Wall clock time and date at job start Wed Apr 1 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00225 * 2 1 4 4 C 1.50697 * 109.47152 * 293.94946 * 3 2 1 5 5 O 1.21281 * 119.99718 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00365 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00145 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47273 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.49452 * 54.93245 * 8 7 6 10 10 C 1.52765 * 109.56478 * 294.97064 * 8 7 6 11 11 N 1.46924 * 109.00737 * 185.55000 * 10 8 7 12 12 C 1.36939 * 120.63027 * 233.58208 * 11 10 8 13 13 H 1.07998 * 119.99697 * 151.63668 * 12 11 10 14 14 C 1.38812 * 119.99948 * 331.63476 * 12 11 10 15 15 N 1.31621 * 119.99722 * 343.21501 * 14 12 11 16 16 Si 1.86797 * 120.00136 * 163.21536 * 14 12 11 17 17 H 1.48497 * 109.47049 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47033 * 119.99925 * 16 14 12 19 19 H 1.48503 * 109.47061 * 240.00183 * 16 14 12 20 20 C 1.46928 * 118.73966 * 53.30621 * 11 10 8 21 21 C 1.53193 * 108.77558 * 306.64301 * 20 11 10 22 22 C 1.53033 * 109.50202 * 174.99893 * 8 7 6 23 23 F 1.39902 * 109.45971 * 61.29579 * 22 8 7 24 24 F 1.39899 * 109.46038 * 301.34289 * 22 8 7 25 25 C 1.46904 * 110.99764 * 123.95302 * 2 1 3 26 26 C 1.53780 * 113.61556 * 155.18059 * 25 2 1 27 27 C 1.53958 * 87.01992 * 220.04660 * 26 25 2 28 28 C 1.53779 * 113.61363 * 57.57243 * 25 2 1 29 29 H 1.09006 * 109.46376 * 60.00389 * 1 2 3 30 30 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47053 * 300.00253 * 1 2 3 32 32 H 1.09001 * 109.47376 * 173.95295 * 3 2 1 33 33 H 1.08998 * 109.47309 * 53.95205 * 3 2 1 34 34 H 0.96999 * 119.99764 * 359.97438 * 6 4 3 35 35 H 1.08999 * 109.47273 * 60.00148 * 7 6 4 36 36 H 1.08998 * 109.47288 * 300.00079 * 7 6 4 37 37 H 1.08996 * 109.51239 * 65.66325 * 10 8 7 38 38 H 1.09000 * 109.42508 * 305.38596 * 10 8 7 39 39 H 0.97006 * 119.99968 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.58390 * 66.42770 * 20 11 10 41 41 H 1.08994 * 109.58782 * 186.85301 * 20 11 10 42 42 H 1.08999 * 109.49860 * 174.58252 * 21 20 11 43 43 H 1.08999 * 109.49931 * 294.68648 * 21 20 11 44 44 H 1.08996 * 112.84994 * 286.38163 * 25 2 1 45 45 H 1.08995 * 113.61506 * 334.57011 * 26 25 2 46 46 H 1.08997 * 113.61243 * 105.47245 * 26 25 2 47 47 H 1.08994 * 113.53883 * 270.81089 * 27 26 25 48 48 H 1.09004 * 113.74022 * 139.94249 * 27 26 25 49 49 H 1.09002 * 113.61601 * 254.52936 * 28 25 2 50 50 H 1.09001 * 113.61575 * 25.35031 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2985 5 8 1.0049 1.4455 -2.1407 6 7 2.0191 3.3198 -1.5238 7 6 1.6702 3.9767 -2.7859 8 6 2.2187 5.4051 -2.7860 9 1 3.2904 5.3832 -2.5883 10 6 1.5195 6.2216 -1.7006 11 7 1.9568 7.6209 -1.7981 12 6 2.4683 8.2697 -0.7060 13 1 3.1810 9.0702 -0.8384 14 6 2.0706 7.8985 0.5711 15 7 0.9841 7.1745 0.7376 16 14 3.0774 8.4266 2.0533 17 1 4.2433 9.2269 1.6000 18 1 2.2335 9.2486 2.9574 19 1 3.5560 7.2236 2.7806 20 6 1.8405 8.3089 -3.0911 21 6 2.5413 7.4673 -4.1622 22 6 1.9639 6.0500 -4.1502 23 9 0.5866 6.1058 -4.3895 24 9 2.5795 5.2874 -5.1485 25 6 1.9954 -0.7660 1.1376 26 6 3.4101 -1.3219 0.9043 27 6 2.9357 -2.6046 1.6112 28 6 1.5108 -2.2249 1.1750 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.0798 1.3443 0.1083 33 1 1.5612 1.9273 0.8309 34 1 2.5244 3.8010 -0.8500 35 1 0.5859 4.0043 -2.8935 36 1 2.1038 3.4206 -3.6170 37 1 1.7819 5.8242 -0.7202 38 1 0.4403 6.1652 -1.8431 39 1 0.7060 6.9154 1.6301 40 1 0.7881 8.4262 -3.3492 41 1 2.3147 9.2883 -3.0278 42 1 2.3801 7.9174 -5.1417 43 1 3.6099 7.4265 -3.9514 44 1 1.8826 -0.2440 2.0878 45 1 3.6538 -1.4679 -0.1480 46 1 4.1860 -0.7837 1.4487 47 1 3.0814 -2.5857 2.6912 48 1 3.3037 -3.5214 1.1505 49 1 0.7555 -2.4148 1.9377 50 1 1.2328 -2.6179 0.1970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278742027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:08 Heat of formation + Delta-G solvation = -89.199801 kcal Electronic energy + Delta-G solvation = -31991.783906 eV Core-core repulsion = 27497.984176 eV Total energy + Delta-G solvation = -4493.799730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.53468 -46.48627 -39.96087 -38.90240 -37.35923 -35.20179 -34.51388 -32.80255 -31.30233 -29.84657 -28.51277 -26.53924 -25.51283 -25.34056 -25.01164 -22.76913 -22.31751 -21.26637 -20.20197 -19.52312 -19.48290 -17.43564 -16.91448 -16.81644 -16.42317 -16.14019 -15.68107 -15.42207 -15.33256 -15.14297 -14.96908 -14.41238 -14.16587 -13.87696 -13.68900 -13.41605 -13.25105 -13.08385 -12.85487 -12.81208 -12.72467 -12.51969 -12.25172 -12.01181 -11.78941 -11.72004 -11.68804 -11.68166 -11.41970 -11.24290 -11.02182 -10.90225 -10.72492 -10.58685 -10.53444 -10.42056 -10.09977 -9.95281 -9.79110 -9.47075 -8.78477 -8.67727 -8.37120 -6.93822 -5.99313 -3.43786 2.88032 3.18485 3.23387 3.33539 3.34997 3.97023 4.22807 4.33704 4.37831 4.50428 4.59293 4.65564 4.73892 4.75125 4.91860 4.94237 5.16158 5.21790 5.25110 5.30071 5.37010 5.43201 5.47447 5.53215 5.56622 5.59083 5.65877 5.69175 5.76433 5.82627 5.91721 5.99348 6.01962 6.04600 6.11113 6.22068 6.25516 6.36648 6.48194 6.66494 6.71201 6.85455 6.98269 7.04535 7.34304 7.61798 7.76488 8.21243 8.48780 8.97952 9.60020 10.16234 11.09491 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.003287 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.230179 B = 8516.693300 C =10597.253011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.512 5.512 3 C 0.035 3.965 4 C 0.515 3.485 5 O -0.530 6.530 6 N -0.721 5.721 7 C 0.131 3.869 8 C -0.164 4.164 9 H 0.098 0.902 10 C 0.180 3.820 11 N -0.592 5.592 12 C -0.258 4.258 13 H 0.070 0.930 14 C 0.006 3.994 15 N -0.899 5.899 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.288 1.288 20 C 0.144 3.856 21 C -0.171 4.171 22 C 0.300 3.700 23 F -0.199 7.199 24 F -0.213 7.213 25 C 0.050 3.950 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.128 4.128 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.020 0.980 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.405 0.595 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.032 0.968 39 H 0.255 0.745 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -12.454 -0.513 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.236 5.236 3 C -0.096 4.096 4 C 0.301 3.699 5 O -0.406 6.406 6 N -0.374 5.374 7 C 0.007 3.993 8 C -0.185 4.185 9 H 0.116 0.884 10 C 0.053 3.947 11 N -0.314 5.314 12 C -0.387 4.387 13 H 0.088 0.912 14 C -0.193 4.193 15 N -0.543 5.543 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.215 1.215 20 C 0.017 3.983 21 C -0.211 4.211 22 C 0.263 3.737 23 F -0.180 7.180 24 F -0.194 7.194 25 C -0.058 4.058 26 C -0.166 4.166 27 C -0.180 4.180 28 C -0.166 4.166 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.240 0.760 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.514 -13.154 -1.416 13.689 hybrid contribution 0.350 0.926 1.746 2.007 sum 3.864 -12.228 0.330 12.828 Atomic orbital electron populations 1.22536 0.86559 1.02188 1.01709 1.61947 1.08738 1.11506 1.41412 1.21950 1.02130 0.90129 0.95439 1.20399 0.79445 0.81316 0.88773 1.90648 1.39278 1.64187 1.46499 1.45913 1.57863 1.13532 1.20061 1.21208 1.00880 0.91250 0.85966 1.23108 1.04147 0.95454 0.95816 0.88415 1.20770 0.95248 0.82969 0.95706 1.44086 1.73777 1.07599 1.05894 1.19231 1.18435 1.16967 0.84102 0.91218 1.25086 0.96035 1.00235 0.97975 1.70041 1.21634 1.41010 1.21576 0.86221 0.79763 0.78027 0.82757 1.20129 1.21585 1.21458 1.20917 0.97320 0.94644 0.85419 1.23054 1.02686 0.92992 1.02360 1.21017 0.74601 0.92502 0.85588 1.92967 1.32632 1.97165 1.95269 1.92957 1.82981 1.78513 1.64959 1.23252 0.96796 0.93671 0.92117 1.23014 0.95543 0.96356 1.01704 1.22746 0.96787 0.98176 1.00297 1.22968 0.96741 0.94817 1.02075 0.89227 0.91500 0.96170 0.88000 0.91631 0.76022 0.90982 0.91435 0.88213 0.94947 0.93458 0.95069 0.91277 0.90422 0.89259 0.91686 0.89077 0.91699 0.90365 0.91142 0.91743 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.03 60.07 0.54 0.77 16 2 N -0.51 -6.45 4.46 -235.35 -1.05 -7.50 16 3 C 0.03 0.44 5.41 -4.98 -0.03 0.41 16 4 C 0.52 8.10 7.56 -10.99 -0.08 8.02 16 5 O -0.53 -10.02 14.31 5.56 0.08 -9.94 16 6 N -0.72 -11.12 5.33 -60.30 -0.32 -11.44 16 7 C 0.13 2.23 4.83 -4.04 -0.02 2.21 16 8 C -0.16 -2.89 2.02 -90.72 -0.18 -3.07 16 9 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 10 C 0.18 3.84 4.16 -3.93 -0.02 3.82 16 11 N -0.59 -13.46 3.00 -172.58 -0.52 -13.98 16 12 C -0.26 -6.43 9.58 -15.06 -0.14 -6.57 16 13 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 14 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 15 N -0.90 -23.84 11.20 55.49 0.62 -23.22 16 16 Si 0.90 19.90 29.59 -169.99 -5.03 14.88 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.14 2.77 6.32 -3.71 -0.02 2.75 16 21 C -0.17 -2.80 5.62 -26.61 -0.15 -2.95 16 22 C 0.30 5.26 1.63 -26.69 -0.04 5.22 16 23 F -0.20 -3.82 15.73 2.25 0.04 -3.78 16 24 F -0.21 -3.68 16.41 2.25 0.04 -3.64 16 25 C 0.05 0.51 3.18 -66.90 -0.21 0.30 16 26 C -0.13 -1.16 7.59 -25.83 -0.20 -1.36 16 27 C -0.14 -1.10 8.09 -25.82 -0.21 -1.31 16 28 C -0.13 -1.13 6.57 -25.92 -0.17 -1.30 16 29 H 0.09 1.37 5.88 -51.93 -0.31 1.06 16 30 H 0.07 0.75 7.00 -51.93 -0.36 0.39 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 1.10 7.85 -51.93 -0.41 0.69 16 33 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.40 5.80 7.69 -40.82 -0.31 5.49 16 35 H 0.07 1.34 7.97 -51.93 -0.41 0.93 16 36 H 0.07 1.16 7.63 -51.93 -0.40 0.76 16 37 H 0.10 2.28 5.26 -51.93 -0.27 2.01 16 38 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 41 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.87 7.97 -51.93 -0.41 0.45 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -28.84 394.62 -9.54 -38.38 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.32 Total: 7.31 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.02 Total: 6.99 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -1.27 Total: -56.14 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.07 Total: -7.42 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.84 -9.54 -38.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278742027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.816 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds