Wall clock time and date at job start Wed Apr 1 2020 03:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 109.47429 * 2 1 4 4 C 1.46894 * 109.47236 * 239.99755 * 2 1 3 5 5 C 1.46904 * 109.46756 * 119.99804 * 2 1 3 6 6 C 1.53002 * 109.46956 * 63.97644 * 5 2 1 7 7 H 1.08999 * 109.46951 * 178.68083 * 6 5 2 8 8 C 1.50698 * 109.46777 * 298.67604 * 6 5 2 9 9 H 1.08000 * 119.99541 * 114.03816 * 8 6 5 10 10 C 1.37876 * 120.00314 * 294.02636 * 8 6 5 11 11 N 1.31510 * 120.00068 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00080 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46777 * 90.00738 * 12 10 8 14 14 H 1.48502 * 109.47058 * 210.00257 * 12 10 8 15 15 H 1.48497 * 109.47258 * 330.00742 * 12 10 8 16 16 O 1.42894 * 109.47294 * 58.67774 * 6 5 2 17 17 C 1.42904 * 113.99999 * 88.56377 * 16 6 5 18 18 C 1.50707 * 109.47139 * 183.09630 * 17 16 6 19 19 N 1.30827 * 125.95849 * 90.02339 * 18 17 16 20 20 C 1.33240 * 109.83060 * 179.97438 * 19 18 17 21 21 N 1.30717 * 108.94602 * 0.26353 * 20 19 18 22 22 N 1.34424 * 125.96263 * 270.00079 * 18 17 16 23 23 C 1.46504 * 126.82356 * 0.02562 * 22 18 17 24 24 C 1.50697 * 109.47285 * 89.99850 * 23 22 18 25 25 C 1.38240 * 119.99892 * 269.72550 * 24 23 22 26 26 C 1.38229 * 119.99934 * 179.76565 * 25 24 23 27 27 C 1.38236 * 120.00243 * 0.50648 * 26 25 24 28 28 C 1.38235 * 119.99781 * 359.75182 * 27 26 25 29 29 C 1.38233 * 120.00026 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47659 * 280.86847 * 1 2 3 31 31 H 1.09010 * 109.46692 * 40.86376 * 1 2 3 32 32 H 1.08998 * 109.47282 * 160.86230 * 1 2 3 33 33 H 1.08996 * 109.47175 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46975 * 300.00147 * 3 2 1 35 35 H 1.09003 * 109.46995 * 59.99572 * 3 2 1 36 36 H 1.09001 * 109.47668 * 321.45183 * 4 2 1 37 37 H 1.09004 * 109.47135 * 81.45554 * 4 2 1 38 38 H 1.09006 * 109.47405 * 201.45650 * 4 2 1 39 39 H 1.08998 * 109.46845 * 303.97124 * 5 2 1 40 40 H 1.09006 * 109.46793 * 183.97601 * 5 2 1 41 41 H 0.96997 * 120.00834 * 179.97438 * 11 10 8 42 42 H 1.09004 * 109.46682 * 63.10035 * 17 16 6 43 43 H 1.08990 * 109.47197 * 303.09983 * 17 16 6 44 44 H 1.07994 * 125.52877 * 180.02562 * 20 19 18 45 45 H 1.08998 * 109.46868 * 209.99414 * 23 22 18 46 46 H 1.08996 * 109.46749 * 329.99558 * 23 22 18 47 47 H 1.08002 * 119.99605 * 359.97438 * 25 24 23 48 48 H 1.07999 * 120.00203 * 180.23014 * 26 25 24 49 49 H 1.08000 * 120.00478 * 179.71830 * 27 26 25 50 50 H 1.07997 * 120.00186 * 179.97438 * 28 27 26 51 51 H 1.08006 * 120.00368 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1993 5 6 1.9586 -0.6925 1.1995 6 6 1.5318 -2.1610 1.1505 7 1 1.9150 -2.6802 2.0289 8 6 0.0274 -2.2465 1.1330 9 1 -0.4814 -2.6313 0.2615 10 6 -0.6995 -1.8337 2.2294 11 7 -0.0799 -1.3649 3.2905 12 14 -2.5643 -1.9404 2.2079 13 1 -2.9905 -3.2619 2.7343 14 1 -3.1316 -0.8628 3.0578 15 1 -3.0532 -1.7813 0.8148 16 8 2.0574 -2.7706 -0.0302 17 6 3.3639 -3.3255 0.1345 18 6 3.8480 -3.8709 -1.1844 19 7 4.5237 -3.2087 -2.0880 20 6 4.7854 -4.0006 -3.1271 21 7 4.2726 -5.1815 -2.9005 22 7 3.6612 -5.1226 -1.6374 23 6 2.9552 -6.2082 -0.9523 24 6 1.4969 -6.1768 -1.3311 25 6 0.6030 -5.4385 -0.5783 26 6 -0.7338 -5.4058 -0.9286 27 6 -1.1785 -6.1198 -2.0256 28 6 -0.2855 -6.8624 -2.7753 29 6 1.0523 -6.8905 -2.4283 30 1 -0.3634 0.1938 1.0092 31 1 -0.3633 0.7773 -0.6724 32 1 -0.3634 -0.9708 -0.3369 33 1 3.0487 1.3849 0.0005 34 1 1.5954 1.8988 -0.8900 35 1 1.5953 1.8988 0.8900 36 1 1.3221 -1.5524 -1.4079 37 1 1.9358 -0.0091 -2.0483 38 1 2.9816 -1.0300 -1.0320 39 1 1.5382 -0.2213 2.0880 40 1 3.0463 -0.6312 1.2359 41 1 -0.5911 -1.0741 4.0618 42 1 3.3269 -4.1303 0.8688 43 1 4.0473 -2.5498 0.4797 44 1 5.3292 -3.7124 -4.0145 45 1 3.3865 -7.1649 -1.2468 46 1 3.0533 -6.0818 0.1259 47 1 0.9497 -4.8845 0.2816 48 1 -1.4316 -4.8260 -0.3427 49 1 -2.2237 -6.0979 -2.2967 50 1 -0.6330 -7.4205 -3.6320 51 1 1.7500 -7.4711 -3.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224156931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:38 Heat of formation + Delta-G solvation = 190.345677 kcal Electronic energy + Delta-G solvation = -33130.558229 eV Core-core repulsion = 29151.339859 eV Total energy + Delta-G solvation = -3979.218371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.203 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.14628 -42.63269 -40.11471 -38.62039 -35.67924 -35.31750 -32.96908 -32.02607 -31.77141 -31.08660 -29.63746 -29.30173 -28.30255 -27.58691 -27.00842 -24.26973 -23.63073 -23.21542 -22.70093 -22.34316 -21.34778 -19.10766 -18.37473 -18.29080 -17.64078 -17.62833 -17.38575 -16.80009 -16.62967 -16.38717 -16.07434 -16.01600 -15.73920 -15.57068 -15.21609 -14.47479 -14.32996 -14.25417 -14.15195 -13.84563 -13.80211 -13.51685 -13.47267 -13.37910 -13.22497 -13.01026 -12.97216 -12.80576 -12.68184 -12.63278 -12.54762 -12.27613 -12.24154 -12.04592 -11.84945 -11.29457 -11.08300 -10.73607 -10.68628 -10.60790 -10.31742 -9.80410 -9.77417 -8.39521 -6.37910 0.18754 0.52593 0.58551 1.22839 1.37813 1.44279 1.50200 1.60223 1.88368 2.27704 2.74661 2.93453 2.94753 3.19492 3.26139 3.32372 3.47882 3.51009 3.67314 3.87570 3.97142 4.09637 4.14032 4.18571 4.20397 4.27451 4.33439 4.35876 4.37490 4.43429 4.49665 4.57753 4.62340 4.65327 4.74621 4.77388 4.80910 4.87551 4.98192 5.01863 5.05166 5.17103 5.22129 5.28381 5.30184 5.47691 5.55481 5.59581 5.62506 5.67359 5.79593 5.86859 6.09405 6.25544 6.74280 7.09095 7.27306 8.65306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.238 5.238 3 C -0.044 4.044 4 C -0.020 4.020 5 C -0.011 4.011 6 C 0.203 3.797 7 H 0.047 0.953 8 C -0.515 4.515 9 H 0.080 0.920 10 C 0.063 3.937 11 N -0.893 5.893 12 Si 0.907 3.093 13 H -0.301 1.301 14 H -0.299 1.299 15 H -0.254 1.254 16 O -0.373 6.373 17 C 0.131 3.869 18 C 0.283 3.717 19 N -0.543 5.543 20 C 0.192 3.808 21 N -0.344 5.344 22 N -0.361 5.361 23 C 0.167 3.833 24 C -0.128 4.128 25 C -0.074 4.074 26 C -0.129 4.129 27 C -0.117 4.117 28 C -0.138 4.138 29 C -0.103 4.103 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.240 0.760 45 H 0.110 0.890 46 H 0.126 0.874 47 H 0.138 0.862 48 H 0.123 0.877 49 H 0.131 0.869 50 H 0.133 0.867 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 7.858 -6.058 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 N 0.104 4.896 3 C -0.185 4.185 4 C -0.161 4.161 5 C -0.134 4.134 6 C 0.146 3.854 7 H 0.065 0.935 8 C -0.553 4.553 9 H 0.098 0.902 10 C -0.141 4.141 11 N -0.530 5.530 12 Si 0.736 3.264 13 H -0.228 1.228 14 H -0.226 1.226 15 H -0.178 1.178 16 O -0.291 6.291 17 C 0.052 3.948 18 C 0.006 3.994 19 N -0.273 5.273 20 C -0.111 4.111 21 N -0.172 5.172 22 N -0.151 5.151 23 C 0.046 3.954 24 C -0.129 4.129 25 C -0.093 4.093 26 C -0.147 4.147 27 C -0.136 4.136 28 C -0.156 4.156 29 C -0.122 4.122 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.120 0.880 44 H 0.256 0.744 45 H 0.129 0.871 46 H 0.144 0.856 47 H 0.156 0.844 48 H 0.141 0.859 49 H 0.149 0.851 50 H 0.151 0.849 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.980 7.600 -6.460 11.629 hybrid contribution -1.384 -0.537 0.855 1.713 sum 4.596 7.063 -5.605 10.121 Atomic orbital electron populations 1.24509 0.77064 1.08805 1.07094 1.45529 1.15039 1.14486 1.14522 1.24213 1.05533 0.79842 1.08928 1.24142 1.04947 1.00629 0.86401 1.24321 1.02086 0.98800 0.88157 1.19914 0.93675 0.87194 0.84608 0.93501 1.21003 0.89770 1.42965 1.01530 0.90174 1.24857 0.98932 0.95220 0.95059 1.69760 1.36589 1.41567 1.05112 0.86351 0.84125 0.76927 0.78985 1.22816 1.22566 1.17756 1.88159 1.29402 1.75470 1.36100 1.20815 0.87444 0.99393 0.87160 1.24240 0.95080 0.82744 0.97323 1.70414 1.20778 1.33421 1.02657 1.26502 0.98466 0.86865 0.99224 1.78077 1.17386 1.24349 0.97345 1.50511 1.40389 1.11110 1.13129 1.20836 0.87597 0.89488 0.97500 1.19913 0.94627 1.00660 0.97706 1.21272 0.92916 0.95902 0.99191 1.21303 0.96434 0.99544 0.97373 1.21476 1.00415 0.96397 0.95280 1.21328 0.93450 1.00203 1.00640 1.21194 0.96130 0.98697 0.96146 0.88792 0.87104 0.85499 0.85757 0.85186 0.87047 0.87410 0.86705 0.87308 0.85570 0.86557 0.92050 0.90146 0.87953 0.74401 0.87144 0.85640 0.84440 0.85871 0.85068 0.84944 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.39 6.89 127.69 0.88 1.27 16 2 N -0.24 3.88 0.05 ******* -0.07 3.81 16 3 C -0.04 1.01 7.85 127.69 1.00 2.01 16 4 C -0.02 0.31 6.99 127.69 0.89 1.20 16 5 C -0.01 0.11 3.99 86.30 0.34 0.46 16 6 C 0.20 -0.50 2.22 29.85 0.07 -0.44 16 7 H 0.05 0.13 7.84 -2.39 -0.02 0.11 16 8 C -0.52 -2.04 5.29 25.60 0.14 -1.90 16 9 H 0.08 0.42 7.03 -2.91 -0.02 0.40 16 10 C 0.06 0.63 3.66 84.65 0.31 0.94 16 11 N -0.89 -11.71 11.77 21.45 0.25 -11.45 16 12 Si 0.91 11.45 29.54 68.60 2.03 13.48 16 13 H -0.30 -5.44 7.11 99.48 0.71 -4.73 16 14 H -0.30 -4.81 7.11 99.48 0.71 -4.10 16 15 H -0.25 -2.60 7.11 99.48 0.71 -1.89 16 16 O -0.37 1.92 4.41 -148.98 -0.66 1.27 16 17 C 0.13 -0.77 5.29 71.24 0.38 -0.40 16 18 C 0.28 -0.18 7.61 138.23 1.05 0.88 16 19 N -0.54 -0.42 11.19 -191.78 -2.15 -2.57 16 20 C 0.19 0.31 13.03 180.76 2.36 2.66 16 21 N -0.34 -1.80 12.70 -61.25 -0.78 -2.58 16 22 N -0.36 -0.69 3.62 -342.21 -1.24 -1.93 16 23 C 0.17 -0.15 6.43 85.63 0.55 0.40 16 24 C -0.13 -0.30 5.46 -19.87 -0.11 -0.41 16 25 C -0.07 -0.25 9.40 22.27 0.21 -0.04 16 26 C -0.13 -0.61 10.05 22.27 0.22 -0.39 16 27 C -0.12 -0.45 10.05 22.27 0.22 -0.23 16 28 C -0.14 -0.49 10.05 22.27 0.22 -0.26 16 29 C -0.10 -0.37 9.70 22.27 0.22 -0.16 16 30 H 0.09 -0.56 6.07 -2.39 -0.01 -0.57 16 31 H 0.11 -1.97 7.81 -2.38 -0.02 -1.99 16 32 H 0.13 -0.85 4.49 -2.39 -0.01 -0.87 16 33 H 0.12 -3.14 8.12 -2.39 -0.02 -3.16 16 34 H 0.13 -3.44 7.87 -2.38 -0.02 -3.46 16 35 H 0.11 -2.44 8.14 -2.39 -0.02 -2.46 16 36 H 0.11 -1.02 5.77 -2.39 -0.01 -1.03 16 37 H 0.11 -2.31 7.77 -2.39 -0.02 -2.33 16 38 H 0.11 -1.52 6.52 -2.38 -0.02 -1.54 16 39 H 0.13 -0.57 6.30 -2.39 -0.02 -0.58 16 40 H 0.12 -1.75 7.65 -2.38 -0.02 -1.76 16 41 H 0.27 4.31 8.31 -92.71 -0.77 3.54 16 42 H 0.08 -0.55 7.12 -2.38 -0.02 -0.56 16 43 H 0.10 -1.03 7.72 -2.39 -0.02 -1.04 16 44 H 0.24 -1.23 8.06 -2.91 -0.02 -1.26 16 45 H 0.11 -0.21 8.09 -2.39 -0.02 -0.23 16 46 H 0.13 -0.66 7.05 -2.39 -0.02 -0.68 16 47 H 0.14 0.39 6.79 -2.91 -0.02 0.37 16 48 H 0.12 0.59 8.06 -2.91 -0.02 0.57 16 49 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 50 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 51 H 0.12 0.29 8.06 -2.91 -0.02 0.27 16 Total: 0.00 -30.54 395.29 7.27 -23.27 By element: Atomic # 1 Polarization: -29.80 SS G_CDS: 0.92 Total: -28.88 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 8.95 Total: 5.59 kcal Atomic # 7 Polarization: -10.74 SS G_CDS: -3.98 Total: -14.72 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: -0.66 Total: 1.27 kcal Atomic # 14 Polarization: 11.45 SS G_CDS: 2.03 Total: 13.48 kcal Total: -30.54 7.27 -23.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224156931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.615 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds