Wall clock time and date at job start Wed Apr 1 2020 03:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 109.47429 * 2 1 4 4 C 1.46894 * 109.47236 * 239.99755 * 2 1 3 5 5 C 1.46904 * 109.46756 * 119.99804 * 2 1 3 6 6 C 1.53002 * 109.46956 * 63.97644 * 5 2 1 7 7 H 1.08999 * 109.46951 * 178.68083 * 6 5 2 8 8 C 1.50698 * 109.46777 * 298.67604 * 6 5 2 9 9 H 1.08000 * 119.99541 * 114.03816 * 8 6 5 10 10 C 1.37876 * 120.00314 * 294.02636 * 8 6 5 11 11 N 1.31510 * 120.00068 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00080 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46777 * 90.00738 * 12 10 8 14 14 H 1.48502 * 109.47058 * 210.00257 * 12 10 8 15 15 H 1.48497 * 109.47258 * 330.00742 * 12 10 8 16 16 O 1.42894 * 109.47294 * 58.67774 * 6 5 2 17 17 C 1.42904 * 113.99999 * 88.56377 * 16 6 5 18 18 C 1.50707 * 109.47139 * 183.09630 * 17 16 6 19 19 N 1.30827 * 125.95849 * 90.02339 * 18 17 16 20 20 C 1.33240 * 109.83060 * 179.97438 * 19 18 17 21 21 N 1.30717 * 108.94602 * 0.26353 * 20 19 18 22 22 N 1.34424 * 125.96263 * 270.00079 * 18 17 16 23 23 C 1.46504 * 126.82356 * 0.02562 * 22 18 17 24 24 C 1.50697 * 109.47285 * 89.99850 * 23 22 18 25 25 C 1.38240 * 119.99892 * 269.72550 * 24 23 22 26 26 C 1.38229 * 119.99934 * 179.76565 * 25 24 23 27 27 C 1.38236 * 120.00243 * 0.50648 * 26 25 24 28 28 C 1.38235 * 119.99781 * 359.75182 * 27 26 25 29 29 C 1.38233 * 120.00026 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47659 * 280.86847 * 1 2 3 31 31 H 1.09010 * 109.46692 * 40.86376 * 1 2 3 32 32 H 1.08998 * 109.47282 * 160.86230 * 1 2 3 33 33 H 1.08996 * 109.47175 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46975 * 300.00147 * 3 2 1 35 35 H 1.09003 * 109.46995 * 59.99572 * 3 2 1 36 36 H 1.09001 * 109.47668 * 321.45183 * 4 2 1 37 37 H 1.09004 * 109.47135 * 81.45554 * 4 2 1 38 38 H 1.09006 * 109.47405 * 201.45650 * 4 2 1 39 39 H 1.08998 * 109.46845 * 303.97124 * 5 2 1 40 40 H 1.09006 * 109.46793 * 183.97601 * 5 2 1 41 41 H 0.96997 * 120.00834 * 179.97438 * 11 10 8 42 42 H 1.09004 * 109.46682 * 63.10035 * 17 16 6 43 43 H 1.08990 * 109.47197 * 303.09983 * 17 16 6 44 44 H 1.07994 * 125.52877 * 180.02562 * 20 19 18 45 45 H 1.08998 * 109.46868 * 209.99414 * 23 22 18 46 46 H 1.08996 * 109.46749 * 329.99558 * 23 22 18 47 47 H 1.08002 * 119.99605 * 359.97438 * 25 24 23 48 48 H 1.07999 * 120.00203 * 180.23014 * 26 25 24 49 49 H 1.08000 * 120.00478 * 179.71830 * 27 26 25 50 50 H 1.07997 * 120.00186 * 179.97438 * 28 27 26 51 51 H 1.08006 * 120.00368 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1993 5 6 1.9586 -0.6925 1.1995 6 6 1.5318 -2.1610 1.1505 7 1 1.9150 -2.6802 2.0289 8 6 0.0274 -2.2465 1.1330 9 1 -0.4814 -2.6313 0.2615 10 6 -0.6995 -1.8337 2.2294 11 7 -0.0799 -1.3649 3.2905 12 14 -2.5643 -1.9404 2.2079 13 1 -2.9905 -3.2619 2.7343 14 1 -3.1316 -0.8628 3.0578 15 1 -3.0532 -1.7813 0.8148 16 8 2.0574 -2.7706 -0.0302 17 6 3.3639 -3.3255 0.1345 18 6 3.8480 -3.8709 -1.1844 19 7 4.5237 -3.2087 -2.0880 20 6 4.7854 -4.0006 -3.1271 21 7 4.2726 -5.1815 -2.9005 22 7 3.6612 -5.1226 -1.6374 23 6 2.9552 -6.2082 -0.9523 24 6 1.4969 -6.1768 -1.3311 25 6 0.6030 -5.4385 -0.5783 26 6 -0.7338 -5.4058 -0.9286 27 6 -1.1785 -6.1198 -2.0256 28 6 -0.2855 -6.8624 -2.7753 29 6 1.0523 -6.8905 -2.4283 30 1 -0.3634 0.1938 1.0092 31 1 -0.3633 0.7773 -0.6724 32 1 -0.3634 -0.9708 -0.3369 33 1 3.0487 1.3849 0.0005 34 1 1.5954 1.8988 -0.8900 35 1 1.5953 1.8988 0.8900 36 1 1.3221 -1.5524 -1.4079 37 1 1.9358 -0.0091 -2.0483 38 1 2.9816 -1.0300 -1.0320 39 1 1.5382 -0.2213 2.0880 40 1 3.0463 -0.6312 1.2359 41 1 -0.5911 -1.0741 4.0618 42 1 3.3269 -4.1303 0.8688 43 1 4.0473 -2.5498 0.4797 44 1 5.3292 -3.7124 -4.0145 45 1 3.3865 -7.1649 -1.2468 46 1 3.0533 -6.0818 0.1259 47 1 0.9497 -4.8845 0.2816 48 1 -1.4316 -4.8260 -0.3427 49 1 -2.2237 -6.0979 -2.2967 50 1 -0.6330 -7.4205 -3.6320 51 1 1.7500 -7.4711 -3.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224156931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:39 Heat of formation + Delta-G solvation = 185.422713 kcal Electronic energy + Delta-G solvation = -33130.771705 eV Core-core repulsion = 29151.339859 eV Total energy + Delta-G solvation = -3979.431846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.203 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24719 -42.98609 -40.02851 -38.79166 -35.65358 -35.15852 -32.95661 -31.97035 -31.66227 -31.20213 -30.12312 -29.82413 -28.46862 -27.66443 -27.03145 -24.52618 -23.55380 -23.15228 -22.93174 -22.30879 -21.35885 -19.15287 -18.52346 -18.33105 -18.05930 -17.88711 -17.51374 -16.92576 -16.62537 -16.39841 -16.08708 -16.00227 -15.67726 -15.53791 -15.25554 -14.82302 -14.59465 -14.22015 -14.17109 -14.07805 -13.88886 -13.79517 -13.74668 -13.57520 -13.40733 -13.39479 -13.16980 -12.95228 -12.82195 -12.55100 -12.40770 -12.23722 -12.18639 -11.75902 -11.70869 -11.18476 -11.04513 -10.70444 -10.61964 -10.55779 -10.21403 -9.69273 -9.66133 -8.04774 -6.12801 0.26181 0.59258 0.65980 0.69272 1.43205 1.87154 1.87943 1.98908 2.07433 2.54324 2.65307 2.69875 2.71384 2.82099 3.03593 3.28975 3.36017 3.42219 3.46692 3.53771 3.69741 3.74320 3.83920 3.87116 3.90427 3.91264 4.00196 4.10513 4.14757 4.20702 4.24460 4.26661 4.35983 4.40557 4.45776 4.52348 4.59732 4.72336 4.74443 4.85193 4.92695 5.10302 5.14435 5.26017 5.30530 5.46860 5.66141 5.70483 5.76426 5.79452 5.83936 6.03990 6.19754 6.26524 6.96068 7.10712 7.55722 9.01016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.248 5.248 3 C -0.041 4.041 4 C -0.025 4.025 5 C -0.024 4.024 6 C 0.199 3.801 7 H 0.069 0.931 8 C -0.550 4.550 9 H 0.086 0.914 10 C 0.074 3.926 11 N -0.873 5.873 12 Si 0.894 3.106 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.265 1.265 16 O -0.377 6.377 17 C 0.132 3.868 18 C 0.280 3.720 19 N -0.536 5.536 20 C 0.196 3.804 21 N -0.310 5.310 22 N -0.354 5.354 23 C 0.169 3.831 24 C -0.130 4.130 25 C -0.073 4.073 26 C -0.116 4.116 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.092 4.092 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.284 0.716 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.217 0.783 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.138 0.862 48 H 0.127 0.873 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 6.584 -4.693 9.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 N 0.095 4.905 3 C -0.184 4.184 4 C -0.166 4.166 5 C -0.145 4.145 6 C 0.142 3.858 7 H 0.087 0.913 8 C -0.586 4.586 9 H 0.103 0.897 10 C -0.134 4.134 11 N -0.508 5.508 12 Si 0.719 3.281 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.189 1.189 16 O -0.296 6.296 17 C 0.053 3.947 18 C 0.003 3.997 19 N -0.266 5.266 20 C -0.106 4.106 21 N -0.137 5.137 22 N -0.145 5.145 23 C 0.048 3.952 24 C -0.131 4.131 25 C -0.091 4.091 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.148 4.148 29 C -0.111 4.111 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.168 0.832 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.163 0.837 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.233 0.767 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.156 0.844 48 H 0.145 0.855 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.216 6.322 -5.065 9.132 hybrid contribution -0.817 -0.093 0.531 0.979 sum 3.399 6.229 -4.535 8.421 Atomic orbital electron populations 1.24725 0.75907 1.09013 1.07809 1.45699 1.16049 1.13024 1.15754 1.24011 1.04495 0.82074 1.07791 1.24247 1.06017 1.00676 0.85676 1.24736 1.00544 1.01683 0.87540 1.20206 0.95622 0.84909 0.85044 0.91305 1.20905 0.87987 1.46596 1.03134 0.89656 1.24936 1.00191 0.93869 0.94365 1.69715 1.37557 1.38588 1.04902 0.86469 0.82390 0.79894 0.79333 1.19138 1.20198 1.18894 1.88137 1.28990 1.75296 1.37131 1.20661 0.87337 0.98477 0.88223 1.23833 0.95786 0.83095 0.96941 1.70386 1.20362 1.33328 1.02501 1.25942 0.98924 0.87247 0.98509 1.78125 1.16134 1.23216 0.96261 1.50459 1.40213 1.10520 1.13327 1.20704 0.88637 0.89366 0.96481 1.19793 0.93873 1.01280 0.98139 1.21268 0.93012 0.95716 0.99105 1.21216 0.96100 0.99128 0.97001 1.21303 0.99683 0.96382 0.95310 1.21116 0.93363 1.00134 1.00226 1.21020 0.95898 0.98370 0.95783 0.86578 0.90365 0.83156 0.87347 0.87342 0.87032 0.84918 0.89308 0.86966 0.83725 0.89387 0.90595 0.90758 0.90139 0.76672 0.87592 0.87580 0.84446 0.85520 0.86171 0.86136 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.19 6.89 60.06 0.41 0.60 16 2 N -0.25 1.83 0.05 -395.61 -0.02 1.81 16 3 C -0.04 0.42 7.85 60.06 0.47 0.89 16 4 C -0.02 0.17 6.99 60.06 0.42 0.59 16 5 C -0.02 0.11 3.99 -3.82 -0.02 0.09 16 6 C 0.20 -0.25 2.22 -27.88 -0.06 -0.31 16 7 H 0.07 0.09 7.84 -51.93 -0.41 -0.32 16 8 C -0.55 -0.80 5.29 -34.44 -0.18 -0.99 16 9 H 0.09 0.18 7.03 -52.49 -0.37 -0.19 16 10 C 0.07 0.30 3.66 -17.82 -0.07 0.23 16 11 N -0.87 -4.86 11.77 55.43 0.65 -4.21 16 12 Si 0.89 4.50 29.54 -169.99 -5.02 -0.52 16 13 H -0.27 -1.93 7.11 56.52 0.40 -1.53 16 14 H -0.28 -1.79 7.11 56.52 0.40 -1.39 16 15 H -0.26 -1.17 7.11 56.52 0.40 -0.77 16 16 O -0.38 0.88 4.41 -35.23 -0.16 0.72 16 17 C 0.13 -0.32 5.29 36.01 0.19 -0.13 16 18 C 0.28 0.04 7.61 -155.70 -1.19 -1.15 16 19 N -0.54 -0.52 11.19 -11.97 -0.13 -0.66 16 20 C 0.20 0.23 13.03 -91.81 -1.20 -0.97 16 21 N -0.31 -0.84 12.70 29.29 0.37 -0.47 16 22 N -0.35 -0.40 3.62 -59.52 -0.22 -0.62 16 23 C 0.17 -0.06 6.43 -5.19 -0.03 -0.09 16 24 C -0.13 -0.14 5.46 -104.62 -0.57 -0.71 16 25 C -0.07 -0.10 9.40 -39.58 -0.37 -0.47 16 26 C -0.12 -0.22 10.05 -39.59 -0.40 -0.62 16 27 C -0.11 -0.17 10.05 -39.58 -0.40 -0.57 16 28 C -0.13 -0.20 10.05 -39.58 -0.40 -0.60 16 29 C -0.09 -0.15 9.70 -39.58 -0.38 -0.53 16 30 H 0.12 -0.38 6.07 -51.93 -0.32 -0.70 16 31 H 0.08 -0.62 7.81 -51.92 -0.41 -1.03 16 32 H 0.15 -0.53 4.49 -51.93 -0.23 -0.76 16 33 H 0.11 -1.18 8.12 -51.93 -0.42 -1.61 16 34 H 0.11 -1.24 7.87 -51.93 -0.41 -1.65 16 35 H 0.11 -1.12 8.14 -51.93 -0.42 -1.54 16 36 H 0.13 -0.58 5.77 -51.93 -0.30 -0.88 16 37 H 0.09 -0.76 7.77 -51.93 -0.40 -1.16 16 38 H 0.11 -0.66 6.52 -51.93 -0.34 -1.00 16 39 H 0.15 -0.32 6.30 -51.93 -0.33 -0.65 16 40 H 0.09 -0.55 7.65 -51.93 -0.40 -0.95 16 41 H 0.28 1.89 8.31 -40.82 -0.34 1.55 16 42 H 0.07 -0.21 7.12 -51.93 -0.37 -0.58 16 43 H 0.08 -0.31 7.72 -51.93 -0.40 -0.72 16 44 H 0.22 -0.45 8.06 -52.49 -0.42 -0.87 16 45 H 0.11 -0.10 8.09 -51.93 -0.42 -0.52 16 46 H 0.11 -0.25 7.05 -51.93 -0.37 -0.62 16 47 H 0.14 0.16 6.79 -52.49 -0.36 -0.20 16 48 H 0.13 0.20 8.06 -52.49 -0.42 -0.22 16 49 H 0.12 0.02 8.06 -52.49 -0.42 -0.41 16 50 H 0.12 0.01 8.06 -52.49 -0.42 -0.41 16 51 H 0.12 0.11 8.06 -52.48 -0.42 -0.31 16 LS Contribution 395.29 15.07 5.96 5.96 Total: 0.00 -11.89 395.29 -10.24 -22.13 By element: Atomic # 1 Polarization: -11.52 SS G_CDS: -7.91 Total: -19.43 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.76 Total: -4.72 kcal Atomic # 7 Polarization: -4.80 SS G_CDS: 0.66 Total: -4.14 kcal Atomic # 8 Polarization: 0.88 SS G_CDS: -0.16 Total: 0.72 kcal Atomic # 14 Polarization: 4.50 SS G_CDS: -5.02 Total: -0.52 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -11.89 -10.24 -22.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224156931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.554 kcal (2) G-P(sol) polarization free energy of solvation -11.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds