76894 1.47294 1.06194 1.42075 1.12001 1.23659 0.93705 1.07382 0.95349 1.23624 0.93592 1.06863 0.96949 1.75138 1.10309 1.14468 1.13885 1.78297 1.14877 1.18145 0.94724 1.20626 0.98691 0.91328 0.96211 1.20904 0.92666 0.98859 1.08652 0.94608 0.91414 0.92689 0.95195 0.94604 0.92602 0.86919 0.87764 0.95394 0.91021 0.83568 0.90302 0.94221 0.78075 0.87119 0.87326 0.79417 0.79430 0.87067 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.19 59.85 0.61 2.33 16 2 N -0.61 -13.17 2.99 -181.00 -0.54 -13.71 16 3 C 0.25 6.25 4.91 -5.19 -0.03 6.22 16 4 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 7 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.24 4.91 6.55 -83.79 -0.55 4.36 16 13 C -0.22 -3.82 9.21 -39.38 -0.36 -4.18 16 14 C -0.07 -1.01 9.69 -39.61 -0.38 -1.40 16 15 C -0.18 -2.60 5.39 -104.59 -0.56 -3.16 16 16 C 0.12 1.30 5.81 -4.98 -0.03 1.27 16 17 N -0.67 -7.03 6.44 -115.05 -0.74 -7.77 16 18 C 0.03 0.20 5.32 -3.82 -0.02 0.18 16 19 C 0.10 0.69 3.23 -26.73 -0.09 0.61 16 20 H 0.11 1.08 8.00 -51.93 -0.42 0.66 16 21 O -0.54 -5.05 13.23 -35.23 -0.47 -5.52 16 22 C 0.08 0.36 6.09 -4.04 -0.02 0.33 16 23 N -0.28 -2.28 3.39 -61.26 -0.21 -2.49 16 24 C -0.05 -0.32 11.57 -17.05 -0.20 -0.52 16 25 C -0.05 -0.45 12.05 -17.74 -0.21 -0.66 16 26 N -0.27 -3.41 12.41 30.23 0.38 -3.03 16 27 N -0.08 -0.97 12.83 60.35 0.77 -0.19 16 28 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 29 C -0.19 -3.81 9.21 -39.38 -0.36 -4.17 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 37 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 39 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.35 3.82 8.72 -39.29 -0.34 3.47 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.37 2.04 9.05 45.56 0.41 2.46 16 44 H 0.11 0.12 8.07 -51.93 -0.42 -0.30 16 45 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.19 0.39 8.06 -52.48 -0.42 -0.03 16 47 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 49 H 0.13 2.94 6.14 -52.48 -0.32 2.62 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -35.05 410.95 -8.57 -43.62 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.66 Total: 4.63 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.01 Total: -13.32 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.40 Total: -52.17 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.47 Total: -5.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.05 -8.57 -43.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202748926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.687 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds