Wall clock time and date at job start Wed Apr 1 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00182 * 2 1 4 4 N 1.46497 * 109.47056 * 125.00592 * 3 2 1 5 5 C 1.37667 * 127.16607 * 265.19498 * 4 3 2 6 6 C 1.47402 * 126.49077 * 0.02562 * 5 4 3 7 7 C 1.36956 * 127.16561 * 194.68217 * 6 5 4 8 8 N 1.33459 * 106.34833 * 179.84861 * 7 6 5 9 9 N 1.28526 * 109.36931 * 0.42972 * 8 7 6 10 10 N 1.28705 * 110.61960 * 359.72359 * 9 8 7 11 11 H 0.96997 * 126.00163 * 180.02562 * 10 9 8 12 12 N 1.31398 * 107.01819 * 179.97438 * 5 4 3 13 13 N 1.28510 * 109.92072 * 359.72490 * 12 5 4 14 14 C 1.31371 * 110.11781 * 0.45655 * 13 12 5 15 15 N 1.38405 * 126.35728 * 179.81354 * 14 13 12 16 16 C 1.46905 * 111.00299 * 301.94247 * 15 14 13 17 17 C 1.50694 * 109.47051 * 288.44101 * 16 15 14 18 18 H 1.07995 * 120.00374 * 355.86569 * 17 16 15 19 19 C 1.37875 * 119.99804 * 175.86575 * 17 16 15 20 20 N 1.31517 * 120.00050 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.47145 * 90.00144 * 21 19 17 23 23 H 1.48502 * 109.47083 * 210.00248 * 21 19 17 24 24 H 1.48497 * 109.47142 * 329.99639 * 21 19 17 25 25 C 1.46895 * 110.99942 * 65.89750 * 15 14 13 26 26 C 1.53002 * 109.47239 * 169.99654 * 25 15 14 27 27 C 1.53003 * 109.47143 * 180.02562 * 26 25 15 28 28 C 1.53005 * 109.47129 * 65.00398 * 27 26 25 29 29 C 1.52998 * 109.47057 * 185.00238 * 27 26 25 30 30 H 1.07999 * 120.00341 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99729 * 359.97438 * 1 2 3 32 32 H 1.08009 * 119.99702 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.46713 * 4.99983 * 3 2 1 34 34 H 1.09002 * 109.46841 * 245.00047 * 3 2 1 35 35 H 1.07995 * 126.82342 * 359.97438 * 7 6 5 36 36 H 1.09003 * 109.46600 * 48.43785 * 16 15 14 37 37 H 1.09000 * 109.47231 * 168.43997 * 16 15 14 38 38 H 0.96999 * 120.00076 * 180.02562 * 20 19 17 39 39 H 1.09005 * 109.47089 * 49.99997 * 25 15 14 40 40 H 1.08995 * 109.47541 * 289.99906 * 25 15 14 41 41 H 1.09005 * 109.46800 * 60.00167 * 26 25 15 42 42 H 1.08989 * 109.47305 * 300.00187 * 26 25 15 43 43 H 1.08997 * 109.47491 * 305.00339 * 27 26 25 44 44 H 1.08997 * 109.46654 * 180.02562 * 28 27 26 45 45 H 1.09003 * 109.46764 * 299.99790 * 28 27 26 46 46 H 1.08997 * 109.46982 * 59.99629 * 28 27 26 47 47 H 1.09003 * 109.47546 * 60.00049 * 29 27 26 48 48 H 1.09001 * 109.47193 * 180.02562 * 29 27 26 49 49 H 1.09004 * 109.47373 * 300.00236 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1313 5 6 2.7747 1.8784 2.3756 6 6 1.5476 2.5558 2.8317 7 6 1.4005 3.3406 3.9444 8 7 0.1273 3.7407 3.9563 9 7 -0.4852 3.2437 2.9415 10 7 0.3166 2.5266 2.2348 11 1 0.0883 2.0495 1.4217 12 7 3.8662 1.6811 3.0801 13 7 4.7362 1.0530 2.3729 14 6 4.2584 0.8192 1.1717 15 7 4.9134 0.1689 0.1404 16 6 6.1724 0.8477 -0.1948 17 6 5.8710 2.1518 -0.8871 18 1 4.8502 2.4159 -1.1207 19 6 6.8985 3.0078 -1.2224 20 7 6.6355 4.1462 -1.8262 21 14 8.6641 2.5514 -0.8178 22 1 9.2533 1.7979 -1.9536 23 1 9.4530 3.7871 -0.5811 24 1 8.6896 1.7065 0.4031 25 6 5.1488 -1.2424 0.4734 26 6 5.6425 -1.9844 -0.7703 27 6 5.8870 -3.4544 -0.4236 28 6 4.5590 -4.1195 -0.0562 29 6 6.4981 -4.1683 -1.6310 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3586 2.1315 0.0896 34 1 2.6213 1.4025 -0.9314 35 1 2.1636 3.5882 4.6673 36 1 6.7343 1.0427 0.7187 37 1 6.7625 0.2132 -0.8560 38 1 7.3584 4.7482 -2.0625 39 1 4.2193 -1.6937 0.8205 40 1 5.9010 -1.3097 1.2592 41 1 6.5721 -1.5331 -1.1174 42 1 4.8903 -1.9171 -1.5561 43 1 6.5720 -3.5193 0.4218 44 1 4.7333 -5.1666 0.1913 45 1 4.1237 -3.6108 0.8041 46 1 3.8740 -4.0546 -0.9015 47 1 7.4442 -3.6946 -1.8928 48 1 6.6719 -5.2157 -1.3841 49 1 5.8131 -4.1035 -2.4764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262962826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:15 Heat of formation + Delta-G solvation = 201.483629 kcal Electronic energy + Delta-G solvation = -31343.335516 eV Core-core repulsion = 27345.122702 eV Total energy + Delta-G solvation = -3998.212813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.45756 -42.54670 -38.02055 -36.48875 -35.75461 -33.54255 -32.99256 -32.71893 -32.13041 -29.59739 -28.87000 -27.33941 -27.22868 -26.65848 -23.85994 -23.39253 -22.93525 -22.33975 -21.38046 -20.80972 -19.96023 -19.59560 -18.51938 -17.22783 -17.08437 -16.50596 -16.03499 -15.79296 -15.56826 -15.32692 -14.85259 -14.52533 -14.35301 -14.26223 -13.91228 -13.78439 -13.67145 -12.76908 -12.72785 -12.54200 -12.37257 -12.23680 -12.10989 -11.90119 -11.80246 -11.52621 -11.34844 -11.30568 -10.98908 -10.89612 -10.79230 -10.69371 -10.56339 -10.46175 -10.32527 -10.21927 -10.06645 -10.02756 -9.88553 -9.56677 -8.72549 -8.38796 -8.13140 -6.22012 -4.22020 0.82832 1.53731 2.03721 2.25479 2.38894 2.56596 3.16485 3.20259 3.28891 3.31912 3.90271 4.06394 4.28051 4.29526 4.37680 4.49662 4.77377 4.85602 4.87077 4.90038 4.96748 5.04328 5.11421 5.28185 5.31040 5.39153 5.43946 5.52691 5.59523 5.64482 5.72550 5.75194 5.79141 5.88300 5.95686 5.99096 6.02828 6.04501 6.08473 6.18323 6.19504 6.32645 6.39696 6.47483 6.49699 6.70557 6.83015 7.21292 7.47791 7.74765 8.20555 8.36155 8.77846 8.88287 9.37778 10.90569 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.008159 B = 0.004449 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.858089 B = 6291.967087 C = 8459.733690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.132 3.868 4 N -0.458 5.458 5 C 0.212 3.788 6 C 0.075 3.925 7 C 0.008 3.992 8 N -0.261 5.261 9 N -0.065 5.065 10 N -0.394 5.394 11 H 0.442 0.558 12 N -0.240 5.240 13 N -0.309 5.309 14 C 0.422 3.578 15 N -0.463 5.463 16 C 0.166 3.834 17 C -0.519 4.519 18 H 0.073 0.927 19 C 0.076 3.924 20 N -0.894 5.894 21 Si 0.870 3.130 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.262 1.262 25 C 0.066 3.934 26 C -0.112 4.112 27 C -0.096 4.096 28 C -0.147 4.147 29 C -0.145 4.145 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.206 0.794 36 H 0.017 0.983 37 H 0.044 0.956 38 H 0.266 0.734 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 -13.415 2.272 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.151 5.151 5 C -0.053 4.053 6 C -0.059 4.059 7 C -0.151 4.151 8 N -0.127 5.127 9 N -0.046 5.046 10 N -0.121 5.121 11 H 0.291 0.709 12 N -0.084 5.084 13 N -0.154 5.154 14 C 0.067 3.933 15 N -0.189 5.189 16 C 0.041 3.959 17 C -0.557 4.557 18 H 0.091 0.909 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.697 3.303 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.186 1.186 25 C -0.061 4.061 26 C -0.150 4.150 27 C -0.115 4.115 28 C -0.205 4.205 29 C -0.203 4.203 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.223 0.777 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.276 -12.593 3.156 16.557 hybrid contribution 1.528 -0.718 -1.283 2.121 sum -8.748 -13.311 1.873 16.038 Atomic orbital electron populations 1.23934 0.95372 1.02541 1.00208 1.23280 0.96021 0.98814 0.99938 1.21043 0.91830 0.95617 0.90574 1.46325 1.13838 1.43625 1.11304 1.20870 0.95604 1.05055 0.83820 1.18998 0.84242 1.04984 0.97670 1.23768 0.95335 0.98067 0.97942 1.74965 1.05469 1.19189 1.13108 1.78195 1.17723 1.07099 1.01557 1.45733 1.06830 1.36428 1.23083 0.70888 1.74358 0.96614 1.12697 1.24766 1.74717 1.21938 1.16758 1.02012 1.22259 0.83132 0.96269 0.91643 1.58860 1.27088 1.01613 1.31351 1.20482 0.83818 0.95037 0.96543 1.20822 0.95720 1.00728 1.38448 0.90858 1.24816 0.98983 0.94548 0.94348 1.69867 1.32831 1.09994 1.40488 0.86914 0.85089 0.78696 0.79611 1.19899 1.20893 1.18613 1.22174 1.00431 0.85937 0.97570 1.21705 1.02557 0.93270 0.97435 1.21096 0.97174 0.94814 0.98444 1.21890 0.97247 0.99967 1.01368 1.21815 1.00884 0.99730 0.97847 0.86739 0.88830 0.85518 0.90186 0.85051 0.77747 0.96539 0.93833 0.92395 0.91569 0.93528 0.90789 0.90913 0.91268 0.93080 0.92732 0.92698 0.92548 0.93014 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 13.48 29.01 0.39 -0.97 16 2 C -0.16 -1.60 9.81 -36.03 -0.35 -1.95 16 3 C 0.13 1.70 6.05 -5.20 -0.03 1.67 16 4 N -0.46 -7.59 2.82 -116.06 -0.33 -7.92 16 5 C 0.21 3.59 7.93 -153.76 -1.22 2.38 16 6 C 0.08 1.09 7.03 -82.37 -0.58 0.52 16 7 C 0.01 0.12 12.06 -17.31 -0.21 -0.09 16 8 N -0.26 -3.84 12.36 30.49 0.38 -3.47 16 9 N -0.07 -0.91 13.35 60.35 0.81 -0.10 16 10 N -0.39 -4.90 6.59 33.31 0.22 -4.68 16 11 H 0.44 4.37 4.43 -190.34 -0.84 3.53 16 12 N -0.24 -4.69 12.23 32.53 0.40 -4.29 16 13 N -0.31 -6.49 11.88 30.31 0.36 -6.13 16 14 C 0.42 8.12 5.89 -318.87 -1.88 6.24 16 15 N -0.46 -8.58 4.48 -175.88 -0.79 -9.37 16 16 C 0.17 3.69 3.66 -4.98 -0.02 3.67 16 17 C -0.52 -13.75 9.37 -34.44 -0.32 -14.07 16 18 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 19 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 21 Si 0.87 20.71 27.55 -169.99 -4.68 16.02 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.26 -6.09 6.42 56.52 0.36 -5.73 16 25 C 0.07 0.99 4.65 -3.83 -0.02 0.97 16 26 C -0.11 -1.45 4.65 -26.73 -0.12 -1.58 16 27 C -0.10 -1.01 2.92 -90.62 -0.26 -1.27 16 28 C -0.15 -1.37 8.95 37.16 0.33 -1.03 16 29 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 30 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.09 0.57 6.56 -52.49 -0.34 0.22 16 32 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 33 H 0.08 0.88 5.76 -51.93 -0.30 0.58 16 34 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 35 H 0.21 2.42 8.06 -52.49 -0.42 1.99 16 36 H 0.02 0.41 6.53 -51.93 -0.34 0.07 16 37 H 0.04 0.93 5.58 -51.93 -0.29 0.64 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.89 6.48 -51.93 -0.34 0.56 16 40 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 41 H 0.07 1.07 6.29 -51.93 -0.33 0.74 16 42 H 0.07 0.94 8.14 -51.94 -0.42 0.51 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -32.01 398.96 -8.69 -40.70 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.79 Total: 3.33 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.05 Total: -4.55 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 1.82 Total: -61.52 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.68 Total: 16.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.01 -8.69 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262962826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.186 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds