Wall clock time and date at job start Wed Apr 1 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00225 * 2 1 4 4 C 1.50697 * 109.47152 * 293.94946 * 3 2 1 5 5 O 1.21281 * 119.99718 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00365 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00145 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47273 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.49452 * 54.93245 * 8 7 6 10 10 C 1.52765 * 109.56478 * 294.97064 * 8 7 6 11 11 N 1.46924 * 109.00737 * 185.55000 * 10 8 7 12 12 C 1.36939 * 120.63027 * 233.58208 * 11 10 8 13 13 H 1.07998 * 119.99697 * 151.63668 * 12 11 10 14 14 C 1.38812 * 119.99948 * 331.63476 * 12 11 10 15 15 N 1.31621 * 119.99722 * 343.21501 * 14 12 11 16 16 Si 1.86797 * 120.00136 * 163.21536 * 14 12 11 17 17 H 1.48497 * 109.47049 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47033 * 119.99925 * 16 14 12 19 19 H 1.48503 * 109.47061 * 240.00183 * 16 14 12 20 20 C 1.46928 * 118.73966 * 53.30621 * 11 10 8 21 21 C 1.53193 * 108.77558 * 306.64301 * 20 11 10 22 22 C 1.53033 * 109.50202 * 174.99893 * 8 7 6 23 23 F 1.39902 * 109.45971 * 61.29579 * 22 8 7 24 24 F 1.39899 * 109.46038 * 301.34289 * 22 8 7 25 25 C 1.46904 * 110.99764 * 123.95302 * 2 1 3 26 26 C 1.53780 * 113.61556 * 155.18059 * 25 2 1 27 27 C 1.53958 * 87.01992 * 220.04660 * 26 25 2 28 28 C 1.53779 * 113.61363 * 57.57243 * 25 2 1 29 29 H 1.09006 * 109.46376 * 60.00389 * 1 2 3 30 30 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47053 * 300.00253 * 1 2 3 32 32 H 1.09001 * 109.47376 * 173.95295 * 3 2 1 33 33 H 1.08998 * 109.47309 * 53.95205 * 3 2 1 34 34 H 0.96999 * 119.99764 * 359.97438 * 6 4 3 35 35 H 1.08999 * 109.47273 * 60.00148 * 7 6 4 36 36 H 1.08998 * 109.47288 * 300.00079 * 7 6 4 37 37 H 1.08996 * 109.51239 * 65.66325 * 10 8 7 38 38 H 1.09000 * 109.42508 * 305.38596 * 10 8 7 39 39 H 0.97006 * 119.99968 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.58390 * 66.42770 * 20 11 10 41 41 H 1.08994 * 109.58782 * 186.85301 * 20 11 10 42 42 H 1.08999 * 109.49860 * 174.58252 * 21 20 11 43 43 H 1.08999 * 109.49931 * 294.68648 * 21 20 11 44 44 H 1.08996 * 112.84994 * 286.38163 * 25 2 1 45 45 H 1.08995 * 113.61506 * 334.57011 * 26 25 2 46 46 H 1.08997 * 113.61243 * 105.47245 * 26 25 2 47 47 H 1.08994 * 113.53883 * 270.81089 * 27 26 25 48 48 H 1.09004 * 113.74022 * 139.94249 * 27 26 25 49 49 H 1.09002 * 113.61601 * 254.52936 * 28 25 2 50 50 H 1.09001 * 113.61575 * 25.35031 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2985 5 8 1.0049 1.4455 -2.1407 6 7 2.0191 3.3198 -1.5238 7 6 1.6702 3.9767 -2.7859 8 6 2.2187 5.4051 -2.7860 9 1 3.2904 5.3832 -2.5883 10 6 1.5195 6.2216 -1.7006 11 7 1.9568 7.6209 -1.7981 12 6 2.4683 8.2697 -0.7060 13 1 3.1810 9.0702 -0.8384 14 6 2.0706 7.8985 0.5711 15 7 0.9841 7.1745 0.7376 16 14 3.0774 8.4266 2.0533 17 1 4.2433 9.2269 1.6000 18 1 2.2335 9.2486 2.9574 19 1 3.5560 7.2236 2.7806 20 6 1.8405 8.3089 -3.0911 21 6 2.5413 7.4673 -4.1622 22 6 1.9639 6.0500 -4.1502 23 9 0.5866 6.1058 -4.3895 24 9 2.5795 5.2874 -5.1485 25 6 1.9954 -0.7660 1.1376 26 6 3.4101 -1.3219 0.9043 27 6 2.9357 -2.6046 1.6112 28 6 1.5108 -2.2249 1.1750 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.0798 1.3443 0.1083 33 1 1.5612 1.9273 0.8309 34 1 2.5244 3.8010 -0.8500 35 1 0.5859 4.0043 -2.8935 36 1 2.1038 3.4206 -3.6170 37 1 1.7819 5.8242 -0.7202 38 1 0.4403 6.1652 -1.8431 39 1 0.7060 6.9154 1.6301 40 1 0.7881 8.4262 -3.3492 41 1 2.3147 9.2883 -3.0278 42 1 2.3801 7.9174 -5.1417 43 1 3.6099 7.4265 -3.9514 44 1 1.8826 -0.2440 2.0878 45 1 3.6538 -1.4679 -0.1480 46 1 4.1860 -0.7837 1.4487 47 1 3.0814 -2.5857 2.6912 48 1 3.3037 -3.5214 1.1505 49 1 0.7555 -2.4148 1.9377 50 1 1.2328 -2.6179 0.1970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278742027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:07 Heat of formation + Delta-G solvation = -106.428842 kcal Electronic energy + Delta-G solvation = -31992.531014 eV Core-core repulsion = 27497.984176 eV Total energy + Delta-G solvation = -4494.546838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.98704 -47.94375 -41.09091 -39.88497 -38.91975 -36.42628 -35.70115 -34.52636 -32.75998 -31.54441 -29.62983 -27.59029 -27.07899 -26.45288 -26.09409 -24.16549 -23.51875 -22.69456 -21.52912 -21.02013 -20.23751 -19.04072 -18.34983 -18.16438 -17.68873 -17.33548 -17.04365 -16.80441 -16.63276 -16.35873 -16.15443 -15.78124 -15.45062 -15.28018 -15.10295 -14.80844 -14.66450 -14.40802 -14.28215 -14.21471 -13.82769 -13.65960 -13.30749 -13.29380 -13.20884 -13.15258 -12.99221 -12.82948 -12.67805 -12.63584 -12.49505 -12.19949 -12.12420 -11.87211 -11.82154 -11.62816 -11.45728 -11.29655 -11.11776 -10.73918 -10.58829 -10.12902 -9.33847 -8.78594 -7.89958 -5.37011 1.49385 1.54374 1.61819 1.62970 1.97706 2.50648 2.80230 3.01063 3.15933 3.23869 3.32736 3.55481 3.58864 3.63754 3.75962 3.83509 3.95061 3.97438 4.04446 4.10440 4.24701 4.29373 4.32475 4.47523 4.50323 4.55457 4.56255 4.68424 4.69798 4.73627 4.87242 4.89711 4.95206 4.96582 5.04405 5.06399 5.10660 5.13723 5.26230 5.32586 5.36305 5.50037 5.58004 5.67343 5.87356 6.16098 6.34981 6.52015 7.09867 7.22702 7.76646 8.30147 9.17602 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.003287 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.230179 B = 8516.693300 C =10597.253011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.525 5.525 3 C 0.041 3.959 4 C 0.512 3.488 5 O -0.565 6.565 6 N -0.716 5.716 7 C 0.140 3.860 8 C -0.149 4.149 9 H 0.113 0.887 10 C 0.194 3.806 11 N -0.608 5.608 12 C -0.264 4.264 13 H 0.075 0.925 14 C -0.040 4.040 15 N -0.930 5.930 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.300 1.300 19 H -0.285 1.285 20 C 0.140 3.860 21 C -0.159 4.159 22 C 0.296 3.704 23 F -0.211 7.211 24 F -0.207 7.207 25 C 0.043 3.957 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.411 0.589 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.084 0.916 38 H -0.004 1.004 39 H 0.251 0.749 40 H 0.018 0.982 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.008 -12.785 -0.008 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.250 5.250 3 C -0.090 4.090 4 C 0.299 3.701 5 O -0.443 6.443 6 N -0.369 5.369 7 C 0.015 3.985 8 C -0.170 4.170 9 H 0.131 0.869 10 C 0.068 3.932 11 N -0.331 5.331 12 C -0.394 4.394 13 H 0.092 0.908 14 C -0.236 4.236 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.227 1.227 19 H -0.211 1.211 20 C 0.014 3.986 21 C -0.199 4.199 22 C 0.260 3.740 23 F -0.192 7.192 24 F -0.188 7.188 25 C -0.064 4.064 26 C -0.166 4.166 27 C -0.170 4.170 28 C -0.165 4.165 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.110 0.890 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.624 -13.477 -0.925 14.633 hybrid contribution -0.354 1.061 1.536 1.900 sum 5.271 -12.416 0.612 13.502 Atomic orbital electron populations 1.22418 0.87102 1.02597 1.00369 1.61954 1.08456 1.11532 1.43049 1.21950 1.03458 0.90150 0.93431 1.21019 0.78489 0.81041 0.89506 1.90634 1.40786 1.64962 1.47952 1.45888 1.57740 1.13617 1.19680 1.21005 0.99452 0.91120 0.86894 1.22894 1.04355 0.94905 0.94887 0.86895 1.20433 0.93389 0.83274 0.96138 1.44340 1.73759 1.08248 1.06708 1.19544 1.18121 1.16807 0.84895 0.90782 1.25746 0.96855 1.00763 1.00251 1.70185 1.23153 1.42536 1.21674 0.85266 0.78418 0.77508 0.79546 1.19114 1.22735 1.21141 1.21030 0.97141 0.95665 0.84782 1.22956 1.02891 0.91421 1.02595 1.21139 0.74139 0.93378 0.85383 1.92951 1.33741 1.97240 1.95308 1.92967 1.82765 1.78492 1.64610 1.23418 0.97685 0.93922 0.91405 1.22996 0.95092 0.97154 1.01308 1.22731 0.95474 0.97787 1.00992 1.22958 0.97850 0.93826 1.01906 0.92187 0.90240 0.95780 0.85786 0.90915 0.75231 0.93229 0.91203 0.89797 0.98598 0.93941 0.96401 0.90120 0.87643 0.87715 0.91094 0.90314 0.90718 0.89031 0.90437 0.90842 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.03 127.69 1.15 1.74 16 2 N -0.53 -12.94 4.46 -898.52 -4.00 -16.95 16 3 C 0.04 1.00 5.41 85.56 0.46 1.47 16 4 C 0.51 16.25 7.56 87.66 0.66 16.92 16 5 O -0.56 -21.94 14.31 -3.03 -0.04 -21.99 16 6 N -0.72 -22.20 5.33 -463.07 -2.47 -24.67 16 7 C 0.14 4.82 4.83 86.38 0.42 5.23 16 8 C -0.15 -5.19 2.02 -10.86 -0.02 -5.21 16 9 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 10 C 0.19 8.42 4.16 86.22 0.36 8.78 16 11 N -0.61 -27.49 3.00 -699.94 -2.10 -29.59 16 12 C -0.26 -12.98 9.58 84.03 0.81 -12.17 16 13 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 14 C -0.04 -2.01 4.92 84.86 0.42 -1.60 16 15 N -0.93 -50.07 11.20 21.65 0.24 -49.83 16 16 Si 0.96 40.57 29.59 68.60 2.03 42.60 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 18 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 20 C 0.14 5.24 6.32 86.36 0.55 5.78 16 21 C -0.16 -4.84 5.62 30.67 0.17 -4.66 16 22 C 0.30 10.05 1.63 30.62 0.05 10.10 16 23 F -0.21 -8.08 15.73 44.97 0.71 -7.37 16 24 F -0.21 -6.76 16.41 44.97 0.74 -6.02 16 25 C 0.04 0.82 3.18 45.44 0.14 0.96 16 26 C -0.13 -2.08 7.59 31.18 0.24 -1.84 16 27 C -0.13 -1.75 8.09 31.18 0.25 -1.50 16 28 C -0.13 -2.05 6.57 31.12 0.20 -1.85 16 29 H 0.06 1.91 5.88 -2.38 -0.01 1.89 16 30 H 0.08 1.78 7.00 -2.39 -0.02 1.76 16 31 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.12 2.47 7.85 -2.39 -0.02 2.45 16 33 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 34 H 0.41 11.68 7.69 -92.71 -0.71 10.97 16 35 H 0.05 1.93 7.97 -2.39 -0.02 1.91 16 36 H 0.07 2.38 7.63 -2.39 -0.02 2.37 16 37 H 0.08 3.91 5.26 -2.39 -0.01 3.90 16 38 H 0.00 -0.20 7.92 -2.39 -0.02 -0.22 16 39 H 0.25 13.17 8.31 -92.70 -0.77 12.40 16 40 H 0.02 0.72 7.92 -2.39 -0.02 0.70 16 41 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 42 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 47 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.08 1.47 7.97 -2.39 -0.02 1.45 16 Total: -1.00 -62.31 394.62 1.19 -61.12 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.23 Total: 30.54 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.86 Total: 22.15 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -8.33 Total: -121.03 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.04 Total: -21.99 kcal Atomic # 9 Polarization: -14.84 SS G_CDS: 1.45 Total: -13.39 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -62.31 1.19 -61.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278742027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.313 kcal (2) G-P(sol) polarization free energy of solvation -62.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds