Wall clock time and date at job start Wed Apr 1 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.33357 * 117.33765 * 89.99900 * 11 10 9 13 13 O 1.21281 * 118.77025 * 359.94082 * 12 11 10 14 14 C 1.50330 * 122.46491 * 179.97438 * 12 11 10 15 15 C 1.52901 * 109.35287 * 338.47434 * 14 12 11 16 16 C 1.53119 * 109.29290 * 52.63961 * 15 14 12 17 17 H 1.09000 * 111.55897 * 60.95972 * 16 15 14 18 18 C 1.44683 * 117.33604 * 269.73751 * 11 10 9 19 19 H 1.09002 * 109.81840 * 47.13974 * 18 11 10 20 20 C 1.54151 * 110.97618 * 285.24070 * 18 11 10 21 21 C 1.54082 * 105.00048 * 217.94062 * 20 18 11 22 22 N 1.48767 * 107.93518 * 184.03940 * 16 15 14 23 23 C 1.46894 * 111.00050 * 316.84324 * 22 16 15 24 24 C 1.52994 * 109.47113 * 169.99676 * 23 22 16 25 25 C 1.52999 * 109.47145 * 180.02562 * 24 23 22 26 26 N 1.46505 * 109.47422 * 180.02562 * 25 24 23 27 27 C 1.36342 * 125.63340 * 269.69770 * 26 25 24 28 28 C 1.34855 * 108.21198 * 179.82684 * 27 26 25 29 29 C 1.40884 * 107.42201 * 0.42223 * 28 27 26 30 30 C 1.34853 * 107.41781 * 359.73796 * 29 28 27 31 31 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 33 33 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 34 34 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 35 35 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 36 36 H 1.09004 * 109.49255 * 98.43458 * 14 12 11 37 37 H 1.08993 * 109.49332 * 218.50944 * 14 12 11 38 38 H 1.08998 * 109.50411 * 172.58446 * 15 14 12 39 39 H 1.08999 * 109.50274 * 292.69237 * 15 14 12 40 40 H 1.08992 * 110.33799 * 336.82378 * 20 18 11 41 41 H 1.09000 * 110.33155 * 98.96218 * 20 18 11 42 42 H 1.09006 * 109.92415 * 117.63064 * 21 20 18 43 43 H 1.09000 * 109.92367 * 238.73514 * 21 20 18 44 44 H 1.09001 * 109.47232 * 290.00113 * 23 22 16 45 45 H 1.09002 * 109.47117 * 49.99894 * 23 22 16 46 46 H 1.09001 * 109.47429 * 300.00316 * 24 23 22 47 47 H 1.09003 * 109.46919 * 60.00667 * 24 23 22 48 48 H 1.09001 * 109.47111 * 300.00383 * 25 24 23 49 49 H 1.08994 * 109.47304 * 60.00426 * 25 24 23 50 50 H 1.07992 * 125.89545 * 359.95605 * 27 26 25 51 51 H 1.08008 * 126.28307 * 180.16050 * 28 27 26 52 52 H 1.07995 * 126.29174 * 179.73480 * 29 28 27 53 53 H 1.07998 * 125.89090 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4865 -2.6366 -0.0014 12 6 6.0990 -2.6378 1.1832 13 8 5.4227 -2.6376 2.1900 14 6 7.5963 -2.6385 1.3175 15 6 8.2206 -3.1671 0.0257 16 6 7.6653 -2.3792 -1.1639 17 1 7.9051 -1.3186 -1.0889 18 6 6.1509 -2.6413 -1.2867 19 1 5.7010 -1.8919 -1.9380 20 6 6.0681 -4.0324 -1.9456 21 6 7.4324 -4.2294 -2.6342 22 7 8.2149 -2.9808 -2.4086 23 6 9.6446 -3.2836 -2.2601 24 6 10.1151 -4.1202 -3.4515 25 6 11.6041 -4.4361 -3.2966 26 7 12.0548 -5.2367 -4.4378 27 6 12.0505 -6.5985 -4.5038 28 6 12.5334 -6.9636 -5.7088 29 6 12.8564 -5.7843 -6.4087 30 6 12.5532 -4.7432 -5.6070 31 1 -0.4850 0.8401 0.0004 32 1 3.8752 -0.6797 -0.8895 33 1 3.8746 -0.6808 0.8905 34 1 3.6579 -3.1514 0.8880 35 1 3.6585 -3.1495 -0.8920 36 1 7.9455 -1.6223 1.5009 37 1 7.8864 -3.2790 2.1503 38 1 9.3030 -3.0464 0.0687 39 1 7.9762 -4.2229 -0.0911 40 1 5.9112 -4.8012 -1.1891 41 1 5.2640 -4.0558 -2.6811 42 1 7.9498 -5.0829 -2.1961 43 1 7.2894 -4.3905 -3.7027 44 1 10.2111 -2.3531 -2.2232 45 1 9.8037 -3.8427 -1.3381 46 1 9.5485 -5.0507 -3.4885 47 1 9.9560 -3.5610 -4.3736 48 1 12.1709 -3.5058 -3.2594 49 1 11.7628 -4.9954 -2.3747 50 1 11.7160 -7.2691 -3.7262 51 1 12.6546 -7.9745 -6.0693 52 1 13.2708 -5.7250 -7.4042 53 1 12.6825 -3.6988 -5.8494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273748707.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:50 Heat of formation + Delta-G solvation = 6.396930 kcal Electronic energy + Delta-G solvation = -30630.525356 eV Core-core repulsion = 26695.100541 eV Total energy + Delta-G solvation = -3935.424815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21850 -41.88394 -39.90355 -37.15622 -35.94057 -34.89641 -34.31311 -32.90497 -31.64758 -30.07306 -29.59348 -28.98530 -27.07366 -25.90670 -24.95691 -23.54250 -22.99403 -22.37356 -21.30035 -20.74256 -20.65436 -19.45185 -18.89052 -18.29342 -17.90901 -17.50661 -16.94422 -16.56637 -16.31644 -15.97154 -15.78990 -15.44024 -15.19319 -14.89110 -14.79193 -14.69278 -14.62469 -14.39546 -14.03196 -13.75937 -13.62641 -13.52531 -13.15219 -13.10058 -12.96050 -12.89987 -12.83293 -12.58792 -12.52665 -12.48651 -12.29416 -12.12642 -11.98100 -11.81776 -11.78706 -11.67855 -11.60302 -11.51689 -10.82618 -10.58567 -9.68779 -9.45567 -9.32176 -9.00603 -8.34880 -6.39500 1.29949 1.31755 1.43110 1.43515 1.63631 1.97950 2.16445 2.19377 2.30648 2.93497 2.99899 3.36403 3.50440 3.62325 3.80507 3.84765 4.01526 4.09147 4.10270 4.18612 4.20622 4.31766 4.35158 4.36805 4.39370 4.42405 4.44709 4.52124 4.55434 4.69278 4.74033 4.79169 4.80476 4.81250 4.82668 4.84962 4.88732 5.00031 5.01261 5.10310 5.17958 5.25542 5.25769 5.33436 5.43721 5.44762 5.49432 5.62877 5.77177 6.04647 6.14079 6.19284 6.39050 6.58103 6.60465 6.66444 7.19680 7.25365 8.81544 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.002082 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.641445 B =13444.776959 C =13933.929974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.247 1.247 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.008 4.008 10 C 0.130 3.870 11 N -0.588 5.588 12 C 0.498 3.502 13 O -0.604 6.604 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.067 3.933 17 H 0.113 0.887 18 C 0.136 3.864 19 H 0.081 0.919 20 C -0.141 4.141 21 C 0.046 3.954 22 N -0.513 5.513 23 C 0.042 3.958 24 C -0.125 4.125 25 C 0.106 3.894 26 N -0.448 5.448 27 C -0.023 4.023 28 C -0.230 4.230 29 C -0.230 4.230 30 C -0.022 4.022 31 H 0.268 0.732 32 H 0.025 0.975 33 H 0.000 1.000 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.177 0.823 51 H 0.137 0.863 52 H 0.137 0.863 53 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.403 -10.112 -9.310 35.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.171 1.171 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.047 4.047 10 C 0.006 3.994 11 N -0.318 5.318 12 C 0.288 3.712 13 O -0.486 6.486 14 C -0.161 4.161 15 C -0.178 4.178 16 C -0.041 4.041 17 H 0.131 0.869 18 C 0.031 3.969 19 H 0.099 0.901 20 C -0.181 4.181 21 C -0.081 4.081 22 N -0.236 5.236 23 C -0.086 4.086 24 C -0.163 4.163 25 C -0.016 4.016 26 N -0.123 5.123 27 C -0.153 4.153 28 C -0.254 4.254 29 C -0.255 4.255 30 C -0.152 4.152 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.018 0.982 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.124 0.876 49 H 0.123 0.877 50 H 0.195 0.805 51 H 0.155 0.845 52 H 0.155 0.845 53 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 31.802 -9.449 -8.988 34.372 hybrid contribution -0.836 0.059 0.647 1.059 sum 30.967 -9.389 -8.341 33.417 Atomic orbital electron populations 1.70050 1.08082 1.28248 1.52171 1.25954 0.95661 1.03353 0.93959 0.85669 0.79615 0.78544 0.78858 1.20072 1.17058 1.20115 1.21279 0.91395 0.93460 1.50890 0.94536 1.19646 0.94370 0.94775 0.95879 1.21248 0.78961 0.97643 1.01500 1.47200 1.07109 1.71282 1.06190 1.21163 0.92831 0.75063 0.82122 1.90725 1.67977 1.52579 1.37300 1.21605 0.87682 1.05741 1.01073 1.22242 1.02840 1.00235 0.92493 1.22937 0.91055 1.00718 0.89430 0.86909 1.21505 0.93743 0.98501 0.83129 0.90121 1.22769 0.99142 0.96035 1.00115 1.23001 0.91933 0.92000 1.01208 1.65334 1.03632 1.23028 1.31614 1.22407 0.87902 1.00816 0.97492 1.21898 0.94690 1.00392 0.99357 1.21985 0.95174 0.96916 0.87490 1.44347 1.48039 1.06045 1.13860 1.22183 1.08446 0.84005 1.00699 1.21176 1.09166 0.99052 0.96041 1.21174 1.10080 0.92912 1.01292 1.22194 1.05851 1.00001 0.87201 0.92317 0.95668 0.98156 0.92887 0.90268 0.86738 0.87158 0.86474 0.91052 0.91338 0.90542 0.91830 0.89774 0.88793 0.91602 0.91671 0.91694 0.87618 0.87671 0.80544 0.84542 0.84530 0.80547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 2 C 0.01 0.49 5.47 84.66 0.46 0.96 16 3 Si 0.95 46.06 27.47 68.60 1.88 47.95 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.53 -31.91 9.66 25.60 0.25 -31.66 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.01 -0.42 4.35 29.85 0.13 -0.29 16 10 C 0.13 5.44 5.01 86.38 0.43 5.88 16 11 N -0.59 -19.12 2.45 -800.15 -1.96 -21.08 16 12 C 0.50 16.46 7.47 87.76 0.66 17.11 16 13 O -0.60 -26.85 16.21 -3.03 -0.05 -26.90 16 14 C -0.12 -2.34 6.07 29.70 0.18 -2.16 16 15 C -0.14 -1.77 3.93 30.60 0.12 -1.65 16 16 C 0.07 1.09 3.47 44.99 0.16 1.25 16 17 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 18 C 0.14 3.28 3.10 46.12 0.14 3.42 16 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 20 C -0.14 -2.83 5.73 31.35 0.18 -2.65 16 21 C 0.05 0.65 4.64 86.25 0.40 1.05 16 22 N -0.51 -6.82 5.43 -855.58 -4.65 -11.47 16 23 C 0.04 0.29 4.41 86.30 0.38 0.67 16 24 C -0.12 -0.93 5.29 30.59 0.16 -0.77 16 25 C 0.11 0.58 6.09 86.38 0.53 1.11 16 26 N -0.45 -5.29 2.75 -524.47 -1.44 -6.73 16 27 C -0.02 -0.31 11.43 83.21 0.95 0.64 16 28 C -0.23 -3.73 10.86 22.14 0.24 -3.49 16 29 C -0.23 -3.75 10.86 22.14 0.24 -3.51 16 30 C -0.02 -0.30 11.43 83.21 0.95 0.65 16 31 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 32 H 0.03 1.19 7.20 -2.38 -0.02 1.18 16 33 H 0.00 0.00 7.57 -2.39 -0.02 -0.01 16 34 H 0.05 2.52 7.14 -2.38 -0.02 2.50 16 35 H 0.08 3.10 7.72 -2.39 -0.02 3.08 16 36 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.12 0.72 6.33 -2.39 -0.02 0.71 16 39 H 0.07 0.96 6.87 -2.39 -0.02 0.94 16 40 H 0.07 1.46 8.06 -2.39 -0.02 1.44 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 0.72 6.96 -2.38 -0.02 0.70 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.07 0.29 5.56 -2.39 -0.01 0.28 16 46 H 0.06 0.61 6.62 -2.39 -0.02 0.59 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 51 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 52 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 53 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -80.45 408.26 1.46 -78.98 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.82 Total: 12.90 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 6.56 Total: -13.44 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -7.75 Total: -99.49 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.95 kcal Total: -80.45 1.46 -78.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273748707.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.380 kcal (2) G-P(sol) polarization free energy of solvation -80.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds