Wall clock time and date at job start Wed Apr 1 2020 03:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00170 * 2 1 4 4 H 1.48499 * 109.46752 * 269.99940 * 3 2 1 5 5 H 1.48496 * 109.47081 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47182 * 149.99821 * 3 2 1 7 7 C 1.38810 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99969 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46906 * 184.97840 * 10 9 7 12 12 N 1.46494 * 109.46998 * 54.81293 * 11 10 9 13 13 C 1.34773 * 120.00176 * 64.35647 * 12 11 10 14 14 O 1.21697 * 119.99861 * 354.58543 * 13 12 11 15 15 C 1.46674 * 120.00080 * 174.59713 * 13 12 11 16 16 C 1.38059 * 126.20321 * 179.68769 * 15 13 12 17 17 C 1.39253 * 106.97417 * 179.84169 * 16 15 13 18 18 C 1.35959 * 108.03800 * 0.46812 * 17 16 15 19 19 N 1.35114 * 108.76953 * 359.66068 * 18 17 16 20 20 H 0.96997 * 125.69049 * 180.12001 * 19 18 17 21 21 C 1.51026 * 123.84971 * 179.58699 * 18 17 16 22 22 C 1.53321 * 108.41420 * 343.36776 * 21 18 17 23 23 C 1.53107 * 109.52725 * 50.15474 * 22 21 18 24 24 C 1.50836 * 127.70054 * 180.29285 * 17 16 15 25 25 C 1.52999 * 109.46935 * 294.81279 * 11 10 9 26 26 C 1.53000 * 109.47064 * 180.02562 * 25 11 10 27 27 C 1.53000 * 109.47331 * 59.99915 * 26 25 11 28 28 C 1.52998 * 109.47129 * 300.00449 * 27 26 25 29 29 C 1.53000 * 109.46915 * 174.81564 * 11 10 9 30 30 H 0.97001 * 120.00031 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00152 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46964 * 64.98114 * 10 9 7 33 33 H 1.08994 * 109.47053 * 304.97491 * 10 9 7 34 34 H 0.97003 * 119.99724 * 244.34538 * 12 11 10 35 35 H 1.07994 * 126.51069 * 359.97438 * 16 15 13 36 36 H 1.08994 * 109.68179 * 103.10334 * 21 18 17 37 37 H 1.09003 * 109.67325 * 223.64297 * 21 18 17 38 38 H 1.08996 * 109.45924 * 290.13711 * 22 21 18 39 39 H 1.08999 * 109.44771 * 170.16065 * 22 21 18 40 40 H 1.09006 * 109.47059 * 169.60030 * 23 22 21 41 41 H 1.08996 * 109.47917 * 49.58283 * 23 22 21 42 42 H 1.08995 * 109.68535 * 283.47116 * 24 17 16 43 43 H 1.09003 * 109.68235 * 44.03397 * 24 17 16 44 44 H 1.09000 * 109.47403 * 300.00120 * 25 11 10 45 45 H 1.09002 * 109.47583 * 59.99984 * 25 11 10 46 46 H 1.08998 * 109.47083 * 299.99425 * 26 25 11 47 47 H 1.09006 * 109.47357 * 180.02562 * 26 25 11 48 48 H 1.08998 * 109.47009 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.46882 * 60.00246 * 27 26 25 50 50 H 1.09003 * 109.46809 * 300.00131 * 28 27 26 51 51 H 1.08992 * 109.47052 * 180.02562 * 28 27 26 52 52 H 1.08997 * 109.47157 * 299.99861 * 29 11 10 53 53 H 1.09000 * 109.47220 * 60.00004 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0684 -4.8170 -0.1247 12 7 0.2333 -4.6206 -1.3122 13 6 0.7922 -4.6331 -2.5385 14 8 2.0011 -4.7086 -2.6555 15 6 -0.0568 -4.5554 -3.7321 16 6 0.3773 -4.5521 -5.0427 17 6 -0.7569 -4.4697 -5.8464 18 6 -1.8455 -4.4140 -5.0338 19 7 -1.4319 -4.4664 -3.7486 20 1 -2.0069 -4.4455 -2.9678 21 6 -3.2659 -4.3092 -5.5363 22 6 -3.2291 -3.8640 -7.0030 23 6 -2.2577 -4.7535 -7.7836 24 6 -0.8195 -4.4398 -7.3531 25 6 0.1807 -4.8667 1.1205 26 6 -0.8084 -6.0273 0.9957 27 6 -0.0377 -7.3426 0.8659 28 6 0.8500 -7.2929 -0.3792 29 6 1.8387 -6.1325 -0.2547 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6160 -3.7541 0.9318 33 1 2.7498 -3.6769 -0.8415 34 1 -0.7218 -4.4817 -1.2158 35 1 1.4017 -4.6057 -5.3804 36 1 -3.7550 -5.2802 -5.4597 37 1 -3.8116 -3.5750 -4.9436 38 1 -2.8976 -2.8272 -7.0596 39 1 -4.2266 -3.9504 -7.4336 40 1 -2.3674 -4.5619 -8.8511 41 1 -2.4784 -5.8008 -7.5777 42 1 -0.5362 -3.4507 -7.7128 43 1 -0.1419 -5.1884 -7.7637 44 1 0.8020 -5.0129 2.0041 45 1 -0.3681 -3.9295 1.2133 46 1 -1.4299 -5.8816 0.1121 47 1 -1.4412 -6.0625 1.8826 48 1 -0.7425 -8.1694 0.7774 49 1 0.5836 -7.4883 1.7495 50 1 0.2286 -7.1471 -1.2628 51 1 1.3987 -8.2300 -0.4719 52 1 2.4711 -6.0971 -1.1417 53 1 2.4600 -6.2786 0.6289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276238084.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:48 Heat of formation + Delta-G solvation = -30.267720 kcal Electronic energy + Delta-G solvation = -31975.211919 eV Core-core repulsion = 28038.197205 eV Total energy + Delta-G solvation = -3937.014714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.61116 -41.37089 -38.80667 -37.12950 -36.43408 -34.74038 -33.26065 -33.03662 -31.78699 -31.09452 -30.01648 -29.38513 -27.05730 -25.25065 -24.72135 -23.63766 -23.30900 -22.43486 -21.79004 -21.09990 -20.20365 -19.43171 -19.34439 -19.23315 -17.00518 -16.88560 -16.58774 -16.34335 -16.17332 -15.68212 -15.34105 -15.22872 -14.99702 -14.81202 -14.74456 -14.63834 -14.53488 -14.33316 -13.98654 -13.82619 -13.48741 -13.46925 -13.30253 -13.19900 -13.04031 -12.88950 -12.79660 -12.65608 -12.60033 -12.14137 -12.03404 -11.90636 -11.65440 -11.54051 -11.51963 -11.33418 -11.28154 -11.15287 -11.01942 -10.57536 -9.97843 -9.76111 -8.97962 -8.85809 -7.98593 -5.24078 0.50237 1.41022 1.43383 1.51245 1.71288 2.06018 2.21046 2.47728 2.52781 3.34852 3.61130 3.77890 3.78784 3.83893 3.95827 4.01149 4.06447 4.09578 4.21375 4.21638 4.41159 4.42749 4.47345 4.54276 4.57149 4.58687 4.70015 4.71563 4.75032 4.77781 4.82455 4.85882 4.98273 5.07552 5.09720 5.12470 5.14144 5.16375 5.20834 5.23216 5.27969 5.34061 5.34542 5.39620 5.42836 5.46826 5.48978 5.54308 5.69070 5.88606 5.96911 6.24493 6.48393 6.65994 7.28014 7.31934 8.06006 8.34744 9.24448 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007630 B = 0.004178 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3668.994802 B = 6700.151399 C = 9077.349700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.293 1.293 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.061 0.939 9 N -0.727 5.727 10 C 0.141 3.859 11 C 0.186 3.814 12 N -0.697 5.697 13 C 0.591 3.409 14 O -0.566 6.566 15 C -0.074 4.074 16 C -0.124 4.124 17 C -0.192 4.192 18 C 0.057 3.943 19 N -0.519 5.519 20 H 0.424 0.576 21 C -0.052 4.052 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.048 4.048 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.111 4.111 28 C -0.106 4.106 29 C -0.125 4.125 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.398 0.602 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.049 0.951 51 H 0.070 0.930 52 H 0.058 0.942 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -17.340 -9.052 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.220 1.220 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.079 0.921 9 N -0.370 5.370 10 C 0.013 3.987 11 C 0.100 3.900 12 N -0.347 5.347 13 C 0.380 3.620 14 O -0.446 6.446 15 C -0.187 4.187 16 C -0.151 4.151 17 C -0.198 4.198 18 C -0.062 4.062 19 N -0.115 5.115 20 H 0.263 0.737 21 C -0.089 4.089 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.086 4.086 25 C -0.151 4.151 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.143 4.143 29 C -0.163 4.163 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.233 0.767 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.088 0.912 52 H 0.077 0.923 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.502 -17.316 -8.902 22.122 hybrid contribution 0.234 1.614 0.586 1.732 sum -10.267 -15.703 -8.316 20.522 Atomic orbital electron populations 1.69764 1.06121 1.25861 1.59591 1.25389 0.96455 1.00429 1.03721 0.85238 0.77894 0.80043 0.77209 1.22020 1.21395 1.19823 1.19540 0.91090 0.85808 1.41184 0.92070 1.42238 1.05341 1.00301 1.89102 1.21175 0.94442 0.85802 0.97254 1.20461 0.90816 0.93869 0.84859 1.45646 1.11158 1.72979 1.04918 1.17185 0.86808 0.75508 0.82453 1.90730 1.15023 1.52186 1.86637 1.20337 0.83097 1.20256 0.95013 1.21106 0.99213 1.03962 0.90801 1.19575 0.91117 1.12237 0.96862 1.21068 0.97983 1.04721 0.82407 1.41658 1.05531 1.55907 1.08385 0.73709 1.20497 0.87562 1.03600 0.97291 1.21556 1.00960 0.99553 0.92989 1.21581 0.92920 1.00161 1.00409 1.20130 0.98568 1.01573 0.88293 1.21723 0.98114 0.99460 0.95841 1.21525 0.97173 0.93674 1.02522 1.21519 0.98546 0.97213 0.97598 1.21392 0.97299 0.97109 0.98549 1.21830 0.98562 0.93219 1.02720 0.94028 0.79054 0.96318 0.96667 0.76678 0.85158 0.88160 0.89632 0.92478 0.88662 0.89899 0.91296 0.91693 0.90948 0.90135 0.92692 0.91958 0.90099 0.90302 0.91272 0.93225 0.91161 0.92326 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.13 13.06 21.65 0.28 -58.84 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.97 48.35 29.55 68.60 2.03 50.38 16 4 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.24 -14.57 9.99 84.03 0.84 -13.73 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -38.65 5.19 -343.44 -1.78 -40.43 16 10 C 0.14 6.39 4.94 86.38 0.43 6.82 16 11 C 0.19 6.30 0.32 3.61 0.00 6.30 16 12 N -0.70 -23.16 3.48 -426.84 -1.49 -24.64 16 13 C 0.59 22.83 7.12 86.45 0.62 23.45 16 14 O -0.57 -26.07 13.18 -4.34 -0.06 -26.13 16 15 C -0.07 -2.52 7.06 40.37 0.28 -2.24 16 16 C -0.12 -4.17 10.62 22.47 0.24 -3.93 16 17 C -0.19 -5.17 5.91 -20.11 -0.12 -5.29 16 18 C 0.06 1.35 7.02 41.63 0.29 1.64 16 19 N -0.52 -13.38 5.98 -171.30 -1.03 -14.40 16 20 H 0.42 8.61 8.20 -92.71 -0.76 7.85 16 21 C -0.05 -0.77 6.30 30.06 0.19 -0.58 16 22 C -0.11 -1.49 5.89 30.74 0.18 -1.31 16 23 C -0.11 -1.58 5.90 30.75 0.18 -1.40 16 24 C -0.05 -0.97 6.28 30.01 0.19 -0.78 16 25 C -0.11 -3.25 4.64 30.59 0.14 -3.11 16 26 C -0.11 -2.28 5.75 30.59 0.18 -2.11 16 27 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 28 C -0.11 -2.46 5.76 30.58 0.18 -2.28 16 29 C -0.12 -3.76 4.45 30.58 0.14 -3.62 16 30 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.38 20.29 6.46 -92.71 -0.60 19.70 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.02 0.79 6.45 -2.39 -0.02 0.78 16 34 H 0.40 11.38 6.62 -92.71 -0.61 10.76 16 35 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.07 0.91 8.11 -2.39 -0.02 0.89 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.85 7.09 -2.39 -0.02 1.83 16 46 H 0.06 1.20 6.95 -2.39 -0.02 1.18 16 47 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.05 1.24 7.54 -2.39 -0.02 1.22 16 51 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.06 2.13 6.04 -2.39 -0.01 2.12 16 53 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -76.45 402.75 1.52 -74.93 By element: Atomic # 1 Polarization: 47.78 SS G_CDS: -1.04 Total: 46.74 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 4.60 Total: -7.59 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -4.01 Total: -138.32 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -76.45 1.52 -74.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276238084.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.663 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds