Wall clock time and date at job start Wed Apr 1 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00182 * 2 1 4 4 N 1.46497 * 109.47056 * 125.00592 * 3 2 1 5 5 C 1.37667 * 127.16607 * 265.19498 * 4 3 2 6 6 C 1.47402 * 126.49077 * 0.02562 * 5 4 3 7 7 C 1.36956 * 127.16561 * 194.68217 * 6 5 4 8 8 N 1.33459 * 106.34833 * 179.84861 * 7 6 5 9 9 N 1.28526 * 109.36931 * 0.42972 * 8 7 6 10 10 N 1.28705 * 110.61960 * 359.72359 * 9 8 7 11 11 H 0.96997 * 126.00163 * 180.02562 * 10 9 8 12 12 N 1.31398 * 107.01819 * 179.97438 * 5 4 3 13 13 N 1.28510 * 109.92072 * 359.72490 * 12 5 4 14 14 C 1.31371 * 110.11781 * 0.45655 * 13 12 5 15 15 N 1.38405 * 126.35728 * 179.81354 * 14 13 12 16 16 C 1.46905 * 111.00299 * 301.94247 * 15 14 13 17 17 C 1.50694 * 109.47051 * 288.44101 * 16 15 14 18 18 H 1.07995 * 120.00374 * 355.86569 * 17 16 15 19 19 C 1.37875 * 119.99804 * 175.86575 * 17 16 15 20 20 N 1.31517 * 120.00050 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.47145 * 90.00144 * 21 19 17 23 23 H 1.48502 * 109.47083 * 210.00248 * 21 19 17 24 24 H 1.48497 * 109.47142 * 329.99639 * 21 19 17 25 25 C 1.46895 * 110.99942 * 65.89750 * 15 14 13 26 26 C 1.53002 * 109.47239 * 169.99654 * 25 15 14 27 27 C 1.53003 * 109.47143 * 180.02562 * 26 25 15 28 28 C 1.53005 * 109.47129 * 65.00398 * 27 26 25 29 29 C 1.52998 * 109.47057 * 185.00238 * 27 26 25 30 30 H 1.07999 * 120.00341 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99729 * 359.97438 * 1 2 3 32 32 H 1.08009 * 119.99702 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.46713 * 4.99983 * 3 2 1 34 34 H 1.09002 * 109.46841 * 245.00047 * 3 2 1 35 35 H 1.07995 * 126.82342 * 359.97438 * 7 6 5 36 36 H 1.09003 * 109.46600 * 48.43785 * 16 15 14 37 37 H 1.09000 * 109.47231 * 168.43997 * 16 15 14 38 38 H 0.96999 * 120.00076 * 180.02562 * 20 19 17 39 39 H 1.09005 * 109.47089 * 49.99997 * 25 15 14 40 40 H 1.08995 * 109.47541 * 289.99906 * 25 15 14 41 41 H 1.09005 * 109.46800 * 60.00167 * 26 25 15 42 42 H 1.08989 * 109.47305 * 300.00187 * 26 25 15 43 43 H 1.08997 * 109.47491 * 305.00339 * 27 26 25 44 44 H 1.08997 * 109.46654 * 180.02562 * 28 27 26 45 45 H 1.09003 * 109.46764 * 299.99790 * 28 27 26 46 46 H 1.08997 * 109.46982 * 59.99629 * 28 27 26 47 47 H 1.09003 * 109.47546 * 60.00049 * 29 27 26 48 48 H 1.09001 * 109.47193 * 180.02562 * 29 27 26 49 49 H 1.09004 * 109.47373 * 300.00236 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1313 5 6 2.7747 1.8784 2.3756 6 6 1.5476 2.5558 2.8317 7 6 1.4005 3.3406 3.9444 8 7 0.1273 3.7407 3.9563 9 7 -0.4852 3.2437 2.9415 10 7 0.3166 2.5266 2.2348 11 1 0.0883 2.0495 1.4217 12 7 3.8662 1.6811 3.0801 13 7 4.7362 1.0530 2.3729 14 6 4.2584 0.8192 1.1717 15 7 4.9134 0.1689 0.1404 16 6 6.1724 0.8477 -0.1948 17 6 5.8710 2.1518 -0.8871 18 1 4.8502 2.4159 -1.1207 19 6 6.8985 3.0078 -1.2224 20 7 6.6355 4.1462 -1.8262 21 14 8.6641 2.5514 -0.8178 22 1 9.2533 1.7979 -1.9536 23 1 9.4530 3.7871 -0.5811 24 1 8.6896 1.7065 0.4031 25 6 5.1488 -1.2424 0.4734 26 6 5.6425 -1.9844 -0.7703 27 6 5.8870 -3.4544 -0.4236 28 6 4.5590 -4.1195 -0.0562 29 6 6.4981 -4.1683 -1.6310 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3586 2.1315 0.0896 34 1 2.6213 1.4025 -0.9314 35 1 2.1636 3.5882 4.6673 36 1 6.7343 1.0427 0.7187 37 1 6.7625 0.2132 -0.8560 38 1 7.3584 4.7482 -2.0625 39 1 4.2193 -1.6937 0.8205 40 1 5.9010 -1.3097 1.2592 41 1 6.5721 -1.5331 -1.1174 42 1 4.8903 -1.9171 -1.5561 43 1 6.5720 -3.5193 0.4218 44 1 4.7333 -5.1666 0.1913 45 1 4.1237 -3.6108 0.8041 46 1 3.8740 -4.0546 -0.9015 47 1 7.4442 -3.6946 -1.8928 48 1 6.6719 -5.2157 -1.3841 49 1 5.8131 -4.1035 -2.4764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262962826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:14 Heat of formation + Delta-G solvation = 182.657017 kcal Electronic energy + Delta-G solvation = -31344.151899 eV Core-core repulsion = 27345.122702 eV Total energy + Delta-G solvation = -3999.029197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.63250 -43.90259 -39.33550 -37.55112 -36.84992 -34.78678 -34.61469 -34.07526 -33.35014 -30.84861 -30.52334 -28.63361 -27.98420 -27.84970 -25.09281 -24.73167 -24.42614 -23.64892 -22.61341 -21.81085 -20.97435 -20.75507 -19.67330 -19.11091 -18.43131 -17.76062 -17.34874 -17.09263 -16.86125 -16.43948 -16.02823 -15.85144 -15.68708 -15.37504 -15.13444 -14.83753 -14.60086 -14.52215 -14.07791 -13.75827 -13.67008 -13.26006 -13.05296 -12.96587 -12.86603 -12.78697 -12.69915 -12.48613 -12.45225 -12.23020 -12.01559 -11.98315 -11.85564 -11.69369 -11.61937 -11.49298 -11.46770 -11.35429 -11.12686 -10.81902 -10.77175 -9.81083 -9.61595 -8.35527 -6.38908 -0.38037 0.62520 0.77002 1.18064 1.22941 1.29836 1.34949 1.38615 1.43463 1.77938 2.29017 2.63929 2.82388 3.00085 3.21187 3.36061 3.54385 3.70453 3.79909 3.89072 3.96366 4.04822 4.07519 4.12665 4.24698 4.28700 4.42490 4.52684 4.55423 4.68126 4.69076 4.82991 4.84682 4.86406 4.90760 4.94886 5.00946 5.05666 5.11545 5.16380 5.25867 5.34186 5.34363 5.42310 5.44661 5.47702 5.52086 5.55379 5.70260 6.23731 6.31928 6.63146 7.06691 7.24214 7.44571 8.80141 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.008159 B = 0.004449 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.858089 B = 6291.967087 C = 8459.733690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.186 4.186 3 C 0.128 3.872 4 N -0.455 5.455 5 C 0.226 3.774 6 C 0.059 3.941 7 C 0.017 3.983 8 N -0.277 5.277 9 N -0.059 5.059 10 N -0.373 5.373 11 H 0.453 0.547 12 N -0.269 5.269 13 N -0.342 5.342 14 C 0.405 3.595 15 N -0.459 5.459 16 C 0.178 3.822 17 C -0.515 4.515 18 H 0.040 0.960 19 C 0.019 3.981 20 N -0.941 5.941 21 Si 0.931 3.069 22 H -0.253 1.253 23 H -0.286 1.286 24 H -0.255 1.255 25 C 0.069 3.931 26 C -0.105 4.105 27 C -0.092 4.092 28 C -0.144 4.144 29 C -0.144 4.144 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.222 0.778 36 H -0.002 1.002 37 H 0.059 0.941 38 H 0.267 0.733 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.066 0.934 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.875 -15.423 2.345 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.205 4.205 3 C 0.007 3.993 4 N -0.147 5.147 5 C -0.040 4.040 6 C -0.075 4.075 7 C -0.142 4.142 8 N -0.142 5.142 9 N -0.040 5.040 10 N -0.103 5.103 11 H 0.304 0.696 12 N -0.113 5.113 13 N -0.187 5.187 14 C 0.048 3.952 15 N -0.185 5.185 16 C 0.052 3.948 17 C -0.553 4.553 18 H 0.058 0.942 19 C -0.179 4.179 20 N -0.581 5.581 21 Si 0.754 3.246 22 H -0.177 1.177 23 H -0.212 1.212 24 H -0.179 1.179 25 C -0.057 4.057 26 C -0.143 4.143 27 C -0.111 4.111 28 C -0.201 4.201 29 C -0.201 4.201 30 H 0.156 0.844 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.238 0.762 36 H 0.015 0.985 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.574 -14.639 3.212 18.936 hybrid contribution 1.682 -0.056 -1.300 2.126 sum -9.892 -14.695 1.912 17.817 Atomic orbital electron populations 1.24276 0.94347 1.04460 0.95780 1.23016 0.96709 0.96896 1.03869 1.21252 0.91444 0.98301 0.88323 1.46531 1.13626 1.42566 1.11977 1.21154 0.95650 1.03592 0.83635 1.18848 0.84172 1.06030 0.98493 1.24120 0.95427 0.96963 0.97736 1.74999 1.05724 1.19900 1.13610 1.78162 1.17673 1.06715 1.01426 1.45681 1.05882 1.35674 1.23038 0.69571 1.74254 0.97461 1.14059 1.25490 1.74599 1.23217 1.17867 1.03018 1.22348 0.84196 0.97148 0.91478 1.58813 1.25176 1.02855 1.31659 1.20178 0.85522 0.93769 0.95324 1.21050 0.94157 1.02372 1.37707 0.94197 1.25651 1.03400 0.94472 0.94403 1.70007 1.34124 1.11425 1.42525 0.85951 0.79924 0.78493 0.80211 1.17745 1.21196 1.17905 1.22296 1.01103 0.84020 0.98330 1.21671 1.01541 0.94716 0.96388 1.21068 0.98076 0.93082 0.98905 1.21858 0.96406 1.00529 1.01340 1.21801 1.00539 1.00382 0.97379 0.84386 0.87159 0.85916 0.88535 0.87452 0.76157 0.98453 0.92280 0.92414 0.89868 0.94543 0.92421 0.90763 0.91455 0.91734 0.93233 0.92176 0.93137 0.91525 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 13.48 67.78 0.91 -0.85 16 2 C -0.19 -3.40 9.81 25.64 0.25 -3.15 16 3 C 0.13 3.29 6.05 85.63 0.52 3.81 16 4 N -0.45 -15.26 2.82 -521.10 -1.47 -16.73 16 5 C 0.23 7.69 7.93 136.01 1.08 8.77 16 6 C 0.06 1.65 7.03 40.48 0.28 1.94 16 7 C 0.02 0.46 12.06 84.14 1.01 1.48 16 8 N -0.28 -7.69 12.36 -57.46 -0.71 -8.40 16 9 N -0.06 -1.52 13.35 37.02 0.49 -1.02 16 10 N -0.37 -8.55 6.59 -48.54 -0.32 -8.87 16 11 H 0.45 7.84 4.43 -219.91 -0.97 6.87 16 12 N -0.27 -10.69 12.23 -51.01 -0.62 -11.31 16 13 N -0.34 -14.74 11.88 -58.00 -0.69 -15.43 16 14 C 0.40 15.95 5.89 260.11 1.53 17.48 16 15 N -0.46 -17.36 4.48 -710.36 -3.18 -20.54 16 16 C 0.18 8.07 3.66 85.55 0.31 8.38 16 17 C -0.51 -28.13 9.37 25.60 0.24 -27.89 16 18 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 19 C 0.02 1.09 5.47 84.65 0.46 1.56 16 20 N -0.94 -57.12 13.96 21.45 0.30 -56.83 16 21 Si 0.93 43.14 27.55 68.60 1.89 45.03 16 22 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.26 -11.46 6.42 99.48 0.64 -10.82 16 25 C 0.07 2.05 4.65 86.30 0.40 2.45 16 26 C -0.11 -2.66 4.65 30.60 0.14 -2.51 16 27 C -0.09 -1.79 2.92 -10.79 -0.03 -1.82 16 28 C -0.14 -2.36 8.95 71.98 0.64 -1.72 16 29 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 30 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.11 0.92 6.56 -2.91 -0.02 0.90 16 32 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.10 2.05 5.76 -2.39 -0.01 2.04 16 34 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.22 4.98 8.06 -2.91 -0.02 4.95 16 36 H 0.00 -0.12 6.53 -2.39 -0.02 -0.14 16 37 H 0.06 2.51 5.58 -2.39 -0.01 2.50 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.08 2.19 6.48 -2.38 -0.02 2.18 16 40 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 41 H 0.06 1.64 6.29 -2.38 -0.01 1.62 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 0.86 6.56 -2.39 -0.02 0.84 16 46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -71.52 398.96 4.05 -67.47 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.07 Total: 20.53 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 8.43 Total: 6.12 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -6.20 Total: -139.14 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.89 Total: 45.03 kcal Total: -71.52 4.05 -67.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262962826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.125 kcal (2) G-P(sol) polarization free energy of solvation -71.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds