Wall clock time and date at job start Wed Apr 1 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 119.99885 * 2 1 4 4 H 1.48503 * 109.47353 * 269.99548 * 3 2 1 5 5 H 1.48498 * 109.47203 * 30.00182 * 3 2 1 6 6 H 1.48509 * 109.47149 * 149.99938 * 3 2 1 7 7 C 1.37872 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00279 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99896 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.46897 * 180.02562 * 9 7 2 11 11 C 1.46872 * 110.99484 * 190.00158 * 10 9 7 12 12 C 1.53219 * 109.40531 * 173.40520 * 11 10 9 13 13 C 1.52147 * 109.36084 * 57.72671 * 12 11 10 14 14 C 1.54336 * 110.58747 * 67.79889 * 13 12 11 15 15 C 1.54461 * 102.86220 * 83.54935 * 14 13 12 16 16 N 1.47085 * 107.30068 * 21.47030 * 15 14 13 17 17 C 1.34779 * 125.62304 * 180.95076 * 16 15 14 18 18 O 1.21279 * 119.99574 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00208 * 0.02562 * 17 16 15 20 20 C 1.52997 * 109.47055 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.47238 * 179.97438 * 20 19 17 22 22 C 1.34847 * 125.88966 * 274.69475 * 21 20 19 23 23 C 1.40899 * 107.41369 * 179.88085 * 22 21 20 24 24 C 1.34847 * 107.41585 * 0.38394 * 23 22 21 25 25 N 1.36340 * 125.88842 * 94.99883 * 21 20 19 26 26 H 0.97005 * 125.63705 * 359.96308 * 25 21 20 27 27 C 1.47588 * 108.74733 * 1.21122 * 16 15 14 28 28 C 1.52133 * 111.25104 * 304.48376 * 13 12 11 29 29 C 1.46849 * 111.00311 * 65.58260 * 10 9 7 30 30 H 0.97005 * 119.99779 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47010 * 59.99965 * 9 7 2 32 32 H 1.08998 * 109.46944 * 299.99469 * 9 7 2 33 33 H 1.08996 * 109.48907 * 53.42564 * 11 10 9 34 34 H 1.09000 * 109.49262 * 293.38406 * 11 10 9 35 35 H 1.09002 * 109.48577 * 297.76090 * 12 11 10 36 36 H 1.08992 * 109.49008 * 177.69276 * 12 11 10 37 37 H 1.09003 * 110.73590 * 325.20838 * 14 13 12 38 38 H 1.08998 * 110.73526 * 201.89777 * 14 13 12 39 39 H 1.08997 * 109.88111 * 262.03427 * 15 14 13 40 40 H 1.09007 * 109.87688 * 140.89082 * 15 14 13 41 41 H 1.09001 * 109.47328 * 60.00147 * 19 17 16 42 42 H 1.09004 * 109.47043 * 299.99957 * 19 17 16 43 43 H 1.09001 * 109.46832 * 59.99966 * 20 19 17 44 44 H 1.09000 * 109.47611 * 300.00263 * 20 19 17 45 45 H 1.08001 * 126.29426 * 0.02562 * 22 21 20 46 46 H 1.08004 * 126.28761 * 180.12400 * 23 22 21 47 47 H 1.08002 * 125.88786 * 179.73902 * 24 23 22 48 48 H 1.08993 * 110.37754 * 95.32930 * 27 16 15 49 49 H 1.09003 * 110.37353 * 217.67865 * 27 16 15 50 50 H 1.09001 * 109.48674 * 175.48255 * 28 13 12 51 51 H 1.09000 * 109.49451 * 295.54351 * 28 13 12 52 52 H 1.08997 * 109.48215 * 306.58120 * 29 10 9 53 53 H 1.09003 * 109.47612 * 66.61255 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5791 -0.0013 11 6 5.4497 -2.6254 0.2373 12 6 5.8936 -4.0837 0.3926 13 6 5.5115 -4.8630 -0.8570 14 6 6.3412 -4.3872 -2.0683 15 6 7.6529 -5.1898 -1.9232 16 7 7.3573 -6.3634 -1.0874 17 6 8.2467 -7.3042 -0.7126 18 8 7.8904 -8.2334 -0.0194 19 6 9.6836 -7.2016 -1.1548 20 6 10.4750 -8.3859 -0.5962 21 6 11.9119 -8.2836 -1.0390 22 6 12.4127 -8.7319 -2.2080 23 6 13.7897 -8.4335 -2.2189 24 6 14.0794 -7.8221 -1.0525 25 7 12.9308 -7.7271 -0.3241 26 1 12.8515 -7.3292 0.5570 27 6 5.9250 -6.3442 -0.7322 28 6 4.0230 -4.7434 -1.1478 29 6 3.6428 -3.2628 -1.2505 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6808 0.8905 32 1 3.8752 -0.6797 -0.8895 33 1 5.6860 -2.0747 1.1478 34 1 5.9719 -2.1744 -0.6064 35 1 5.4014 -4.5232 1.2601 36 1 6.9743 -4.1222 0.5289 37 1 6.5352 -3.3163 -2.0065 38 1 5.8378 -4.6359 -3.0025 39 1 8.4129 -4.5741 -1.4423 40 1 8.0007 -5.5120 -2.9048 41 1 10.1126 -6.2709 -0.7832 42 1 9.7305 -7.2140 -2.2437 43 1 10.0462 -9.3168 -0.9674 44 1 10.4281 -8.3732 0.4927 45 1 11.8595 -9.2263 -2.9928 46 1 14.4860 -8.6576 -3.0135 47 1 15.0535 -7.4688 -0.7477 48 1 5.3535 -6.9602 -1.4264 49 1 5.7830 -6.6925 0.2909 50 1 3.7951 -5.2435 -2.0891 51 1 3.4563 -5.2094 -0.3417 52 1 2.5695 -3.1739 -1.4186 53 1 4.1801 -2.8063 -2.0818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936806.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:32 Heat of formation + Delta-G solvation = -14.031092 kcal Electronic energy + Delta-G solvation = -30214.142717 eV Core-core repulsion = 26277.832076 eV Total energy + Delta-G solvation = -3936.310641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99254 -41.64026 -40.05561 -37.89149 -35.16017 -34.60698 -33.85356 -31.87042 -31.75563 -30.89653 -30.23122 -29.20343 -27.45444 -25.24736 -24.14241 -23.83953 -23.58835 -22.07573 -21.42760 -20.96829 -20.31518 -19.24666 -18.88695 -18.55186 -17.59856 -17.29183 -16.90453 -16.46161 -16.09953 -15.99937 -15.74463 -15.08061 -15.01021 -14.93204 -14.79526 -14.60750 -14.34607 -14.22044 -14.05985 -13.97149 -13.70471 -13.46911 -13.31703 -13.14946 -13.02635 -12.97431 -12.80983 -12.71930 -12.48455 -12.44188 -12.14453 -12.07576 -11.97479 -11.76199 -11.56427 -11.35868 -11.20730 -11.10153 -10.88157 -10.76832 -9.71891 -9.63854 -8.92389 -8.89560 -8.27195 -6.30398 1.34450 1.36004 1.36927 1.47437 1.61744 1.97548 2.16753 2.35021 2.54391 3.05552 3.20865 3.38468 3.56753 3.69209 3.73842 4.03250 4.07794 4.14131 4.22314 4.28245 4.31470 4.34807 4.41918 4.48527 4.55869 4.59316 4.61548 4.64988 4.70256 4.70660 4.75923 4.81229 4.82778 4.87774 4.96015 5.00411 5.01472 5.07635 5.11194 5.15009 5.19878 5.27558 5.29535 5.39608 5.39893 5.45677 5.48742 5.57087 6.03459 6.13192 6.26835 6.45633 6.53407 6.71861 6.76855 6.82253 7.13644 7.33419 8.89388 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.001851 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.927875 B =15121.967282 C =15715.069565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.515 4.515 8 H 0.036 0.964 9 C 0.173 3.827 10 N -0.548 5.548 11 C 0.054 3.946 12 C -0.086 4.086 13 C -0.061 4.061 14 C -0.122 4.122 15 C 0.103 3.897 16 N -0.615 5.615 17 C 0.523 3.477 18 O -0.589 6.589 19 C -0.117 4.117 20 C -0.028 4.028 21 C 0.009 3.991 22 C -0.215 4.215 23 C -0.226 4.226 24 C -0.012 4.012 25 N -0.553 5.553 26 H 0.424 0.576 27 C 0.120 3.880 28 C -0.091 4.091 29 C 0.070 3.930 30 H 0.266 0.734 31 H 0.027 0.973 32 H -0.012 1.012 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.135 0.865 46 H 0.142 0.858 47 H 0.190 0.810 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.084 0.916 51 H 0.056 0.944 52 H 0.049 0.951 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.566 -13.196 -5.870 32.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.272 5.272 11 C -0.073 4.073 12 C -0.124 4.124 13 C -0.062 4.062 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.349 5.349 17 C 0.313 3.687 18 O -0.469 6.469 19 C -0.156 4.156 20 C -0.067 4.067 21 C -0.104 4.104 22 C -0.240 4.240 23 C -0.251 4.251 24 C -0.144 4.144 25 N -0.149 5.149 26 H 0.262 0.738 27 C -0.003 4.003 28 C -0.130 4.130 29 C -0.058 4.058 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.005 0.995 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.153 0.847 46 H 0.160 0.840 47 H 0.207 0.793 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.103 0.897 51 H 0.075 0.925 52 H 0.068 0.932 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 29.071 -13.809 -4.959 32.564 hybrid contribution -0.365 1.354 -0.086 1.405 sum 28.706 -12.455 -5.045 31.696 Atomic orbital electron populations 1.70062 1.08161 1.28034 1.52719 1.25866 0.95599 1.03184 0.94464 0.85702 0.79425 0.78593 0.79115 1.19158 1.20936 1.17256 1.21288 0.91253 0.93137 1.49650 0.94524 1.19900 0.94069 0.86615 0.94861 1.61690 1.13220 1.16533 1.35806 1.22177 0.87462 0.97309 1.00378 1.21276 1.00604 0.93715 0.96813 1.21036 0.95252 0.93655 0.96250 1.22728 0.94680 1.00714 0.97887 1.22260 0.98164 0.85853 0.95578 1.48667 1.09322 1.25268 1.51594 1.20915 0.88372 0.80320 0.79045 1.90702 1.81157 1.34541 1.40545 1.21601 0.88908 1.01076 1.04063 1.19704 0.87498 0.98564 1.00903 1.20281 0.90528 1.05100 0.94456 1.20946 0.95772 1.08644 0.98596 1.21191 0.96336 1.07786 0.99770 1.22300 0.91634 1.06750 0.93697 1.42082 1.07412 1.47486 1.17942 0.73809 1.22147 0.81373 0.96109 1.00676 1.21354 0.94366 0.95103 1.02144 1.21892 0.99957 0.94192 0.89711 0.92519 0.95531 0.99480 0.91628 0.94230 0.92651 0.90200 0.89550 0.89463 0.89667 0.89021 0.87327 0.86847 0.90156 0.91182 0.84712 0.84039 0.79313 0.90992 0.92120 0.89726 0.92537 0.93239 0.94954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 2 C 0.01 0.34 5.47 84.65 0.46 0.81 16 3 Si 0.95 43.44 27.47 68.60 1.88 45.33 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 7 C -0.51 -29.51 8.97 25.60 0.23 -29.29 16 8 H 0.04 2.36 7.36 -2.91 -0.02 2.33 16 9 C 0.17 8.07 3.79 85.56 0.32 8.40 16 10 N -0.55 -21.54 4.63 -900.12 -4.16 -25.71 16 11 C 0.05 1.62 5.31 86.38 0.46 2.08 16 12 C -0.09 -2.10 4.87 30.39 0.15 -1.95 16 13 C -0.06 -1.33 0.55 -51.86 -0.03 -1.36 16 14 C -0.12 -1.99 5.02 31.54 0.16 -1.83 16 15 C 0.10 1.29 6.09 86.76 0.53 1.82 16 16 N -0.62 -11.33 3.32 -812.16 -2.70 -14.03 16 17 C 0.52 10.70 7.85 87.66 0.69 11.39 16 18 O -0.59 -17.25 16.25 -3.03 -0.05 -17.30 16 19 C -0.12 -1.49 4.87 29.85 0.15 -1.34 16 20 C -0.03 -0.41 5.04 29.85 0.15 -0.26 16 21 C 0.01 0.14 6.42 41.08 0.26 0.40 16 22 C -0.21 -3.45 10.77 22.14 0.24 -3.21 16 23 C -0.23 -3.27 10.86 22.14 0.24 -3.03 16 24 C -0.01 -0.14 11.94 83.21 0.99 0.86 16 25 N -0.55 -6.12 6.07 -182.77 -1.11 -7.23 16 26 H 0.42 2.59 8.96 -92.70 -0.83 1.76 16 27 C 0.12 2.60 5.83 86.61 0.51 3.11 16 28 C -0.09 -2.47 4.85 30.38 0.15 -2.32 16 29 C 0.07 2.49 5.15 86.38 0.45 2.94 16 30 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 31 H 0.03 1.25 7.04 -2.39 -0.02 1.23 16 32 H -0.01 -0.57 7.55 -2.39 -0.02 -0.58 16 33 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16 34 H 0.04 1.06 6.54 -2.39 -0.02 1.05 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.62 7.78 -2.39 -0.02 1.60 16 37 H 0.09 1.45 6.32 -2.39 -0.02 1.43 16 38 H 0.09 1.31 7.93 -2.39 -0.02 1.29 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 44 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 45 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 47 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 48 H 0.07 1.53 8.01 -2.39 -0.02 1.51 16 49 H 0.06 1.56 7.95 -2.39 -0.02 1.54 16 50 H 0.08 1.92 8.04 -2.39 -0.02 1.90 16 51 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.05 2.13 6.67 -2.39 -0.02 2.12 16 53 H 0.03 1.05 7.59 -2.39 -0.02 1.04 16 Total: -1.00 -75.13 409.38 0.27 -74.87 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.00 Total: 15.73 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 6.10 Total: -12.79 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -7.67 Total: -105.83 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.05 Total: -17.30 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Total: -75.13 0.27 -74.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936806.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.837 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds