Wall clock time and date at job start Wed Apr 1 2020 03:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99749 * 2 1 4 4 H 1.48505 * 109.46854 * 239.99740 * 3 2 1 5 5 H 1.48491 * 109.47143 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46750 * 120.00254 * 3 2 1 7 7 C 1.38808 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99903 * 156.76232 * 7 2 1 9 9 N 1.36932 * 119.99980 * 336.75986 * 7 2 1 10 10 C 1.46501 * 120.00275 * 145.91783 * 9 7 2 11 11 C 1.52999 * 109.47310 * 269.50145 * 10 9 7 12 12 C 1.52995 * 109.47364 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47060 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99976 * 180.02562 * 13 12 11 15 15 O 1.21279 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00241 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47325 * 179.97438 * 16 14 13 18 18 C 1.54268 * 110.03593 * 292.90960 * 17 16 14 19 19 C 1.54965 * 104.15792 * 217.13622 * 18 17 16 20 20 C 1.54885 * 102.77988 * 37.88476 * 19 18 17 21 21 C 1.53867 * 110.03356 * 175.68812 * 17 16 14 22 22 C 1.46502 * 120.00122 * 325.92164 * 9 7 2 23 23 C 1.50700 * 109.46811 * 269.99895 * 22 9 7 24 24 C 1.38671 * 120.41918 * 270.24812 * 23 22 9 25 25 C 1.38633 * 118.42408 * 180.24222 * 24 23 22 26 26 C 1.38225 * 119.15727 * 359.75739 * 25 24 23 27 27 N 1.31860 * 120.76808 * 359.97438 * 26 25 24 28 28 C 1.31890 * 121.72226 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99432 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47009 * 29.50003 * 10 9 7 31 31 H 1.08997 * 109.47247 * 149.49787 * 10 9 7 32 32 H 1.09001 * 109.46969 * 299.99883 * 11 10 9 33 33 H 1.09004 * 109.47030 * 59.99346 * 11 10 9 34 34 H 1.09001 * 109.47274 * 300.00054 * 12 11 10 35 35 H 1.09004 * 109.47289 * 59.99862 * 12 11 10 36 36 H 0.96999 * 120.00322 * 0.02562 * 13 12 11 37 37 H 1.09001 * 109.46871 * 299.99939 * 16 14 13 38 38 H 1.08997 * 109.47395 * 59.99728 * 16 14 13 39 39 H 1.09005 * 110.01498 * 54.29431 * 17 16 14 40 40 H 1.09002 * 110.48112 * 335.78301 * 18 17 16 41 41 H 1.08999 * 110.48931 * 98.42233 * 18 17 16 42 42 H 1.08993 * 110.71889 * 279.56734 * 19 18 17 43 43 H 1.09008 * 110.91822 * 156.29316 * 19 18 17 44 44 H 1.09001 * 110.48770 * 203.40253 * 20 19 18 45 45 H 1.09002 * 110.60012 * 80.81881 * 20 19 18 46 46 H 1.09005 * 110.03671 * 238.56987 * 21 17 16 47 47 H 1.08993 * 110.03374 * 359.95145 * 21 17 16 48 48 H 1.08996 * 109.47510 * 149.99836 * 22 9 7 49 49 H 1.08998 * 109.47166 * 29.99140 * 22 9 7 50 50 H 1.08005 * 120.79005 * 359.97375 * 24 23 22 51 51 H 1.07991 * 120.42202 * 179.72571 * 25 24 23 52 52 H 1.08006 * 119.61938 * 180.02562 * 26 25 24 53 53 H 1.07991 * 119.61759 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0246 -1.2398 -0.3696 9 7 1.4090 -2.3401 0.4669 10 6 1.7175 -3.6355 -0.1439 11 6 0.7371 -3.9068 -1.2868 12 6 1.0596 -5.2593 -1.9251 13 7 0.1205 -5.5194 -3.0190 14 6 0.2137 -6.6605 -3.7303 15 8 1.0754 -7.4717 -3.4650 16 6 -0.7519 -6.9278 -4.8559 17 6 -0.4295 -8.2803 -5.4942 18 6 0.9377 -8.2164 -6.2060 19 6 0.7446 -9.0829 -7.4761 20 6 -0.7044 -8.7438 -7.9052 21 6 -1.4731 -8.6159 -6.5739 22 6 0.4571 -2.2623 1.5778 23 6 1.1944 -2.4180 2.8828 24 6 1.3846 -3.6753 3.4361 25 6 2.0642 -3.7702 4.6407 26 6 2.5307 -2.6171 5.2434 27 7 2.3362 -1.4382 4.6856 28 6 1.6942 -1.3103 3.5406 29 1 -0.4849 0.8401 -0.0004 30 1 2.7351 -3.6200 -0.5342 31 1 1.6278 -4.4213 0.6060 32 1 -0.2805 -3.9223 -0.8966 33 1 0.8267 -3.1208 -2.0367 34 1 2.0773 -5.2435 -2.3154 35 1 0.9703 -6.0455 -1.1754 36 1 -0.5684 -4.8704 -3.2315 37 1 -1.7696 -6.9431 -4.4656 38 1 -0.6623 -6.1420 -5.6059 39 1 -0.4173 -9.0592 -4.7317 40 1 1.1782 -7.1887 -6.4783 41 1 1.7182 -8.6365 -5.5716 42 1 0.8391 -10.1423 -7.2382 43 1 1.4543 -8.7982 -8.2530 44 1 -1.1213 -9.5486 -8.5107 45 1 -0.7316 -7.8020 -8.4534 46 1 -1.9669 -9.5581 -6.3359 47 1 -2.2098 -7.8156 -6.6426 48 1 -0.2811 -3.0583 1.4803 49 1 -0.0461 -1.2956 1.5580 50 1 1.0084 -4.5592 2.9424 51 1 2.2266 -4.7328 5.1025 52 1 3.0615 -2.6824 6.1818 53 1 1.5537 -0.3280 3.1144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230655855.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:06 Heat of formation + Delta-G solvation = -26.867754 kcal Electronic energy + Delta-G solvation = -29518.173844 eV Core-core repulsion = 25581.306564 eV Total energy + Delta-G solvation = -3936.867280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94300 -40.87411 -38.79604 -37.98997 -36.17752 -33.88655 -33.62514 -32.66318 -32.37047 -31.03708 -29.50332 -27.65812 -27.55335 -26.05099 -24.27106 -23.95320 -22.76369 -21.93402 -21.60806 -21.20125 -20.34659 -18.77948 -18.05662 -17.78661 -17.28981 -16.99792 -16.76115 -16.57421 -16.37952 -15.89659 -15.78588 -15.67618 -15.32399 -15.11805 -14.48556 -14.38109 -14.34779 -14.17447 -14.06766 -13.84375 -13.51694 -13.33157 -13.04120 -12.84508 -12.76732 -12.65723 -12.32481 -12.31078 -12.10169 -11.98254 -11.91310 -11.85257 -11.81684 -11.63221 -11.50401 -11.47387 -11.26470 -10.76220 -10.59700 -10.58061 -10.23740 -10.02096 -9.73363 -8.64571 -7.86889 -5.41117 0.36930 0.51312 1.43128 1.48632 1.53391 1.72233 2.30361 2.49559 2.99939 3.24046 3.66028 3.69174 3.73893 3.74856 3.83119 4.05124 4.08736 4.15703 4.19816 4.29626 4.35154 4.37416 4.38740 4.45375 4.55609 4.60788 4.65936 4.67630 4.71442 4.75352 4.85065 4.87320 4.91832 4.93774 4.99305 5.04049 5.06636 5.12909 5.16230 5.28315 5.33259 5.34762 5.39515 5.46145 5.50871 5.51954 5.56166 5.57805 5.69248 5.77370 5.99697 6.44345 6.63295 7.13432 7.18138 7.32411 7.82370 8.32656 9.09733 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.002049 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.856432 B =13659.618038 C =15186.466845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.020 4.020 3 Si 0.935 3.065 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.260 4.260 8 H 0.049 0.951 9 N -0.585 5.585 10 C 0.150 3.850 11 C -0.123 4.123 12 C 0.133 3.867 13 N -0.724 5.724 14 C 0.504 3.496 15 O -0.584 6.584 16 C -0.129 4.129 17 C -0.076 4.076 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.181 3.819 23 C -0.134 4.134 24 C -0.082 4.082 25 C -0.165 4.165 26 C 0.067 3.933 27 N -0.517 5.517 28 C 0.089 3.911 29 H 0.253 0.747 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.412 0.588 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.079 0.921 50 H 0.146 0.854 51 H 0.167 0.833 52 H 0.179 0.821 53 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -16.278 -7.522 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.219 4.219 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.391 4.391 8 H 0.067 0.933 9 N -0.304 5.304 10 C 0.024 3.976 11 C -0.163 4.163 12 C 0.008 3.992 13 N -0.376 5.376 14 C 0.292 3.708 15 O -0.464 6.464 16 C -0.168 4.168 17 C -0.095 4.095 18 C -0.154 4.154 19 C -0.164 4.164 20 C -0.160 4.160 21 C -0.155 4.155 22 C 0.055 3.945 23 C -0.139 4.139 24 C -0.109 4.109 25 C -0.184 4.184 26 C -0.090 4.090 27 N -0.227 5.227 28 C -0.068 4.068 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.066 0.934 49 H 0.097 0.903 50 H 0.164 0.836 51 H 0.185 0.815 52 H 0.196 0.804 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.988 -15.942 -6.953 17.844 hybrid contribution 0.084 1.019 -0.391 1.095 sum -3.904 -14.923 -7.344 17.085 Atomic orbital electron populations 1.70033 1.06147 1.26084 1.52310 1.25437 0.95432 1.00331 1.00665 0.85856 0.78442 0.81205 0.78109 1.20384 1.21566 1.21358 1.19068 0.94664 0.87317 1.38017 0.93298 1.43892 1.50928 1.02739 1.32804 1.20893 0.96169 0.87202 0.93326 1.22104 1.00813 0.94359 0.99072 1.21166 0.92568 0.96797 0.88670 1.46144 1.35343 1.21625 1.34476 1.21405 0.85341 0.80549 0.83501 1.90662 1.38231 1.47277 1.70215 1.21917 0.99289 0.99849 0.95784 1.21511 0.95323 0.95445 0.97269 1.22370 0.96900 0.99695 0.96391 1.22541 0.97552 0.99550 0.96787 1.22362 0.94597 1.01986 0.97048 1.22217 0.97254 1.02366 0.93662 1.19817 0.90222 1.02652 0.81842 1.22021 0.99596 0.94158 0.98118 1.21760 0.96765 0.96973 0.95393 1.22425 0.98815 1.01063 0.96089 1.23201 0.97877 0.87542 1.00395 1.67596 1.14431 1.29382 1.11247 1.22358 0.94708 0.98757 0.90945 0.93718 0.94258 0.92521 0.92327 0.93313 0.93085 0.92026 0.75238 0.86611 0.87129 0.92179 0.92535 0.93574 0.91730 0.91377 0.90780 0.91177 0.91220 0.90136 0.93383 0.90308 0.83623 0.81507 0.80375 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.45 11.34 21.65 0.25 -48.21 16 2 C -0.02 -1.05 4.94 84.86 0.42 -0.63 16 3 Si 0.93 43.32 29.61 68.60 2.03 45.36 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.26 -13.37 9.48 84.03 0.80 -12.57 16 8 H 0.05 2.60 7.93 -2.91 -0.02 2.57 16 9 N -0.58 -26.32 2.43 -706.36 -1.72 -28.04 16 10 C 0.15 5.58 5.67 86.38 0.49 6.07 16 11 C -0.12 -4.07 5.65 30.59 0.17 -3.90 16 12 C 0.13 3.80 5.67 86.38 0.49 4.29 16 13 N -0.72 -17.65 5.56 -463.06 -2.57 -20.22 16 14 C 0.50 12.68 7.61 87.66 0.67 13.35 16 15 O -0.58 -19.39 14.78 -3.03 -0.04 -19.43 16 16 C -0.13 -2.13 4.83 29.85 0.14 -1.99 16 17 C -0.08 -1.37 2.55 -10.07 -0.03 -1.39 16 18 C -0.12 -2.35 5.40 31.70 0.17 -2.18 16 19 C -0.13 -1.97 6.91 31.91 0.22 -1.75 16 20 C -0.12 -1.51 6.83 31.67 0.22 -1.29 16 21 C -0.12 -1.48 6.46 31.32 0.20 -1.28 16 22 C 0.18 7.79 5.45 85.63 0.47 8.25 16 23 C -0.13 -5.25 5.48 -19.77 -0.11 -5.36 16 24 C -0.08 -2.55 9.86 22.47 0.22 -2.33 16 25 C -0.16 -4.33 10.11 22.36 0.23 -4.10 16 26 C 0.07 2.01 11.18 84.69 0.95 2.95 16 27 N -0.52 -19.97 10.36 -195.84 -2.03 -22.00 16 28 C 0.09 3.75 10.86 84.67 0.92 4.67 16 29 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 31 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.41 8.25 8.47 -92.71 -0.79 7.47 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.11 1.48 8.02 -2.39 -0.02 1.46 16 39 H 0.06 1.30 7.95 -2.38 -0.02 1.28 16 40 H 0.06 1.17 7.77 -2.39 -0.02 1.15 16 41 H 0.05 1.17 7.63 -2.39 -0.02 1.15 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.08 0.80 7.67 -2.39 -0.02 0.78 16 48 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 49 H 0.08 3.95 5.28 -2.39 -0.01 3.94 16 50 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 51 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 52 H 0.18 3.88 8.06 -2.91 -0.02 3.85 16 53 H 0.12 5.67 8.06 -2.92 -0.02 5.65 16 Total: -1.00 -65.35 427.17 2.64 -62.72 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.09 Total: 29.01 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.64 Total: 0.82 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -6.08 Total: -118.47 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.04 Total: -19.43 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.35 2.64 -62.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230655855.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.848 kcal (2) G-P(sol) polarization free energy of solvation -65.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds