Wall clock time and date at job start Wed Apr 1 2020 03:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48496 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47122 * 300.00408 * 3 2 1 6 6 H 1.48500 * 109.47339 * 60.00235 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38104 * 119.92852 * 179.74739 * 11 10 9 13 13 C 1.38296 * 120.06820 * 0.53125 * 12 11 10 14 14 C 1.50705 * 119.92847 * 179.72020 * 13 12 11 15 15 N 1.46901 * 109.47175 * 270.02189 * 14 13 12 16 16 C 1.47594 * 110.99903 * 298.83812 * 15 14 13 17 17 C 1.50798 * 107.97176 * 151.52552 * 16 15 14 18 18 N 1.47723 * 111.78816 * 94.62735 * 17 16 15 19 19 C 1.48052 * 113.80967 * 318.96159 * 18 17 16 20 20 C 1.50806 * 113.20636 * 318.12299 * 19 18 17 21 21 C 1.53143 * 110.40142 * 211.36154 * 20 19 18 22 22 C 1.53100 * 109.26518 * 181.63588 * 21 20 19 23 23 C 1.53143 * 109.12255 * 302.18571 * 22 21 20 24 24 C 1.53050 * 109.25640 * 57.69075 * 23 22 21 25 25 N 1.46807 * 110.89883 * 332.85227 * 20 19 18 26 26 C 1.40099 * 110.99796 * 170.00110 * 15 14 13 27 27 C 1.38303 * 120.14120 * 359.74604 * 13 12 11 28 28 C 1.38099 * 120.06407 * 359.97438 * 27 13 12 29 29 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.03720 * 0.03026 * 11 10 9 31 31 H 1.08007 * 119.96381 * 180.27376 * 12 11 10 32 32 H 1.08997 * 109.46883 * 30.02683 * 14 13 12 33 33 H 1.09001 * 109.46606 * 150.02392 * 14 13 12 34 34 H 1.08997 * 109.76281 * 271.13995 * 16 15 14 35 35 H 1.08995 * 109.76826 * 31.90645 * 16 15 14 36 36 H 1.09004 * 109.01163 * 334.04196 * 17 16 15 37 37 H 1.08987 * 108.95905 * 215.18895 * 17 16 15 38 38 H 1.00900 * 110.99761 * 192.87748 * 18 17 16 39 39 H 1.09000 * 108.73544 * 197.16394 * 19 18 17 40 40 H 1.08996 * 108.63914 * 79.01705 * 19 18 17 41 41 H 1.09004 * 109.50534 * 301.57375 * 21 20 19 42 42 H 1.08997 * 109.50601 * 61.69816 * 21 20 19 43 43 H 1.09006 * 109.53117 * 182.29499 * 22 21 20 44 44 H 1.09002 * 109.58939 * 62.11273 * 22 21 20 45 45 H 1.08991 * 109.51026 * 297.75366 * 23 22 21 46 46 H 1.09002 * 109.54295 * 177.64651 * 23 22 21 47 47 H 1.09006 * 109.45124 * 180.87663 * 24 23 22 48 48 H 1.09000 * 109.43403 * 60.93634 * 24 23 22 49 49 H 1.00899 * 111.00455 * 300.38083 * 25 20 19 50 50 H 1.08998 * 109.07292 * 308.89559 * 26 15 14 51 51 H 1.09001 * 109.06783 * 67.84915 * 26 15 14 52 52 H 1.07996 * 119.96539 * 180.02562 * 27 13 12 53 53 H 1.08007 * 120.03117 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 1.4365 -4.7340 0.2336 12 6 2.1873 -5.8885 0.3360 13 6 3.5685 -5.8204 0.3223 14 6 4.3848 -7.0817 0.4407 15 7 4.6566 -7.3579 1.8576 16 6 5.4309 -6.2613 2.4712 17 6 5.0888 -6.2148 3.9391 18 7 6.0547 -6.9821 4.7518 19 6 6.4617 -8.2677 4.1407 20 6 5.3127 -9.0192 3.5167 21 6 5.5481 -10.5294 3.6118 22 6 4.3881 -11.2650 2.9356 23 6 3.0747 -10.8574 3.6094 24 6 2.9102 -9.3385 3.5170 25 7 4.0455 -8.6794 4.1753 26 6 5.2143 -8.6325 2.0227 27 6 4.2023 -4.5972 0.2007 28 6 3.4571 -3.4396 0.0921 29 1 -0.4850 0.8401 0.0004 30 1 0.3579 -4.7874 0.2484 31 1 1.6953 -6.8453 0.4312 32 1 3.8310 -7.9148 0.0078 33 1 5.3272 -6.9559 -0.0923 34 1 6.4974 -6.4489 2.3472 35 1 5.1654 -5.3146 2.0008 36 1 4.0921 -6.6315 4.0848 37 1 5.0913 -5.1766 4.2706 38 1 5.7086 -7.1209 5.6894 39 1 6.9128 -8.8940 4.9104 40 1 7.2077 -8.0672 3.3717 41 1 6.4821 -10.7845 3.1111 42 1 5.6041 -10.8237 4.6598 43 1 4.5307 -12.3410 3.0365 44 1 4.3533 -10.9995 1.8790 45 1 3.0941 -11.1583 4.6568 46 1 2.2399 -11.3452 3.1061 47 1 1.9836 -9.0431 4.0094 48 1 2.8753 -9.0406 2.4690 49 1 4.0759 -8.9075 5.1577 50 1 4.5921 -9.3632 1.5059 51 1 6.2127 -8.6437 1.5853 52 1 5.2811 -4.5473 0.1899 53 1 3.9526 -2.4847 -0.0032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222675399.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:56 Heat of formation + Delta-G solvation = 11.441422 kcal Electronic energy + Delta-G solvation = -31918.463694 eV Core-core repulsion = 27983.257625 eV Total energy + Delta-G solvation = -3935.206070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74312 -40.71230 -38.86218 -37.55666 -35.96373 -34.27240 -33.06481 -32.48632 -31.77993 -31.51575 -29.39803 -27.78550 -26.91647 -26.59453 -24.67889 -23.83391 -23.59464 -22.22180 -21.83995 -20.89550 -19.96111 -19.78834 -18.76951 -17.57957 -17.25007 -16.57663 -16.38097 -16.35657 -16.20355 -15.85043 -15.56439 -15.46900 -15.31334 -15.11731 -14.92772 -14.69805 -14.36226 -14.16515 -13.91365 -13.65689 -13.48619 -13.44500 -13.32089 -12.97899 -12.93958 -12.71291 -12.45863 -12.39094 -12.27031 -12.23594 -12.09514 -12.04774 -11.88057 -11.79727 -11.54557 -11.36858 -11.13341 -10.98484 -10.76364 -9.69960 -9.43298 -9.01033 -8.79789 -8.60490 -8.45414 -6.12985 0.64277 0.72898 1.35461 1.43619 1.53582 2.18769 2.77364 3.04551 3.22056 3.36865 3.56891 3.60422 3.69791 3.92412 3.94318 4.04005 4.07121 4.12710 4.23789 4.25759 4.37856 4.44613 4.46592 4.52689 4.55636 4.64450 4.67030 4.71625 4.74395 4.80248 4.83380 4.84522 4.93107 4.99237 5.04269 5.10220 5.12916 5.16067 5.17866 5.18464 5.28434 5.34009 5.35689 5.48950 5.62344 5.65920 5.75256 5.86444 6.05799 6.16377 6.23494 6.25535 6.36254 6.59466 6.69514 6.76016 6.99852 7.81986 8.78278 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.002558 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.820979 B =10941.313237 C =11468.568490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.410 4.410 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.115 3.885 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.145 4.145 14 C 0.119 3.881 15 N -0.532 5.532 16 C 0.065 3.935 17 C 0.065 3.935 18 N -0.690 5.690 19 C 0.075 3.925 20 C 0.095 3.905 21 C -0.134 4.134 22 C -0.118 4.118 23 C -0.151 4.151 24 C 0.066 3.934 25 N -0.657 5.657 26 C 0.083 3.917 27 C -0.062 4.062 28 C -0.241 4.241 29 H 0.272 0.728 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.344 0.656 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.334 0.666 50 H 0.079 0.921 51 H 0.013 0.987 52 H 0.130 0.870 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -23.916 8.250 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.486 4.486 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.065 3.935 11 C -0.223 4.223 12 C -0.061 4.061 13 C -0.146 4.146 14 C -0.007 4.007 15 N -0.255 5.255 16 C -0.061 4.061 17 C -0.065 4.065 18 N -0.320 5.320 19 C -0.055 4.055 20 C 0.002 3.998 21 C -0.175 4.175 22 C -0.156 4.156 23 C -0.190 4.190 24 C -0.064 4.064 25 N -0.286 5.286 26 C -0.046 4.046 27 C -0.080 4.080 28 C -0.261 4.261 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.161 0.839 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.152 0.848 50 H 0.097 0.903 51 H 0.031 0.969 52 H 0.147 0.853 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.105 -22.828 7.841 27.465 hybrid contribution -0.025 -0.248 -0.113 0.273 sum 13.081 -23.075 7.728 27.628 Atomic orbital electron populations 1.70195 1.07987 1.28632 1.49233 1.26556 0.96836 1.02665 0.96017 0.84552 0.78234 0.75003 0.78567 1.17561 1.19309 1.19353 1.21823 0.92405 0.81503 1.52875 0.88293 1.83941 1.35963 1.12602 1.81609 1.19900 0.91498 0.87901 0.94178 1.20442 0.99792 0.90657 1.11422 1.20748 0.93222 0.96552 0.95587 1.19503 0.93558 0.94412 1.07155 1.20776 0.97110 0.94437 0.88375 1.58767 1.51117 1.01720 1.13909 1.21829 0.94447 0.94545 0.95327 1.21710 0.97198 0.95932 0.91612 1.60500 1.46211 1.19374 1.05879 1.21790 0.95242 0.89340 0.99131 1.21499 0.90963 0.93353 0.94031 1.22165 0.99136 0.94701 1.01462 1.21595 0.94314 0.99945 0.99725 1.22210 0.97995 0.97926 1.00875 1.21893 0.93162 0.90732 1.00609 1.60579 1.01786 1.60473 1.05781 1.21267 0.96886 0.90693 0.95799 1.20849 0.99124 0.91279 0.96796 1.21170 0.93110 0.99791 1.11990 0.91907 0.87204 0.83957 0.89385 0.94404 0.94852 0.91089 0.89908 0.94153 0.83910 0.90415 0.92456 0.91049 0.91193 0.91481 0.91922 0.92090 0.91567 0.91865 0.90993 0.84807 0.90300 0.96879 0.85252 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.43 13.67 21.61 0.30 -57.13 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.69 29.55 68.60 2.03 45.71 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.41 -24.28 9.49 67.92 0.64 -23.64 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.35 9.76 -22.78 -0.22 -14.57 16 10 C 0.12 5.83 6.65 22.58 0.15 5.98 16 11 C -0.20 -8.78 9.99 22.39 0.22 -8.56 16 12 C -0.04 -1.43 9.69 22.25 0.22 -1.22 16 13 C -0.15 -4.47 4.87 -19.83 -0.10 -4.57 16 14 C 0.12 2.76 5.13 85.56 0.44 3.20 16 15 N -0.53 -11.55 3.12 -916.76 -2.86 -14.41 16 16 C 0.07 1.62 5.18 85.45 0.44 2.06 16 17 C 0.06 1.56 6.00 85.43 0.51 2.07 16 18 N -0.69 -13.26 6.64 -516.82 -3.43 -16.69 16 19 C 0.08 1.18 5.44 85.37 0.46 1.65 16 20 C 0.10 1.37 0.57 3.44 0.00 1.37 16 21 C -0.13 -1.48 4.70 30.68 0.14 -1.34 16 22 C -0.12 -1.32 5.69 30.68 0.17 -1.15 16 23 C -0.15 -1.82 6.08 30.66 0.19 -1.64 16 24 C 0.07 1.04 6.18 86.33 0.53 1.57 16 25 N -0.66 -10.21 2.84 -470.90 -1.34 -11.54 16 26 C 0.08 1.45 2.99 88.09 0.26 1.72 16 27 C -0.06 -2.15 7.71 22.25 0.17 -1.98 16 28 C -0.24 -10.66 9.17 22.39 0.21 -10.46 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.09 1.77 7.79 -2.39 -0.02 1.75 16 33 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 34 H 0.03 0.83 6.75 -2.39 -0.02 0.81 16 35 H 0.07 2.05 4.50 -2.39 -0.01 2.04 16 36 H 0.08 2.17 5.72 -2.39 -0.01 2.15 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.34 5.73 8.91 -89.69 -0.80 4.93 16 39 H 0.08 0.98 7.77 -2.39 -0.02 0.97 16 40 H 0.06 1.05 6.50 -2.39 -0.02 1.03 16 41 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.06 0.77 6.11 -2.39 -0.01 0.76 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 48 H 0.07 1.37 6.12 -2.39 -0.01 1.36 16 49 H 0.33 4.56 8.83 -89.69 -0.79 3.76 16 50 H 0.08 1.30 4.44 -2.39 -0.01 1.29 16 51 H 0.01 0.24 7.61 -2.39 -0.02 0.23 16 52 H 0.13 3.81 7.57 -2.91 -0.02 3.79 16 53 H 0.11 5.19 5.64 -2.91 -0.02 5.18 16 Total: -1.00 -68.27 386.91 -1.03 -69.30 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.65 Total: 35.16 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 5.14 Total: -35.82 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -7.33 Total: -99.78 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.22 Total: -14.57 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.27 -1.03 -69.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222675399.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.745 kcal (2) G-P(sol) polarization free energy of solvation -68.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds