Wall clock time and date at job start Wed Apr 1 2020 03:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00322 * 2 1 4 4 H 1.48503 * 109.46987 * 273.99308 * 3 2 1 5 5 H 1.48497 * 109.46797 * 33.99043 * 3 2 1 6 6 H 1.48493 * 109.47224 * 153.99003 * 3 2 1 7 7 C 1.38815 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99867 * 352.04374 * 7 2 1 9 9 N 1.36933 * 120.00260 * 172.04457 * 7 2 1 10 10 C 1.47421 * 125.64915 * 307.09624 * 9 7 2 11 11 C 1.54906 * 104.83668 * 155.90498 * 10 9 7 12 12 C 1.55155 * 101.58458 * 37.00207 * 11 10 9 13 13 C 1.47022 * 125.64986 * 127.12544 * 9 7 2 14 14 H 1.08994 * 109.88583 * 300.60658 * 13 9 7 15 15 C 1.53002 * 109.87789 * 61.61309 * 13 9 7 16 16 C 1.53006 * 109.47109 * 289.46153 * 15 13 9 17 17 C 1.53001 * 109.47143 * 186.09399 * 16 15 13 18 18 N 1.46490 * 109.47068 * 180.02562 * 17 16 15 19 19 C 1.34785 * 120.00332 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99168 * 359.97438 * 19 18 17 21 21 C 1.50689 * 120.00281 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.47379 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.47665 * 180.02562 * 22 21 19 24 24 C 1.50697 * 109.47420 * 180.02562 * 23 22 21 25 25 C 1.38675 * 120.42291 * 89.99705 * 24 23 22 26 26 C 1.38618 * 118.42272 * 180.02562 * 25 24 23 27 27 C 1.38232 * 119.16024 * 0.02562 * 26 25 24 28 28 N 1.31846 * 120.76678 * 359.97438 * 27 26 25 29 29 C 1.31891 * 121.72496 * 359.70816 * 28 27 26 30 30 H 0.96998 * 120.00263 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.36554 * 274.74106 * 10 9 7 32 32 H 1.08999 * 110.36964 * 37.05680 * 10 9 7 33 33 H 1.09000 * 111.01020 * 155.08088 * 11 10 9 34 34 H 1.08998 * 111.00174 * 278.89416 * 11 10 9 35 35 H 1.08991 * 110.72274 * 206.13795 * 12 11 10 36 36 H 1.09001 * 110.71839 * 82.86263 * 12 11 10 37 37 H 1.08999 * 109.46931 * 169.46710 * 15 13 9 38 38 H 1.08996 * 109.47686 * 49.46467 * 15 13 9 39 39 H 1.09003 * 109.46860 * 66.09650 * 16 15 13 40 40 H 1.08998 * 109.47129 * 306.09866 * 16 15 13 41 41 H 1.08995 * 109.47090 * 60.00009 * 17 16 15 42 42 H 1.09002 * 109.46782 * 300.00197 * 17 16 15 43 43 H 0.97004 * 120.00276 * 0.27484 * 18 17 16 44 44 H 1.08998 * 109.47725 * 300.00069 * 21 19 18 45 45 H 1.09003 * 109.47132 * 59.99998 * 21 19 18 46 46 H 1.09010 * 109.47146 * 300.00439 * 22 21 19 47 47 H 1.08995 * 109.46867 * 59.99668 * 22 21 19 48 48 H 1.08998 * 109.46776 * 300.00398 * 23 22 21 49 49 H 1.09003 * 109.47055 * 60.00085 * 23 22 21 50 50 H 1.07997 * 120.78181 * 359.97438 * 25 24 23 51 51 H 1.07999 * 120.42250 * 180.02562 * 26 25 24 52 52 H 1.08008 * 119.61437 * 179.97438 * 27 26 25 53 53 H 1.07998 * 119.61741 * 180.31475 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4133 2.0951 -1.3967 5 1 1.4924 2.6267 0.7827 6 1 3.5874 1.4172 0.6139 7 6 2.0102 -1.2022 -0.0005 8 1 1.4779 -2.1331 0.1285 9 7 3.3696 -1.2079 -0.1647 10 6 4.1052 -0.5564 -1.2637 11 6 5.5261 -0.3096 -0.6985 12 6 5.7454 -1.5831 0.1602 13 6 4.3375 -1.8654 0.7256 14 1 4.2513 -1.4575 1.7327 15 6 4.0797 -3.3733 0.7514 16 6 2.7758 -3.6551 1.5007 17 6 2.5950 -5.1661 1.6591 18 7 1.3463 -5.4360 2.3760 19 6 0.9775 -6.7067 2.6325 20 8 1.6793 -7.6268 2.2693 21 6 -0.3067 -6.9843 3.3704 22 6 -0.4877 -8.4952 3.5287 23 6 -1.7918 -8.7771 4.2774 24 6 -1.9697 -10.2653 4.4339 25 6 -1.4639 -10.9198 5.5469 26 6 -1.6508 -12.2896 5.6484 27 6 -2.3299 -12.9530 4.6436 28 7 -2.7973 -12.2980 3.5992 29 6 -2.6435 -10.9943 3.4725 30 1 -0.4850 0.8400 -0.0004 31 1 4.1511 -1.2141 -2.1317 32 1 3.6325 0.3895 -1.5282 33 1 6.2609 -0.2484 -1.5013 34 1 5.5503 0.5879 -0.0804 35 1 6.4526 -1.3878 0.9662 36 1 6.0853 -2.4126 -0.4600 37 1 4.9050 -3.8743 1.2573 38 1 3.9997 -3.7458 -0.2698 39 1 1.9373 -3.2459 0.9372 40 1 2.8143 -3.1886 2.4850 41 1 3.4335 -5.5753 2.2225 42 1 2.5565 -5.6326 0.6747 43 1 0.7830 -4.7002 2.6629 44 1 -0.2685 -6.5175 4.3547 45 1 -1.1453 -6.5754 2.8068 46 1 -0.5262 -8.9617 2.5443 47 1 0.3508 -8.9045 4.0921 48 1 -1.7538 -8.3106 5.2618 49 1 -2.6302 -8.3679 3.7136 50 1 -0.9362 -10.3753 6.3159 51 1 -1.2707 -12.8317 6.5017 52 1 -2.4793 -14.0203 4.7150 53 1 -3.0447 -10.4913 2.6050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266240759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:01 Heat of formation + Delta-G solvation = -26.180400 kcal Electronic energy + Delta-G solvation = -28916.011757 eV Core-core repulsion = 24979.174282 eV Total energy + Delta-G solvation = -3936.837474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.12373 -40.68497 -39.62585 -36.76058 -36.10728 -34.59666 -33.88840 -33.19651 -32.29571 -31.70323 -29.99077 -28.15186 -26.42817 -25.58733 -24.47535 -23.91007 -22.81254 -22.05887 -21.74058 -21.16301 -20.77567 -18.87160 -18.09978 -17.83763 -17.75491 -17.43716 -16.89846 -16.85223 -16.26722 -15.99879 -15.90602 -15.25890 -14.98391 -14.89409 -14.75936 -14.56008 -14.21586 -14.08363 -13.98656 -13.92092 -13.59583 -13.44071 -13.27356 -13.04039 -12.96093 -12.86902 -12.60679 -12.44747 -12.41509 -12.14389 -12.11914 -11.89058 -11.63875 -11.60483 -11.38842 -11.35644 -11.10870 -10.82669 -10.68156 -10.61445 -10.35720 -10.04568 -9.85325 -8.40064 -8.04097 -5.76016 0.19295 0.37398 1.32647 1.40040 1.53253 1.68251 2.30501 2.45116 2.88535 3.13279 3.45079 3.56401 3.78807 3.81966 3.92211 3.92949 4.04458 4.10060 4.11078 4.17393 4.19116 4.25096 4.27245 4.29936 4.49416 4.53870 4.59557 4.61813 4.72983 4.76701 4.81309 4.82213 4.84465 4.86475 4.94824 4.99285 5.00683 5.04478 5.13050 5.19631 5.22836 5.25347 5.30387 5.38240 5.44567 5.45226 5.51493 5.57755 5.67271 5.83191 6.04889 6.45337 6.60677 6.98631 7.05251 7.28356 7.57660 8.36489 9.02199 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.001614 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.108781 B =17344.452709 C =18298.991679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.014 4.014 3 Si 0.944 3.056 4 H -0.288 1.288 5 H -0.310 1.310 6 H -0.250 1.250 7 C -0.236 4.236 8 H 0.066 0.934 9 N -0.619 5.619 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.146 3.854 14 H 0.029 0.971 15 C -0.107 4.107 16 C -0.128 4.128 17 C 0.130 3.870 18 N -0.724 5.724 19 C 0.503 3.497 20 O -0.594 6.594 21 C -0.134 4.134 22 C -0.090 4.090 23 C -0.070 4.070 24 C -0.135 4.135 25 C -0.082 4.082 26 C -0.170 4.170 27 C 0.073 3.927 28 N -0.518 5.518 29 C 0.079 3.921 30 H 0.261 0.739 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.412 0.588 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.155 0.845 51 H 0.161 0.839 52 H 0.173 0.827 53 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 -16.560 12.772 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.211 4.211 3 Si 0.774 3.226 4 H -0.215 1.215 5 H -0.239 1.239 6 H -0.174 1.174 7 C -0.366 4.366 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.154 4.154 13 C 0.041 3.959 14 H 0.047 0.953 15 C -0.147 4.147 16 C -0.165 4.165 17 C 0.006 3.994 18 N -0.375 5.375 19 C 0.292 3.708 20 O -0.475 6.475 21 C -0.173 4.173 22 C -0.128 4.128 23 C -0.108 4.108 24 C -0.137 4.137 25 C -0.108 4.108 26 C -0.189 4.189 27 C -0.084 4.084 28 N -0.227 5.227 29 C -0.077 4.077 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.249 0.751 44 H 0.141 0.859 45 H 0.132 0.868 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.115 0.885 49 H 0.108 0.892 50 H 0.173 0.827 51 H 0.179 0.821 52 H 0.190 0.810 53 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.565 -17.569 11.872 21.262 hybrid contribution -0.008 1.775 0.243 1.792 sum 1.557 -15.794 12.115 19.966 Atomic orbital electron populations 1.69878 1.07381 1.27276 1.54718 1.26487 0.95705 1.01500 0.97388 0.85732 0.79712 0.80133 0.77042 1.21514 1.23901 1.17405 1.18634 0.81005 0.92043 1.44883 0.91711 1.44750 1.01579 1.63638 1.24679 1.22002 0.92640 0.95018 0.92003 1.22766 0.95832 0.98215 1.00061 1.22585 0.95468 0.97536 0.99790 1.21324 0.89341 0.91940 0.93282 0.95259 1.21780 0.96459 0.96923 0.99493 1.21960 1.00535 0.92877 1.01171 1.21255 0.86170 0.96366 0.95605 1.46162 1.24644 1.08398 1.58311 1.21477 0.88393 0.81921 0.79018 1.90664 1.56727 1.45213 1.54878 1.21743 0.94120 0.98668 1.02805 1.21199 0.97333 0.93854 1.00431 1.20566 0.97720 0.89756 1.02719 1.21096 0.98731 0.98269 0.95631 1.21905 0.96512 0.94971 0.97417 1.22483 0.99877 0.95404 1.01151 1.23201 0.94247 1.01442 0.89479 1.67660 1.20018 1.10395 1.24652 1.22951 0.96282 0.89738 0.98740 0.92958 0.95177 0.96365 0.88675 0.92436 0.89355 0.89948 0.90449 0.93347 0.90996 0.91986 0.91920 0.93734 0.75150 0.85891 0.86770 0.93262 0.92453 0.88491 0.89165 0.82713 0.82096 0.81026 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.82 13.97 21.65 0.30 -56.51 16 2 C -0.01 -0.76 5.50 84.86 0.47 -0.30 16 3 Si 0.94 45.59 25.12 68.60 1.72 47.31 16 4 H -0.29 -13.76 7.00 99.48 0.70 -13.07 16 5 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 6 H -0.25 -11.37 6.44 99.48 0.64 -10.73 16 7 C -0.24 -12.50 9.35 84.03 0.79 -11.71 16 8 H 0.07 3.68 5.18 -2.91 -0.02 3.66 16 9 N -0.62 -27.51 2.38 -668.27 -1.59 -29.11 16 10 C 0.11 4.31 6.19 86.85 0.54 4.85 16 11 C -0.13 -3.99 7.08 31.98 0.23 -3.76 16 12 C -0.12 -3.21 6.47 31.78 0.21 -3.00 16 13 C 0.15 5.21 3.21 45.34 0.15 5.35 16 14 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 15 C -0.11 -3.39 4.69 30.60 0.14 -3.25 16 16 C -0.13 -4.21 4.86 30.60 0.15 -4.06 16 17 C 0.13 3.89 5.67 86.38 0.49 4.38 16 18 N -0.72 -19.22 5.56 -463.08 -2.57 -21.79 16 19 C 0.50 13.43 7.83 87.65 0.69 14.11 16 20 O -0.59 -20.91 15.98 -3.03 -0.05 -20.96 16 21 C -0.13 -2.21 5.70 29.84 0.17 -2.04 16 22 C -0.09 -1.57 4.49 30.59 0.14 -1.43 16 23 C -0.07 -0.84 5.37 29.85 0.16 -0.68 16 24 C -0.14 -2.13 5.15 -19.77 -0.10 -2.23 16 25 C -0.08 -1.11 9.86 22.47 0.22 -0.89 16 26 C -0.17 -2.17 10.11 22.36 0.23 -1.94 16 27 C 0.07 1.18 11.18 84.69 0.95 2.13 16 28 N -0.52 -11.17 10.36 -195.83 -2.03 -13.20 16 29 C 0.08 1.52 10.86 84.67 0.92 2.43 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.02 0.80 4.62 -2.39 -0.01 0.79 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.84 7.54 -2.39 -0.02 1.82 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 2.02 7.85 -2.39 -0.02 2.00 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 2.95 4.50 -2.39 -0.01 2.94 16 40 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.41 9.55 8.47 -92.71 -0.79 8.77 16 44 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 47 H 0.06 1.14 8.10 -2.39 -0.02 1.13 16 48 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 49 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 50 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 51 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 52 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 53 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -73.87 418.09 2.33 -71.54 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.03 Total: 24.77 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 6.52 Total: -2.05 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.89 Total: -120.61 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.72 Total: 47.31 kcal Total: -73.87 2.33 -71.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266240759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.359 kcal (2) G-P(sol) polarization free energy of solvation -73.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds