Wall clock time and date at job start Wed Apr 1 2020 03:13:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.46500 * 119.99630 * 2 1
4 4 C 1.52996 * 109.47018 * 269.99581 * 3 2 1
5 5 C 1.53005 * 109.47157 * 180.02562 * 4 3 2
6 6 C 1.52996 * 109.47157 * 180.02562 * 5 4 3
7 7 C 1.53005 * 109.47157 * 180.02562 * 6 5 4
8 8 C 1.52996 * 109.47157 * 179.97438 * 7 6 5
9 9 N 1.46500 * 109.47018 * 179.97438 * 8 7 6
10 10 C 1.36936 * 119.99815 * 180.02562 * 9 8 7
11 11 H 1.08004 * 120.00447 * 359.97438 * 10 9 8
12 12 C 1.38812 * 119.99881 * 180.02562 * 10 9 8
13 13 N 1.31619 * 120.00029 * 179.97438 * 12 10 9
14 14 Si 1.86799 * 120.00224 * 0.02562 * 12 10 9
15 15 H 1.48507 * 109.47170 * 89.99705 * 14 12 10
16 16 H 1.48494 * 109.47446 * 209.99957 * 14 12 10
17 17 H 1.48503 * 109.46919 * 330.00331 * 14 12 10
18 18 C 1.34773 * 120.00032 * 179.97438 * 2 1 3
19 19 O 1.21577 * 119.99784 * 184.81031 * 18 2 1
20 20 C 1.47685 * 120.00008 * 4.80734 * 18 2 1
21 21 C 1.40192 * 120.40696 * 141.54696 * 20 18 2
22 22 N 1.31183 * 121.37321 * 180.25514 * 21 20 18
23 23 C 1.32938 * 121.84322 * 359.43435 * 22 21 20
24 24 N 1.36628 * 133.26381 * 180.20269 * 23 22 21
25 25 H 0.96996 * 125.34697 * 0.34234 * 24 23 22
26 26 N 1.39801 * 109.31399 * 180.32192 * 24 23 22
27 27 C 1.30195 * 110.13409 * 359.97438 * 26 24 23
28 28 C 1.41062 * 120.20416 * 0.55832 * 23 22 21
29 29 C 1.39505 * 120.41227 * 321.52317 * 20 18 2
30 30 H 1.09001 * 109.47233 * 264.92463 * 1 2 3
31 31 H 1.08995 * 109.47235 * 24.92574 * 1 2 3
32 32 H 1.08999 * 109.46829 * 144.92377 * 1 2 3
33 33 H 1.08995 * 109.47612 * 29.99979 * 3 2 1
34 34 H 1.09009 * 109.46959 * 149.99717 * 3 2 1
35 35 H 1.08996 * 109.47337 * 300.00068 * 4 3 2
36 36 H 1.09002 * 109.47379 * 60.00522 * 4 3 2
37 37 H 1.08996 * 109.46869 * 300.00130 * 5 4 3
38 38 H 1.09002 * 109.46733 * 59.99902 * 5 4 3
39 39 H 1.08996 * 109.47337 * 299.99844 * 6 5 4
40 40 H 1.09002 * 109.47379 * 60.00298 * 6 5 4
41 41 H 1.08996 * 109.46869 * 300.00130 * 7 6 5
42 42 H 1.09002 * 109.46733 * 59.99902 * 7 6 5
43 43 H 1.08995 * 109.47254 * 300.00393 * 8 7 6
44 44 H 1.09009 * 109.47145 * 60.00025 * 8 7 6
45 45 H 0.96994 * 120.00006 * 0.02562 * 9 8 7
46 46 H 0.97002 * 119.99934 * 179.97438 * 13 12 10
47 47 H 1.08003 * 119.31221 * 359.97418 * 21 20 18
48 48 H 1.08002 * 126.20837 * 179.97438 * 27 26 24
49 49 H 1.07998 * 121.02436 * 0.02562 * 29 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4525 1.7104 -1.4425
5 6 3.2180 3.0352 -1.4425
6 6 3.4725 3.4771 -2.8850
7 6 4.2386 4.8016 -2.8850
8 6 4.4936 5.2432 -4.3275
9 7 5.2265 6.5116 -4.3275
10 6 5.5685 7.1047 -5.5134
11 1 5.2983 6.6372 -6.4488
12 6 6.2635 8.3064 -5.5134
13 7 6.5927 8.8762 -6.6533
14 14 6.7328 9.1140 -3.8958
15 1 8.0692 8.6270 -3.4687
16 1 6.7763 10.5877 -4.0725
17 1 5.7261 8.7690 -2.8599
18 6 2.1389 -1.1672 0.0005
19 8 3.3515 -1.1689 0.0888
20 6 1.4044 -2.4440 -0.1061
21 6 1.9246 -3.5005 -0.8667
22 7 1.2859 -4.6408 -0.9784
23 6 0.1236 -4.8562 -0.3701
24 7 -0.7234 -5.9271 -0.3213
25 1 -0.5808 -6.7762 -0.7680
26 7 -1.8279 -5.6072 0.4738
27 6 -1.7172 -4.3916 0.9265
28 6 -0.4658 -3.8422 0.4136
29 6 0.1846 -2.6138 0.5492
30 1 -0.3634 -0.0909 1.0236
31 1 -0.3633 0.9319 -0.4331
32 1 -0.3633 -0.8410 -0.5906
33 1 1.6084 2.0284 0.5138
34 1 3.1499 1.1385 0.5139
35 1 3.0416 0.9508 -1.9563
36 1 1.5001 1.8407 -1.9564
37 1 2.6292 3.7949 -0.9286
38 1 4.1704 2.9044 -0.9287
39 1 4.0611 2.7174 -3.3993
40 1 2.5199 3.6080 -3.3984
41 1 3.6504 5.5614 -2.3706
42 1 5.1912 4.6703 -2.3718
43 1 5.0819 4.4831 -4.8415
44 1 3.5411 5.3743 -4.8412
45 1 5.4696 6.9313 -3.4875
46 1 7.0780 9.7161 -6.6533
47 1 2.8688 -3.3713 -1.3749
48 1 -2.4235 -3.8816 1.5649
49 1 -0.2436 -1.8198 1.1430
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001264043121.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:13:17
Heat of formation + Delta-G solvation = 46.645157 kcal
Electronic energy + Delta-G solvation = -28100.203867 eV
Core-core repulsion = 24062.984003 eV
Total energy + Delta-G solvation = -4037.219865 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.74258 -41.08128 -38.89904 -37.92562 -37.06446 -35.88903 -34.54581 -33.71732
-32.29538 -31.65859 -31.20622 -28.85271 -27.67321 -26.00736 -25.15647 -24.55860
-23.51114 -22.85004 -22.25043 -21.86139 -20.65858 -19.60758 -19.57770 -18.49304
-17.86272 -17.11413 -16.90185 -16.70197 -16.60818 -16.48040 -16.17469 -15.81847
-15.49225 -15.19546 -14.93411 -14.86353 -14.68614 -14.31512 -14.12788 -13.88673
-13.80463 -13.70184 -13.51932 -13.29201 -12.98741 -12.87612 -12.56470 -12.41071
-12.33918 -12.09050 -11.88167 -11.84150 -11.80091 -11.66682 -11.56702 -11.31421
-11.20497 -10.97624 -10.59515 -10.25141 -9.74112 -9.55912 -9.31508 -8.04422
-5.38639 -0.36945 -0.26308 1.28087 1.37545 1.37811 1.42140 1.49685
1.61335 1.97575 2.48153 2.59252 3.13132 3.24000 3.26760 3.43797
3.53551 3.59124 3.68839 3.98418 3.99304 4.07867 4.21358 4.24751
4.30578 4.34640 4.37613 4.47642 4.57845 4.65418 4.69098 4.77237
4.79717 4.91139 4.92715 4.95496 5.02013 5.05818 5.09049 5.18458
5.28077 5.33929 5.36796 5.52549 5.53987 5.60230 5.73476 5.96079
6.19968 6.21281 6.31536 6.74804 7.06534 7.06820 7.82859 8.03285
9.17233
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.029343 B = 0.001347 C = 0.001331
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 953.997794 B =20786.308825 C =21026.143455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.058 3.942
2 N -0.606 5.606
3 C 0.114 3.886
4 C -0.126 4.126
5 C -0.109 4.109
6 C -0.108 4.108
7 C -0.118 4.118
8 C 0.149 3.851
9 N -0.762 5.762
10 C -0.244 4.244
11 H 0.052 0.948
12 C -0.065 4.065
13 N -0.985 5.985
14 Si 0.961 3.039
15 H -0.278 1.278
16 H -0.292 1.292
17 H -0.249 1.249
18 C 0.567 3.433
19 O -0.576 6.576
20 C -0.237 4.237
21 C 0.215 3.785
22 N -0.530 5.530
23 C 0.309 3.691
24 N -0.495 5.495
25 H 0.451 0.549
26 N -0.260 5.260
27 C 0.117 3.883
28 C -0.243 4.243
29 C 0.060 3.940
30 H 0.091 0.909
31 H 0.093 0.907
32 H 0.078 0.922
33 H 0.110 0.890
34 H 0.067 0.933
35 H 0.042 0.958
36 H 0.075 0.925
37 H 0.080 0.920
38 H 0.058 0.942
39 H 0.054 0.946
40 H 0.068 0.932
41 H 0.069 0.931
42 H 0.061 0.939
43 H 0.017 0.983
44 H 0.022 0.978
45 H 0.367 0.633
46 H 0.259 0.741
47 H 0.172 0.828
48 H 0.252 0.748
49 H 0.192 0.808
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.962 -29.011 24.243 44.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 N -0.336 5.336
3 C -0.008 4.008
4 C -0.164 4.164
5 C -0.147 4.147
6 C -0.146 4.146
7 C -0.156 4.156
8 C 0.023 3.977
9 N -0.407 5.407
10 C -0.375 4.375
11 H 0.071 0.929
12 C -0.257 4.257
13 N -0.635 5.635
14 Si 0.787 3.213
15 H -0.204 1.204
16 H -0.219 1.219
17 H -0.173 1.173
18 C 0.356 3.644
19 O -0.456 6.456
20 C -0.245 4.245
21 C 0.045 3.955
22 N -0.245 5.245
23 C 0.068 3.932
24 N -0.213 5.213
25 H 0.297 0.703
26 N -0.072 5.072
27 C -0.082 4.082
28 C -0.253 4.253
29 C 0.032 3.968
30 H 0.110 0.890
31 H 0.112 0.888
32 H 0.096 0.904
33 H 0.128 0.872
34 H 0.086 0.914
35 H 0.061 0.939
36 H 0.094 0.906
37 H 0.098 0.902
38 H 0.077 0.923
39 H 0.072 0.928
40 H 0.086 0.914
41 H 0.087 0.913
42 H 0.080 0.920
43 H 0.035 0.965
44 H 0.040 0.960
45 H 0.200 0.800
46 H 0.068 0.932
47 H 0.189 0.811
48 H 0.268 0.732
49 H 0.209 0.791
Dipole moment (debyes) X Y Z Total
from point charges -23.824 -30.827 23.550 45.525
hybrid contribution 1.249 1.366 0.042 1.851
sum -22.575 -29.461 23.593 43.980
Atomic orbital electron populations
1.22506 0.77067 1.05076 1.03667 1.47857 1.08619 1.05175 1.71990
1.21616 0.97873 0.84248 0.97026 1.21855 1.00844 0.96751 0.96992
1.21444 1.00579 0.96701 0.95983 1.21437 1.00113 0.95321 0.97759
1.21682 1.00810 0.98166 0.94914 1.20863 0.93893 0.85937 0.96971
1.42770 1.69093 1.25015 1.03872 1.19088 1.28862 1.03069 0.86444
0.92945 1.25593 1.00973 0.98456 1.00639 1.69900 1.46384 1.20345
1.26857 0.85321 0.78848 0.77238 0.79856 1.20362 1.21870 1.17325
1.18159 0.86365 0.83981 0.75900 1.90810 1.15503 1.87739 1.51598
1.20506 0.99096 0.96534 1.08325 1.22877 0.96773 0.84894 0.90921
1.66777 1.07924 1.24562 1.25219 1.19590 0.90351 0.89709 0.93596
1.45985 1.15619 1.14266 1.45419 0.70270 1.76770 1.04907 1.17548
1.07986 1.25947 0.94735 0.90219 0.97254 1.20713 1.00204 0.96715
1.07712 1.21893 0.89065 0.95007 0.90789 0.89033 0.88804 0.90396
0.87218 0.91435 0.93893 0.90606 0.90186 0.92280 0.92755 0.91355
0.91259 0.92040 0.96514 0.95986 0.79976 0.93227 0.81119 0.73194
0.79130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.12 8.87 127.77 1.13 1.25 16
2 N -0.61 -6.71 2.87 -850.37 -2.44 -9.15 16
3 C 0.11 1.40 5.42 86.38 0.47 1.87 16
4 C -0.13 -1.87 5.54 30.59 0.17 -1.70 16
5 C -0.11 -1.83 5.21 30.59 0.16 -1.67 16
6 C -0.11 -2.40 5.21 30.59 0.16 -2.24 16
7 C -0.12 -3.37 5.33 30.59 0.16 -3.21 16
8 C 0.15 5.89 6.26 86.38 0.54 6.43 16
9 N -0.76 -37.27 5.41 -343.45 -1.86 -39.12 16
10 C -0.24 -14.55 10.47 84.03 0.88 -13.67 16
11 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16
12 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16
13 N -0.98 -64.51 13.97 21.65 0.30 -64.21 16
14 Si 0.96 46.14 27.74 68.60 1.90 48.05 16
15 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16
16 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16
17 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16
18 C 0.57 9.79 7.37 86.74 0.64 10.43 16
19 O -0.58 -15.25 16.46 -3.96 -0.07 -15.31 16
20 C -0.24 -3.25 5.27 -20.00 -0.11 -3.35 16
21 C 0.21 3.64 10.77 85.26 0.92 4.55 16
22 N -0.53 -9.64 10.37 -191.96 -1.99 -11.63 16
23 C 0.31 4.68 8.47 134.17 1.14 5.82 16
24 N -0.50 -6.16 7.33 -55.36 -0.41 -6.56 16
25 H 0.45 4.02 8.96 -213.52 -1.91 2.11 16
26 N -0.26 -2.79 12.54 -53.08 -0.67 -3.46 16
27 C 0.12 0.59 12.30 86.94 1.07 1.66 16
28 C -0.24 -2.31 6.36 -20.24 -0.13 -2.44 16
29 C 0.06 0.43 7.73 22.92 0.18 0.60 16
30 H 0.09 -0.31 6.86 -2.39 -0.02 -0.33 16
31 H 0.09 0.01 8.03 -2.39 -0.02 -0.01 16
32 H 0.08 0.15 5.84 -2.39 -0.01 0.14 16
33 H 0.11 0.71 8.07 -2.39 -0.02 0.69 16
34 H 0.07 1.15 7.36 -2.38 -0.02 1.13 16
35 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16
36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
44 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16
45 H 0.37 16.82 5.53 -92.71 -0.51 16.31 16
46 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16
47 H 0.17 2.81 8.04 -2.91 -0.02 2.79 16
48 H 0.25 -1.39 8.06 -2.91 -0.02 -1.42 16
49 H 0.19 -0.20 5.30 -2.91 -0.02 -0.22 16
Total: -1.00 -85.71 403.36 1.12 -84.59
By element:
Atomic # 1 Polarization: 17.45 SS G_CDS: -1.50 Total: 15.95 kcal
Atomic # 6 Polarization: -6.98 SS G_CDS: 7.85 Total: 0.87 kcal
Atomic # 7 Polarization: -127.08 SS G_CDS: -7.06 Total: -134.14 kcal
Atomic # 8 Polarization: -15.25 SS G_CDS: -0.07 Total: -15.31 kcal
Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.05 kcal
Total: -85.71 1.12 -84.59 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001264043121.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.235 kcal
(2) G-P(sol) polarization free energy of solvation -85.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.522 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.645 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds