Wall clock time and date at job start Wed Apr 1 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47146 * 264.80378 * 3 2 1 5 5 H 1.48501 * 109.46747 * 24.80107 * 3 2 1 6 6 H 1.48497 * 109.47341 * 144.79816 * 3 2 1 7 7 C 1.38817 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99822 * 341.44376 * 7 2 1 9 9 N 1.36934 * 120.00119 * 161.44889 * 7 2 1 10 10 C 1.47750 * 125.82622 * 343.49327 * 9 7 2 11 11 C 1.54900 * 104.84276 * 204.25028 * 10 9 7 12 12 C 1.55157 * 101.58435 * 322.90219 * 11 10 9 13 13 C 1.47028 * 125.64758 * 163.49241 * 9 7 2 14 14 H 1.09004 * 109.88268 * 59.32896 * 13 9 7 15 15 C 1.53000 * 109.88311 * 298.31297 * 13 9 7 16 16 C 1.52991 * 109.46873 * 67.78554 * 15 13 9 17 17 C 1.53004 * 109.47186 * 177.30424 * 16 15 13 18 18 N 1.46497 * 109.47684 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00442 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99851 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00173 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.47415 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47455 * 179.97438 * 22 21 19 24 24 C 1.50700 * 109.47047 * 179.97438 * 23 22 21 25 25 C 1.38668 * 120.41989 * 90.00823 * 24 23 22 26 26 C 1.38626 * 118.42670 * 179.97438 * 25 24 23 27 27 C 1.38228 * 119.15759 * 359.97438 * 26 25 24 28 28 N 1.31863 * 120.76178 * 359.97438 * 27 26 25 29 29 C 1.31876 * 121.72842 * 0.04890 * 28 27 26 30 30 H 0.97001 * 120.00258 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.43178 * 85.36871 * 10 9 7 32 32 H 1.09002 * 110.28753 * 323.05758 * 10 9 7 33 33 H 1.09009 * 111.00123 * 204.83098 * 11 10 9 34 34 H 1.08996 * 111.03685 * 80.99897 * 11 10 9 35 35 H 1.08995 * 110.71750 * 277.14146 * 12 11 10 36 36 H 1.08994 * 110.71789 * 153.86512 * 12 11 10 37 37 H 1.08999 * 109.46665 * 307.78419 * 15 13 9 38 38 H 1.09000 * 109.46648 * 187.78476 * 15 13 9 39 39 H 1.09003 * 109.47455 * 57.30654 * 16 15 13 40 40 H 1.09000 * 109.47790 * 297.30270 * 16 15 13 41 41 H 1.08998 * 109.47146 * 59.99533 * 17 16 15 42 42 H 1.09005 * 109.46843 * 299.99854 * 17 16 15 43 43 H 0.97004 * 119.99294 * 359.97438 * 18 17 16 44 44 H 1.08998 * 109.47383 * 59.99996 * 21 19 18 45 45 H 1.09005 * 109.46958 * 300.00102 * 21 19 18 46 46 H 1.09003 * 109.46736 * 59.99743 * 22 21 19 47 47 H 1.09000 * 109.46631 * 300.00509 * 22 21 19 48 48 H 1.09010 * 109.46794 * 60.00082 * 23 22 21 49 49 H 1.08994 * 109.47247 * 300.00340 * 23 22 21 50 50 H 1.08001 * 120.78575 * 359.94853 * 25 24 23 51 51 H 1.07992 * 120.42170 * 179.71925 * 26 25 24 52 52 H 1.07998 * 119.62231 * 180.02562 * 27 26 25 53 53 H 1.08001 * 119.62140 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6075 1.9830 -1.3943 5 1 1.3970 2.6818 0.5873 6 1 3.4884 1.4744 0.8071 7 6 2.0102 -1.2022 -0.0005 8 1 1.5123 -2.1133 0.2967 9 7 3.3262 -1.2328 -0.3778 10 6 4.0377 -0.1725 -1.1210 11 6 5.2138 -0.8987 -1.8201 12 6 5.6212 -1.9394 -0.7439 13 6 4.2690 -2.3289 -0.1103 14 1 3.9015 -3.2518 -0.5591 15 6 4.4359 -2.5149 1.3991 16 6 3.1283 -3.0387 1.9961 17 6 3.3154 -3.2884 3.4939 18 7 2.0635 -3.7906 4.0655 19 6 1.9919 -4.0827 5.3793 20 8 2.9637 -3.9294 6.0884 21 6 0.7039 -4.5987 5.9673 22 6 0.8911 -4.8485 7.4652 23 6 -0.4168 -5.3718 8.0623 24 6 -0.2321 -5.6185 9.5375 25 6 -0.4898 -4.6116 10.4554 26 6 -0.3068 -4.8837 11.8023 27 6 0.1231 -6.1412 12.1829 28 7 0.3575 -7.0751 11.2820 29 6 0.1945 -6.8515 9.9926 30 1 -0.4850 0.8400 0.0004 31 1 4.4143 0.5861 -0.4347 32 1 3.3768 0.2789 -1.8611 33 1 6.0322 -0.2086 -2.0259 34 1 4.8817 -1.3912 -2.7341 35 1 6.2795 -1.4886 -0.0013 36 1 6.0947 -2.8060 -1.2053 37 1 4.6872 -1.5584 1.8574 38 1 5.2353 -3.2307 1.5907 39 1 2.8520 -3.9713 1.5040 40 1 2.3395 -2.3014 1.8465 41 1 3.5917 -2.3559 3.9860 42 1 4.1042 -4.0258 3.6435 43 1 1.2861 -3.9128 3.4984 44 1 0.4274 -5.5309 5.4749 45 1 -0.0848 -3.8611 5.8181 46 1 1.1673 -3.9160 7.9573 47 1 1.6799 -5.5858 7.6146 48 1 -0.6934 -6.3043 7.5701 49 1 -1.2052 -4.6343 7.9127 50 1 -0.8248 -3.6382 10.1286 51 1 -0.4936 -4.1218 12.5444 52 1 0.2678 -6.3615 13.2302 53 1 0.3970 -7.6411 9.2841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266240760.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:04 Heat of formation + Delta-G solvation = -22.677700 kcal Electronic energy + Delta-G solvation = -29055.636698 eV Core-core repulsion = 25118.951112 eV Total energy + Delta-G solvation = -3936.685586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.13029 -40.69379 -39.72512 -36.76952 -36.11425 -34.57491 -33.91168 -33.20663 -32.30776 -31.71987 -30.06436 -28.17996 -26.44463 -25.65947 -24.48205 -23.96575 -23.08337 -22.07035 -21.90263 -21.12290 -20.70297 -18.79632 -18.11080 -17.76779 -17.51286 -17.41495 -17.04753 -16.84607 -16.67153 -15.99309 -15.83784 -15.13813 -14.99708 -14.96057 -14.79981 -14.68186 -14.35077 -14.21975 -13.93558 -13.87134 -13.67687 -13.45916 -13.28796 -13.11287 -12.89889 -12.73101 -12.63259 -12.55325 -12.40929 -12.15404 -12.07720 -11.82125 -11.64424 -11.54145 -11.42725 -11.35169 -11.06676 -10.83649 -10.71609 -10.69089 -10.36896 -10.05517 -9.85786 -8.95445 -8.07636 -5.30943 0.18627 0.35994 1.29975 1.39307 1.44728 1.67672 2.29753 2.46149 2.87845 3.15837 3.36821 3.55873 3.78133 3.81320 3.87291 3.92194 3.96638 4.09299 4.09825 4.13991 4.18313 4.24601 4.25470 4.28698 4.46640 4.50613 4.54617 4.62551 4.68325 4.74894 4.78250 4.79347 4.81999 4.85536 4.88677 4.96909 4.99331 5.02421 5.12214 5.16968 5.20088 5.22247 5.28129 5.37188 5.39272 5.44818 5.49503 5.62795 5.64416 5.82057 5.82476 6.20231 6.60041 6.85637 7.04121 7.28060 7.65130 8.23448 9.11425 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.001711 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.377857 B =16364.799618 C =17294.434703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.045 4.045 3 Si 0.936 3.064 4 H -0.281 1.281 5 H -0.320 1.320 6 H -0.271 1.271 7 C -0.198 4.198 8 H 0.085 0.915 9 N -0.622 5.622 10 C 0.089 3.911 11 C -0.121 4.121 12 C -0.118 4.118 13 C 0.151 3.849 14 H 0.044 0.956 15 C -0.112 4.112 16 C -0.129 4.129 17 C 0.130 3.870 18 N -0.723 5.723 19 C 0.503 3.497 20 O -0.594 6.594 21 C -0.134 4.134 22 C -0.090 4.090 23 C -0.070 4.070 24 C -0.136 4.136 25 C -0.085 4.085 26 C -0.171 4.171 27 C 0.074 3.926 28 N -0.517 5.517 29 C 0.082 3.918 30 H 0.256 0.744 31 H 0.021 0.979 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.413 0.587 44 H 0.124 0.876 45 H 0.114 0.886 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.150 0.850 51 H 0.159 0.841 52 H 0.173 0.827 53 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -11.863 14.346 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.238 4.238 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.250 1.250 6 H -0.197 1.197 7 C -0.327 4.327 8 H 0.102 0.898 9 N -0.348 5.348 10 C -0.035 4.035 11 C -0.159 4.159 12 C -0.155 4.155 13 C 0.046 3.954 14 H 0.062 0.938 15 C -0.152 4.152 16 C -0.167 4.167 17 C 0.006 3.994 18 N -0.374 5.374 19 C 0.291 3.709 20 O -0.475 6.475 21 C -0.173 4.173 22 C -0.128 4.128 23 C -0.107 4.107 24 C -0.138 4.138 25 C -0.111 4.111 26 C -0.190 4.190 27 C -0.082 4.082 28 N -0.225 5.225 29 C -0.074 4.074 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.249 0.751 44 H 0.142 0.858 45 H 0.132 0.868 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.168 0.832 51 H 0.177 0.823 52 H 0.190 0.810 53 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.984 -12.501 15.132 19.854 hybrid contribution -0.592 2.187 -0.385 2.298 sum 2.392 -10.315 14.747 18.154 Atomic orbital electron populations 1.69884 1.06593 1.26399 1.58063 1.25431 0.95692 0.99883 1.02834 0.86201 0.77544 0.81767 0.77685 1.20796 1.25014 1.19673 1.18695 0.83885 0.94002 1.36097 0.89795 1.45170 1.07152 1.18595 1.63881 1.22223 0.94618 0.92615 0.94093 1.22677 0.96708 0.98409 0.98100 1.22625 0.95504 0.99644 0.97765 1.21271 0.89720 0.90837 0.93618 0.93812 1.21830 0.96678 1.00101 0.96582 1.21927 1.00383 1.01928 0.92476 1.21238 0.86367 0.97903 0.93902 1.46135 1.15487 1.66133 1.09660 1.21491 0.91227 0.76557 0.81602 1.90664 1.40527 1.55488 1.60868 1.21744 0.94011 1.04760 0.96781 1.21201 0.97313 1.01140 0.93191 1.20566 0.97388 1.03648 0.89140 1.21101 0.99917 0.94835 0.97900 1.21899 0.96224 0.99774 0.93219 1.22467 1.00347 0.98873 0.97347 1.23188 0.95245 0.89685 1.00128 1.67670 1.15599 1.35944 1.03321 1.22976 0.95545 0.96603 0.92277 0.93496 0.96154 0.94697 0.89077 0.90751 0.90633 0.88394 0.94007 0.90088 0.91403 0.90837 0.94149 0.91824 0.75092 0.85820 0.86770 0.93137 0.92642 0.88587 0.89024 0.83201 0.82330 0.80972 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.46 13.97 21.65 0.30 -58.16 16 2 C -0.05 -2.57 5.47 84.86 0.46 -2.10 16 3 Si 0.94 46.97 24.24 68.60 1.66 48.63 16 4 H -0.28 -13.57 6.43 99.48 0.64 -12.93 16 5 H -0.32 -16.64 7.11 99.48 0.71 -15.93 16 6 H -0.27 -13.19 6.20 99.48 0.62 -12.57 16 7 C -0.20 -10.37 8.39 84.04 0.70 -9.66 16 8 H 0.08 4.57 6.63 -2.91 -0.02 4.55 16 9 N -0.62 -27.40 2.99 -667.42 -1.99 -29.40 16 10 C 0.09 3.63 4.67 86.79 0.41 4.04 16 11 C -0.12 -3.51 7.08 31.98 0.23 -3.29 16 12 C -0.12 -3.10 6.48 31.78 0.21 -2.89 16 13 C 0.15 5.13 3.22 45.34 0.15 5.27 16 14 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 15 C -0.11 -3.52 4.72 30.59 0.14 -3.38 16 16 C -0.13 -4.18 4.64 30.59 0.14 -4.04 16 17 C 0.13 3.94 5.67 86.38 0.49 4.43 16 18 N -0.72 -19.31 5.56 -463.07 -2.57 -21.88 16 19 C 0.50 13.59 7.83 87.66 0.69 14.28 16 20 O -0.59 -21.23 15.98 -3.03 -0.05 -21.28 16 21 C -0.13 -2.24 5.70 29.85 0.17 -2.07 16 22 C -0.09 -1.60 4.49 30.59 0.14 -1.46 16 23 C -0.07 -0.86 5.37 29.85 0.16 -0.70 16 24 C -0.14 -2.17 5.15 -19.77 -0.10 -2.27 16 25 C -0.09 -1.26 9.86 22.47 0.22 -1.04 16 26 C -0.17 -2.35 10.11 22.36 0.23 -2.12 16 27 C 0.07 1.21 11.18 84.69 0.95 2.16 16 28 N -0.52 -10.86 10.36 -195.84 -2.03 -12.89 16 29 C 0.08 1.51 10.86 84.67 0.92 2.43 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.02 0.88 5.44 -2.38 -0.01 0.87 16 32 H 0.03 1.57 6.13 -2.39 -0.01 1.55 16 33 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 1.86 7.85 -2.39 -0.02 1.84 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 3.00 4.92 -2.39 -0.01 2.99 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.41 9.45 8.47 -92.71 -0.79 8.66 16 44 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 47 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 48 H 0.10 0.87 8.09 -2.38 -0.02 0.85 16 49 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 50 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 51 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 52 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 53 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -75.26 415.67 1.56 -73.70 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.05 Total: 23.70 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 6.30 Total: -2.42 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -6.29 Total: -122.33 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.66 Total: 48.63 kcal Total: -75.26 1.56 -73.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266240760.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.017 kcal (2) G-P(sol) polarization free energy of solvation -75.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds