Wall clock time and date at job start Wed Apr 1 2020 03:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00070 * 2 1 4 4 C 1.53006 * 109.46632 * 270.00196 * 3 2 1 5 5 C 1.53003 * 109.46565 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47118 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47565 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47565 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47185 * 179.97438 * 8 7 6 10 10 C 1.36941 * 119.99526 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00458 * 0.02562 * 10 9 8 12 12 C 1.38816 * 119.99389 * 179.97438 * 10 9 8 13 13 N 1.31616 * 120.00092 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99628 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47520 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46900 * 120.00397 * 14 12 10 17 17 H 1.48495 * 109.47658 * 240.00145 * 14 12 10 18 18 C 1.34778 * 119.99751 * 180.02562 * 2 1 3 19 19 O 1.21592 * 119.99637 * 183.04294 * 18 2 1 20 20 C 1.47499 * 120.00129 * 3.04240 * 18 2 1 21 21 C 1.36893 * 120.60946 * 333.94443 * 20 18 2 22 22 C 1.40132 * 119.25552 * 179.97438 * 21 20 18 23 23 N 1.31143 * 120.46308 * 0.02562 * 22 21 20 24 24 C 1.33699 * 121.18847 * 359.97438 * 23 22 21 25 25 C 1.39069 * 132.55816 * 180.02562 * 24 23 22 26 26 C 1.38498 * 107.66670 * 179.97438 * 25 24 23 27 27 N 1.31526 * 109.04176 * 359.97438 * 26 25 24 28 28 N 1.37294 * 120.63667 * 0.02562 * 24 23 22 29 29 H 1.08999 * 109.47257 * 267.96194 * 1 2 3 30 30 H 1.09001 * 109.47209 * 27.95616 * 1 2 3 31 31 H 1.08997 * 109.47380 * 147.95880 * 1 2 3 32 32 H 1.09003 * 109.47034 * 29.99840 * 3 2 1 33 33 H 1.08996 * 109.47396 * 150.00413 * 3 2 1 34 34 H 1.09003 * 109.47121 * 299.99591 * 4 3 2 35 35 H 1.08996 * 109.47099 * 60.00562 * 4 3 2 36 36 H 1.08997 * 109.47517 * 299.99917 * 5 4 3 37 37 H 1.09001 * 109.47154 * 59.99844 * 5 4 3 38 38 H 1.08997 * 109.47027 * 300.00423 * 6 5 4 39 39 H 1.09001 * 109.47068 * 59.99997 * 6 5 4 40 40 H 1.08997 * 109.47176 * 300.00188 * 7 6 5 41 41 H 1.09001 * 109.47047 * 59.99841 * 7 6 5 42 42 H 1.08997 * 109.47027 * 300.00279 * 8 7 6 43 43 H 1.09001 * 109.47068 * 59.99853 * 8 7 6 44 44 H 0.96995 * 119.99834 * 359.97438 * 9 8 7 45 45 H 0.97002 * 119.99987 * 180.02562 * 13 12 10 46 46 H 1.07997 * 120.37101 * 0.02562 * 21 20 18 47 47 H 1.07996 * 119.76751 * 180.02562 * 22 21 20 48 48 H 1.07997 * 126.16829 * 359.97438 * 25 24 23 49 49 H 1.08004 * 125.48143 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7103 -1.4426 5 6 3.2169 3.0357 -1.4426 6 6 3.4724 3.4771 -2.8851 7 6 4.2374 4.8020 -2.8852 8 6 4.4935 5.2431 -4.3276 9 7 5.2255 6.5121 -4.3276 10 6 5.5681 7.1048 -5.5136 11 1 5.2984 6.6370 -6.4489 12 6 6.2613 8.3076 -5.5136 13 7 6.5895 8.8779 -4.3738 14 14 6.7293 9.1157 -7.1314 15 1 6.2481 8.2793 -8.2601 16 1 6.1052 10.4609 -7.2115 17 1 8.2061 9.2500 -7.2087 18 6 2.1388 -1.1672 -0.0005 19 8 3.3535 -1.1680 0.0554 20 6 1.4029 -2.4437 -0.0689 21 6 0.1153 -2.5312 0.3877 22 6 -0.5575 -3.7579 0.3086 23 7 0.0381 -4.8115 -0.1965 24 6 1.2950 -4.7465 -0.6477 25 6 2.1400 -5.6928 -1.2174 26 6 3.3431 -5.0670 -1.4984 27 7 3.2670 -3.8062 -1.1317 28 7 1.9980 -3.5685 -0.5929 29 1 -0.3634 -0.0365 1.0270 30 1 -0.3634 0.9077 -0.4818 31 1 -0.3634 -0.8711 -0.5452 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5137 34 1 3.0415 0.9507 -1.9564 35 1 1.5000 1.8407 -1.9563 36 1 2.6275 3.7952 -0.9289 37 1 4.1693 2.9058 -0.9286 38 1 4.0620 2.7175 -3.3984 39 1 2.5202 3.6069 -3.3994 40 1 3.6482 5.5618 -2.3717 41 1 5.1897 4.6718 -2.3710 42 1 5.0829 4.4832 -4.8407 43 1 3.5415 5.3732 -4.8422 44 1 5.4667 6.9328 -3.4876 45 1 7.0735 9.7186 -4.3738 46 1 -0.3767 -1.6644 0.8035 47 1 -1.5736 -3.8362 0.6660 48 1 1.9010 -6.7289 -1.4067 49 1 4.2051 -5.5383 -1.9472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264043144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:43 Heat of formation + Delta-G solvation = 111.195102 kcal Electronic energy + Delta-G solvation = -28529.228945 eV Core-core repulsion = 24494.808176 eV Total energy + Delta-G solvation = -4034.420769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.89163 -40.57927 -38.52288 -37.00850 -36.05260 -34.85461 -34.15797 -32.35647 -31.54517 -30.28213 -29.50932 -28.01863 -27.41377 -25.67719 -24.20580 -23.90162 -22.85422 -22.03756 -21.01455 -20.69647 -20.06427 -18.76581 -18.53471 -17.22092 -16.99095 -16.90452 -16.64309 -15.97630 -15.81149 -15.70471 -14.77157 -14.64408 -14.55840 -14.34004 -14.03453 -13.76344 -13.55722 -13.54581 -13.39620 -13.19051 -12.90436 -12.79717 -12.54217 -12.31820 -11.74455 -11.55259 -11.51418 -11.45524 -11.19123 -10.96314 -10.87859 -10.70204 -10.69026 -10.41711 -10.23726 -10.20194 -10.00935 -9.93948 -9.65238 -9.28591 -8.83374 -8.46474 -6.87009 -5.72792 -3.00975 -0.44641 0.26668 1.29333 1.94323 2.19831 2.36379 2.86139 3.23308 3.37545 3.45608 3.50907 3.53494 3.63563 4.06167 4.36278 4.40016 4.46901 4.52251 4.62018 4.65770 4.73440 4.75853 4.94791 4.96103 4.98440 5.08162 5.23297 5.27855 5.42214 5.43615 5.53419 5.60740 5.63586 5.74598 5.77317 5.87649 5.96484 5.99338 6.03805 6.16643 6.36404 6.36883 6.43850 6.51533 6.56521 6.93642 6.94216 6.98367 6.99777 7.39029 7.74081 8.46679 9.57383 10.17121 10.51833 11.50455 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.001463 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.921964 B =19130.515976 C =19904.846668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.600 5.600 3 C 0.115 3.885 4 C -0.135 4.135 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.126 4.126 8 C 0.152 3.848 9 N -0.735 5.735 10 C -0.238 4.238 11 H 0.070 0.930 12 C -0.017 4.017 13 N -0.934 5.934 14 Si 0.907 3.093 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.291 1.291 18 C 0.551 3.449 19 O -0.485 6.485 20 C 0.156 3.844 21 C -0.211 4.211 22 C 0.172 3.828 23 N -0.445 5.445 24 C 0.243 3.757 25 C -0.249 4.249 26 C 0.080 3.920 27 N -0.275 5.275 28 N -0.293 5.293 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.192 0.808 47 H 0.188 0.812 48 H 0.166 0.834 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.531 -29.383 15.026 38.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.334 5.334 3 C -0.006 4.006 4 C -0.174 4.174 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.164 4.164 8 C 0.024 3.976 9 N -0.379 5.379 10 C -0.369 4.369 11 H 0.088 0.912 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.739 3.261 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C 0.336 3.664 19 O -0.357 6.357 20 C 0.037 3.963 21 C -0.235 4.235 22 C -0.014 4.014 23 N -0.156 5.156 24 C 0.017 3.983 25 C -0.280 4.280 26 C -0.098 4.098 27 N -0.098 5.098 28 N -0.067 5.067 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.209 0.791 47 H 0.205 0.795 48 H 0.184 0.816 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -19.332 -29.175 14.736 37.974 hybrid contribution 0.204 0.600 -0.617 0.884 sum -19.128 -28.575 14.118 37.172 Atomic orbital electron populations 1.22644 0.79413 1.05009 1.02176 1.47675 1.07276 1.05666 1.72797 1.21746 0.97977 0.82532 0.98355 1.21979 1.01090 0.98421 0.95865 1.21519 1.00297 0.95409 0.98108 1.21490 1.00401 0.97617 0.95625 1.21723 1.00018 0.95977 0.98643 1.20659 0.94638 0.88871 0.93416 1.42401 1.67063 1.22061 1.06384 1.19317 1.28992 1.02370 0.86241 0.91161 1.24753 1.01505 0.98101 0.96881 1.69675 1.45315 1.19491 1.23883 0.86103 0.77877 0.79179 0.82979 1.20577 1.21880 1.21860 1.17546 0.87184 0.82553 0.79148 1.90949 1.12289 1.86171 1.46286 1.20311 0.92347 0.87544 0.96100 1.23132 0.92869 1.02998 1.04548 1.23436 1.00329 0.86495 0.91106 1.67936 1.06058 1.30851 1.10772 1.20787 0.89534 0.86574 1.01389 1.21095 0.93090 1.00554 1.13215 1.24064 0.98621 0.90853 0.96262 1.78356 0.93470 1.17805 1.20214 1.47157 1.12327 1.07528 1.39664 0.90957 0.89606 0.89516 0.89500 0.89122 0.91500 0.91738 0.91764 0.91631 0.92145 0.92215 0.92126 0.92082 0.96564 0.96615 0.78347 0.93615 0.79124 0.79503 0.81601 0.78132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.12 8.72 59.85 0.52 0.64 16 2 N -0.60 -4.24 2.87 -182.82 -0.53 -4.76 16 3 C 0.12 0.88 5.42 -4.04 -0.02 0.85 16 4 C -0.14 -1.23 5.54 -26.73 -0.15 -1.38 16 5 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 6 C -0.11 -1.49 5.21 -26.73 -0.14 -1.63 16 7 C -0.13 -2.11 5.33 -26.73 -0.14 -2.25 16 8 C 0.15 3.23 6.26 -4.04 -0.03 3.21 16 9 N -0.74 -19.68 5.60 -59.91 -0.34 -20.02 16 10 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 11 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 12 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 13 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 14 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 18 C 0.55 5.82 7.56 -12.49 -0.09 5.73 16 19 O -0.49 -7.27 15.97 5.28 0.08 -7.19 16 20 C 0.16 1.44 6.50 -81.98 -0.53 0.90 16 21 C -0.21 -0.93 7.61 -39.36 -0.30 -1.23 16 22 C 0.17 0.74 11.26 -17.14 -0.19 0.55 16 23 N -0.45 -3.69 10.44 -12.24 -0.13 -3.82 16 24 C 0.24 2.51 7.93 -155.56 -1.23 1.27 16 25 C -0.25 -2.21 10.91 -39.18 -0.43 -2.64 16 26 C 0.08 0.74 11.93 -17.59 -0.21 0.53 16 27 N -0.27 -3.56 11.96 30.46 0.36 -3.19 16 28 N -0.29 -3.41 3.93 -8.87 -0.03 -3.44 16 29 H 0.07 -0.01 7.14 -51.93 -0.37 -0.38 16 30 H 0.09 0.14 8.06 -51.93 -0.42 -0.28 16 31 H 0.09 0.15 5.10 -51.93 -0.27 -0.12 16 32 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.09 0.85 7.38 -51.93 -0.38 0.47 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.19 0.10 4.12 -52.49 -0.22 -0.12 16 47 H 0.19 -0.07 8.06 -52.49 -0.42 -0.49 16 48 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 49 H 0.20 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -39.85 404.88 -9.53 -49.38 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.43 Total: 1.84 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -3.33 Total: -4.50 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 0.07 Total: -63.60 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.08 Total: -7.19 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.85 -9.53 -49.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264043144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.573 kcal (2) G-P(sol) polarization free energy of solvation -39.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds