Wall clock time and date at job start Wed Apr 1 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48061 * 111.16814 * 2 1 4 4 C 1.53989 * 107.14674 * 145.63133 * 3 2 1 5 5 C 1.54596 * 105.13700 * 358.92012 * 4 3 2 6 6 H 1.09001 * 110.72605 * 96.40198 * 5 4 3 7 7 C 1.53004 * 110.72272 * 219.68330 * 5 4 3 8 8 C 1.50701 * 109.47366 * 179.97438 * 7 5 4 9 9 O 1.21288 * 119.99485 * 0.02562 * 8 7 5 10 10 N 1.34773 * 120.00423 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00044 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46988 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.49685 * 304.93635 * 12 11 10 14 14 C 1.53195 * 109.49435 * 64.99887 * 12 11 10 15 15 N 1.46934 * 108.77289 * 174.58782 * 14 12 11 16 16 C 1.36940 * 120.63095 * 126.41517 * 15 14 12 17 17 H 1.07996 * 119.99607 * 331.82686 * 16 15 14 18 18 C 1.38809 * 120.00010 * 151.82575 * 16 15 14 19 19 N 1.31620 * 120.00225 * 343.06482 * 18 16 15 20 20 Si 1.86797 * 120.00083 * 163.06248 * 18 16 15 21 21 H 1.48502 * 109.47205 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47279 * 120.00273 * 20 18 16 23 23 H 1.48506 * 109.47312 * 240.00122 * 20 18 16 24 24 C 1.46924 * 118.73679 * 306.39172 * 15 14 12 25 25 C 1.53187 * 108.77611 * 53.60914 * 24 15 14 26 26 C 1.53037 * 109.49839 * 184.83714 * 12 11 10 27 27 F 1.39901 * 109.45815 * 298.70234 * 26 12 11 28 28 F 1.39891 * 109.45878 * 58.66494 * 26 12 11 29 29 C 1.48537 * 110.99804 * 117.39560 * 2 1 3 30 30 H 1.08995 * 109.46654 * 302.60777 * 1 2 3 31 31 H 1.09003 * 109.46742 * 62.60440 * 1 2 3 32 32 H 1.08995 * 109.47216 * 182.60102 * 1 2 3 33 33 H 1.09003 * 109.75493 * 26.31465 * 3 2 1 34 34 H 1.08998 * 109.99444 * 265.08352 * 3 2 1 35 35 H 1.09002 * 110.30778 * 240.00616 * 4 3 2 36 36 H 1.08995 * 110.31078 * 117.83389 * 4 3 2 37 37 H 1.08998 * 109.47293 * 299.95967 * 7 5 4 38 38 H 1.09007 * 109.46825 * 59.95741 * 7 5 4 39 39 H 0.97008 * 119.99544 * 359.97438 * 10 8 7 40 40 H 1.08995 * 109.47144 * 299.99286 * 11 10 8 41 41 H 1.08999 * 109.47479 * 60.00184 * 11 10 8 42 42 H 1.08997 * 109.58937 * 294.36772 * 14 12 11 43 43 H 1.08997 * 109.58819 * 54.65603 * 14 12 11 44 44 H 0.96996 * 120.00354 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.58315 * 173.39800 * 24 15 14 46 46 H 1.08999 * 109.58562 * 293.67795 * 24 15 14 47 47 H 1.08996 * 109.50258 * 65.31623 * 25 24 15 48 48 H 1.09001 * 109.49961 * 185.38257 * 25 24 15 49 49 H 1.09003 * 110.66567 * 81.84467 * 29 2 1 50 50 H 1.08998 * 110.66806 * 318.88265 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0037 1.3807 0.0000 4 6 3.3002 1.3655 0.8307 5 6 3.4491 -0.0934 1.3200 6 1 4.1134 -0.6548 0.6629 7 6 3.9542 -0.1314 2.7637 8 6 4.0883 -1.5641 3.2116 9 8 3.8079 -2.4660 2.4507 10 7 4.5197 -1.8431 4.4575 11 6 4.6505 -3.2359 4.8926 12 6 5.1556 -3.2738 6.3364 13 1 6.0835 -2.7070 6.4123 14 6 4.1026 -2.6573 7.2627 15 7 4.5445 -2.8188 8.6546 16 6 4.6235 -1.7378 9.4915 17 1 4.8128 -0.7545 9.0870 18 6 4.4601 -1.9058 10.8597 19 7 3.9093 -3.0063 11.3265 20 14 5.0220 -0.5701 12.0385 21 1 5.6049 0.5573 11.2675 22 1 3.8606 -0.0840 12.8257 23 1 6.0480 -1.1221 12.9594 24 6 4.8997 -4.1623 9.1317 25 6 5.9436 -4.7619 8.1844 26 6 5.4074 -4.7251 6.7515 27 9 4.2090 -5.4438 6.6838 28 9 6.3453 -5.3008 5.8879 29 6 2.0013 -0.6381 1.2312 30 1 -0.3632 0.5538 0.8657 31 1 -0.3633 0.4729 -0.9125 32 1 -0.3633 -1.0266 0.0466 33 1 1.2792 2.0563 0.4548 34 1 2.2201 1.6966 -1.0205 35 1 3.2130 2.0425 1.6805 36 1 4.1510 1.6447 0.2092 37 1 4.9256 0.3596 2.8218 38 1 3.2459 0.3869 3.4102 39 1 4.7443 -1.1217 5.0659 40 1 3.6796 -3.7275 4.8340 41 1 5.3596 -3.7534 4.2464 42 1 3.9916 -1.5971 7.0353 43 1 3.1481 -3.1636 7.1190 44 1 3.7949 -3.1236 12.2825 45 1 5.3146 -4.0951 10.1373 46 1 4.0103 -4.7924 9.1446 47 1 6.8643 -4.1815 8.2432 48 1 6.1452 -5.7939 8.4714 49 1 2.0041 -1.7235 1.1316 50 1 1.4219 -0.3346 2.1031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278747743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:15 Heat of formation + Delta-G solvation = -120.665826 kcal Electronic energy + Delta-G solvation = -31571.533292 eV Core-core repulsion = 27076.369092 eV Total energy + Delta-G solvation = -4495.164200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.54652 -46.49794 -40.11510 -38.75784 -37.36539 -35.01693 -33.58893 -32.71786 -31.04277 -30.32177 -29.96473 -27.65564 -25.87820 -25.25680 -24.62533 -22.50749 -21.59976 -21.28194 -20.74580 -20.08976 -19.55093 -17.54352 -16.92911 -16.82353 -16.45485 -16.05191 -15.74725 -15.59851 -15.43006 -15.07100 -14.92853 -14.55767 -14.15376 -13.88754 -13.78657 -13.56141 -13.32087 -13.23549 -13.08654 -12.91636 -12.81164 -12.44995 -12.31857 -12.22736 -11.71845 -11.67150 -11.62751 -11.61372 -11.53364 -11.44441 -11.27094 -11.01639 -10.87468 -10.74503 -10.65955 -10.54394 -10.11791 -9.95718 -9.88077 -9.61937 -9.00802 -8.65730 -8.65480 -6.93717 -5.97829 -3.42959 2.66271 3.12064 3.26099 3.34502 3.36112 3.80830 4.18028 4.33047 4.36334 4.40281 4.58815 4.63143 4.67324 4.83085 4.87624 4.91724 5.10205 5.15706 5.18229 5.20992 5.24441 5.28676 5.37756 5.39187 5.45969 5.49724 5.54923 5.61412 5.63107 5.65357 5.75233 5.89710 5.98055 6.03974 6.11672 6.12712 6.23744 6.29350 6.40011 6.42576 6.64788 6.65983 6.79921 7.06764 7.41699 7.51082 7.61350 8.22770 8.24416 8.98732 9.61211 10.16703 11.11289 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.002640 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.827916 B =10602.976628 C =12085.379605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.525 5.525 3 C 0.034 3.966 4 C -0.129 4.129 5 C -0.073 4.073 6 H 0.091 0.909 7 C -0.134 4.134 8 C 0.511 3.489 9 O -0.539 6.539 10 N -0.724 5.724 11 C 0.125 3.875 12 C -0.155 4.155 13 H 0.101 0.899 14 C 0.154 3.846 15 N -0.590 5.590 16 C -0.262 4.262 17 H 0.069 0.931 18 C 0.007 3.993 19 N -0.898 5.898 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.170 3.830 25 C -0.178 4.178 26 C 0.300 3.700 27 F -0.199 7.199 28 F -0.213 7.213 29 C 0.041 3.959 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.256 0.744 45 H 0.100 0.900 46 H 0.033 0.967 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.096 0.904 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 6.636 -16.565 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.249 5.249 3 C -0.094 4.094 4 C -0.167 4.167 5 C -0.093 4.093 6 H 0.110 0.890 7 C -0.174 4.174 8 C 0.297 3.703 9 O -0.416 6.416 10 N -0.377 5.377 11 C 0.001 3.999 12 C -0.176 4.176 13 H 0.119 0.881 14 C 0.026 3.974 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.214 1.214 24 C 0.044 3.956 25 C -0.218 4.218 26 C 0.263 3.737 27 F -0.180 7.180 28 F -0.194 7.194 29 C -0.086 4.086 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.238 0.762 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.118 0.882 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.114 0.886 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.069 5.638 -17.410 18.300 hybrid contribution 0.051 1.231 1.695 2.096 sum 0.120 6.869 -15.715 17.151 Atomic orbital electron populations 1.22502 0.87926 1.02205 1.00605 1.64757 1.08016 1.14675 1.37463 1.22900 0.95786 0.90178 1.00494 1.22501 0.97869 0.96656 0.99685 1.21794 0.97224 0.95647 0.94617 0.89022 1.21743 1.03900 0.94178 0.97620 1.20636 0.76655 0.91552 0.81462 1.90702 1.49298 1.48287 1.53274 1.45998 1.68073 1.08934 1.14655 1.21301 1.02144 0.82709 0.93746 1.22967 1.04177 0.94820 0.95683 0.88055 1.20898 0.92776 0.98493 0.85185 1.44100 1.75750 1.04802 1.06562 1.19180 1.43761 0.88265 0.87865 0.91291 1.25100 0.98661 0.97534 0.97994 1.70023 1.43960 1.27212 1.12978 0.86197 0.78165 0.81181 0.81016 1.20154 1.21585 1.21407 1.20836 0.93421 0.84742 0.96631 1.23265 1.03104 1.03137 0.92338 1.21026 0.74320 0.87391 0.90919 1.92967 1.47574 1.80360 1.97124 1.92955 1.66312 1.86907 1.73277 1.23364 0.93741 1.01200 0.90305 0.95470 0.91465 0.91180 0.93859 0.90464 0.91166 0.90750 0.88483 0.88753 0.76191 0.90770 0.91114 0.91680 0.95017 0.93340 0.88165 0.94935 0.89582 0.90538 0.88589 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.42 60.07 0.57 0.71 16 2 N -0.53 -5.48 5.56 -238.57 -1.33 -6.80 16 3 C 0.03 0.29 6.71 -2.67 -0.02 0.27 16 4 C -0.13 -0.98 6.51 -25.38 -0.17 -1.15 16 5 C -0.07 -0.71 2.66 -88.76 -0.24 -0.94 16 6 H 0.09 1.02 8.05 -51.93 -0.42 0.61 16 7 C -0.13 -1.18 5.09 -27.88 -0.14 -1.32 16 8 C 0.51 6.41 7.62 -10.99 -0.08 6.32 16 9 O -0.54 -8.71 14.55 5.55 0.08 -8.63 16 10 N -0.72 -8.87 5.33 -60.29 -0.32 -9.19 16 11 C 0.13 1.84 4.83 -4.04 -0.02 1.82 16 12 C -0.15 -2.47 2.03 -90.50 -0.18 -2.65 16 13 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.15 2.87 5.40 -3.70 -0.02 2.85 16 15 N -0.59 -13.42 2.99 -172.32 -0.52 -13.94 16 16 C -0.26 -6.52 9.58 -15.06 -0.14 -6.67 16 17 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 18 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 19 N -0.90 -24.53 11.20 55.49 0.62 -23.91 16 20 Si 0.90 20.22 29.59 -169.99 -5.03 15.19 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.17 3.76 5.10 -3.71 -0.02 3.75 16 25 C -0.18 -3.22 5.62 -26.61 -0.15 -3.37 16 26 C 0.30 5.25 1.63 -26.69 -0.04 5.20 16 27 F -0.20 -3.80 15.73 2.25 0.04 -3.76 16 28 F -0.21 -3.66 16.41 2.25 0.04 -3.63 16 29 C 0.04 0.46 5.29 -1.89 -0.01 0.45 16 30 H 0.03 0.23 8.00 -51.93 -0.42 -0.19 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.34 7.70 -51.93 -0.40 -0.06 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.72 8.10 -51.92 -0.42 0.30 16 39 H 0.40 4.15 7.70 -40.82 -0.31 3.83 16 40 H 0.07 1.20 7.97 -51.93 -0.41 0.79 16 41 H 0.07 1.09 7.63 -51.93 -0.40 0.69 16 42 H 0.06 1.12 7.13 -51.93 -0.37 0.74 16 43 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.10 2.46 6.06 -51.93 -0.31 2.15 16 46 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.10 1.29 7.10 -51.93 -0.37 0.92 16 50 H 0.04 0.45 7.87 -51.93 -0.41 0.04 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -29.65 393.39 -9.64 -39.29 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.40 Total: 4.09 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.75 Total: 5.36 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -1.54 Total: -53.84 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.07 Total: -7.39 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.65 -9.64 -39.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278747743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.376 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds