Wall clock time and date at job start Wed Apr 1 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99695 * 2 1 4 4 C 1.52997 * 109.47330 * 270.00026 * 3 2 1 5 5 C 1.52994 * 109.47128 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47241 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47279 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47167 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47330 * 179.97438 * 8 7 6 10 10 C 1.36932 * 119.99949 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00342 * 0.02562 * 10 9 8 12 12 C 1.38823 * 119.99848 * 180.02562 * 10 9 8 13 13 N 1.31616 * 119.99796 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99954 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47109 * 60.00166 * 14 12 10 16 16 H 1.48506 * 109.46844 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47424 * 300.00235 * 14 12 10 18 18 C 1.34773 * 120.00272 * 180.02562 * 2 1 3 19 19 O 1.21453 * 120.00302 * 174.42772 * 18 2 1 20 20 C 1.48636 * 119.99751 * 354.15256 * 18 2 1 21 21 N 1.33508 * 120.60694 * 353.94610 * 20 18 2 22 22 C 1.30807 * 122.65933 * 179.73242 * 21 20 18 23 23 N 1.34061 * 123.37702 * 0.53819 * 22 21 20 24 24 H 0.97001 * 120.21235 * 179.76741 * 23 22 21 25 25 C 1.36868 * 119.57171 * 359.75018 * 23 22 21 26 26 N 1.31630 * 135.96293 * 179.97438 * 25 23 22 27 27 C 1.33523 * 110.84178 * 180.02562 * 26 25 23 28 28 C 1.36078 * 110.92420 * 359.97438 * 27 26 25 29 29 C 1.39539 * 120.60305 * 174.21660 * 20 18 2 30 30 H 1.08994 * 109.46998 * 265.13952 * 1 2 3 31 31 H 1.09002 * 109.47185 * 25.14450 * 1 2 3 32 32 H 1.09002 * 109.46872 * 145.14149 * 1 2 3 33 33 H 1.09001 * 109.47250 * 30.00597 * 3 2 1 34 34 H 1.09007 * 109.46835 * 150.00424 * 3 2 1 35 35 H 1.09001 * 109.47421 * 300.00466 * 4 3 2 36 36 H 1.09003 * 109.46972 * 59.99900 * 4 3 2 37 37 H 1.08999 * 109.47270 * 299.99875 * 5 4 3 38 38 H 1.08996 * 109.47581 * 60.00367 * 5 4 3 39 39 H 1.09001 * 109.46708 * 299.99371 * 6 5 4 40 40 H 1.08997 * 109.47617 * 59.99709 * 6 5 4 41 41 H 1.09001 * 109.47030 * 299.99887 * 7 6 5 42 42 H 1.09000 * 109.46849 * 59.99630 * 7 6 5 43 43 H 1.09001 * 109.47421 * 300.00097 * 8 7 6 44 44 H 1.09003 * 109.46972 * 59.99531 * 8 7 6 45 45 H 0.97000 * 119.99832 * 0.02562 * 9 8 7 46 46 H 0.96998 * 120.00017 * 180.02562 * 13 12 10 47 47 H 1.07994 * 118.31374 * 180.30985 * 22 21 20 48 48 H 1.07999 * 124.53856 * 179.97438 * 27 26 25 49 49 H 1.08003 * 126.72198 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2179 3.0352 -1.4424 6 6 3.4724 3.4773 -2.8849 7 6 4.2385 4.8017 -2.8849 8 6 4.4934 5.2434 -4.3273 9 7 5.2264 6.5119 -4.3273 10 6 5.5693 7.1045 -5.5132 11 1 5.2990 6.6371 -6.4485 12 6 6.2643 8.3063 -5.5132 13 7 6.5941 8.8757 -4.3733 14 14 6.7314 9.1151 -7.1308 15 1 5.5019 9.4117 -7.9091 16 1 7.4630 10.3786 -6.8594 17 1 7.6010 8.1977 -7.9101 18 6 2.1390 -1.1671 -0.0005 19 8 3.3492 -1.1696 -0.1027 20 6 1.4016 -2.4511 0.1300 21 7 0.0880 -2.4593 0.3688 22 6 -0.6012 -3.5649 0.4859 23 7 -0.0578 -4.7866 0.3887 24 1 -0.6121 -5.5766 0.4865 25 6 1.2841 -4.9120 0.1501 26 7 2.1294 -5.9098 -0.0001 27 6 3.3658 -5.4560 -0.2193 28 6 3.3906 -4.0955 -0.2238 29 6 2.0706 -3.6698 0.0109 30 1 -0.3633 -0.0871 1.0239 31 1 -0.3634 0.9303 -0.4367 32 1 -0.3633 -0.8433 -0.5874 33 1 1.6084 2.0284 0.5139 34 1 3.1500 1.1384 0.5138 35 1 3.0415 0.9509 -1.9564 36 1 1.5000 1.8408 -1.9563 37 1 2.6292 3.7950 -0.9284 38 1 4.1704 2.9045 -0.9288 39 1 4.0610 2.7176 -3.3992 40 1 2.5198 3.6081 -3.3983 41 1 3.6503 5.5616 -2.3704 42 1 5.1911 4.6704 -2.3716 43 1 5.0818 4.4834 -4.8415 44 1 3.5410 5.3745 -4.8409 45 1 5.4695 6.9316 -3.4873 46 1 7.0794 9.7155 -4.3732 47 1 -1.6619 -3.4897 0.6740 48 1 4.2306 -6.0846 -0.3725 49 1 4.2546 -3.4658 -0.3766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316727916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:09 Heat of formation + Delta-G solvation = 75.291241 kcal Electronic energy + Delta-G solvation = -28359.324562 eV Core-core repulsion = 24323.346885 eV Total energy + Delta-G solvation = -4035.977677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46430 -40.18429 -39.17827 -36.84789 -35.93311 -35.58394 -34.17442 -32.06044 -31.03131 -30.19289 -29.51715 -27.64647 -27.06831 -25.62177 -24.18175 -23.86494 -22.50035 -21.60940 -20.92519 -20.68134 -20.19133 -18.98302 -18.45121 -17.35154 -16.94405 -16.64617 -16.50988 -16.47402 -15.64258 -15.50149 -15.09585 -14.59669 -14.30532 -13.98668 -13.69272 -13.61096 -13.46957 -13.33085 -13.27630 -12.90607 -12.81868 -12.76468 -12.55601 -12.25428 -12.10798 -11.41157 -11.41010 -11.11341 -10.93616 -10.80794 -10.65439 -10.61323 -10.42716 -10.31194 -10.17992 -10.04813 -9.93869 -9.60602 -9.19881 -8.93571 -8.79685 -8.38061 -6.84214 -5.69832 -2.97934 -0.82519 0.80186 1.60386 2.12023 2.39259 2.92181 3.07154 3.15351 3.48206 3.48635 3.52268 3.53901 3.92371 4.15621 4.35176 4.62895 4.65271 4.75213 4.81889 4.91653 4.99337 5.12014 5.19651 5.26727 5.40910 5.48665 5.54154 5.58768 5.60183 5.68054 5.77835 5.78571 5.84619 5.90101 6.02463 6.04899 6.07043 6.19383 6.25761 6.42704 6.43150 6.48314 6.50722 6.56653 6.78195 6.95068 6.98385 7.02554 7.43195 7.66216 7.75615 8.49673 9.60128 10.20270 10.55043 11.53298 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.001400 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.812665 B =19992.829379 C =20635.589016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.596 5.596 3 C 0.113 3.887 4 C -0.133 4.133 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.126 4.126 8 C 0.152 3.848 9 N -0.735 5.735 10 C -0.239 4.239 11 H 0.069 0.931 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.908 3.092 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.286 1.286 18 C 0.562 3.438 19 O -0.507 6.507 20 C 0.194 3.806 21 N -0.511 5.511 22 C 0.344 3.656 23 N -0.517 5.517 24 H 0.429 0.571 25 C 0.254 3.746 26 N -0.517 5.517 27 C 0.066 3.934 28 C -0.195 4.195 29 C -0.149 4.149 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.221 0.779 48 H 0.170 0.830 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.741 -30.747 15.937 40.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.328 5.328 3 C -0.008 4.008 4 C -0.172 4.172 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.164 4.164 8 C 0.024 3.976 9 N -0.379 5.379 10 C -0.370 4.370 11 H 0.087 0.913 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.739 3.261 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.213 1.213 18 C 0.347 3.653 19 O -0.381 6.381 20 C 0.059 3.941 21 N -0.233 5.233 22 C 0.062 3.938 23 N -0.121 5.121 24 H 0.268 0.732 25 C -0.001 4.001 26 N -0.237 5.237 27 C -0.076 4.076 28 C -0.219 4.219 29 C -0.162 4.162 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.237 0.763 48 H 0.187 0.813 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.524 -30.919 15.803 40.853 hybrid contribution 0.548 0.368 -0.687 0.952 sum -20.976 -30.551 15.117 40.023 Atomic orbital electron populations 1.22134 0.77954 1.02951 1.02774 1.47793 1.08086 1.05489 1.71400 1.21700 0.97674 0.83368 0.98099 1.21956 1.00954 0.98218 0.96075 1.21522 1.00266 0.95614 0.97957 1.21492 1.00350 0.97533 0.95736 1.21725 1.00010 0.96051 0.98577 1.20663 0.94615 0.88842 0.93468 1.42387 1.66990 1.22164 1.06347 1.19229 1.29094 1.02483 0.86225 0.91281 1.24747 1.01483 0.98102 0.96850 1.69654 1.45160 1.19623 1.23969 0.86249 0.78097 0.78663 0.83085 1.21313 1.21680 1.21300 1.17872 0.86594 0.82566 0.78311 1.90819 1.12895 1.86144 1.48215 1.21232 0.88738 0.93396 0.90700 1.68370 1.07774 1.25491 1.21662 1.24960 1.00098 0.78044 0.90741 1.41829 1.06879 1.11183 1.52171 0.73243 1.20562 0.84359 0.92666 1.02490 1.69552 1.00846 1.30087 1.23216 1.22749 0.93367 0.93459 0.98072 1.21653 0.95519 0.95908 1.08833 1.20871 0.96649 0.91303 1.07345 0.92037 0.91610 0.89196 0.89948 0.89639 0.91409 0.91857 0.91899 0.91705 0.92149 0.92246 0.92161 0.92104 0.96572 0.96622 0.78345 0.93533 0.76256 0.81319 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 9.14 59.85 0.55 1.01 16 2 N -0.60 -5.22 2.87 -182.39 -0.52 -5.74 16 3 C 0.11 1.00 5.34 -4.04 -0.02 0.98 16 4 C -0.13 -1.32 5.54 -26.74 -0.15 -1.47 16 5 C -0.12 -1.28 5.21 -26.73 -0.14 -1.42 16 6 C -0.11 -1.52 5.21 -26.73 -0.14 -1.66 16 7 C -0.13 -2.14 5.33 -26.73 -0.14 -2.29 16 8 C 0.15 3.26 6.26 -4.04 -0.03 3.24 16 9 N -0.73 -19.80 5.60 -59.91 -0.34 -20.14 16 10 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 11 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 12 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 13 N -0.94 -29.19 13.06 55.49 0.72 -28.47 16 14 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 C 0.56 6.23 7.67 -11.97 -0.09 6.14 16 19 O -0.51 -7.23 15.09 5.41 0.08 -7.14 16 20 C 0.19 1.79 6.62 -82.36 -0.55 1.25 16 21 N -0.51 -2.71 6.26 -10.67 -0.07 -2.78 16 22 C 0.34 0.50 12.24 -91.01 -1.11 -0.62 16 23 N -0.52 -1.53 5.32 -12.02 -0.06 -1.59 16 24 H 0.43 -0.29 8.93 -40.82 -0.36 -0.65 16 25 C 0.25 2.20 8.72 -154.20 -1.34 0.85 16 26 N -0.52 -5.51 11.16 -10.91 -0.12 -5.63 16 27 C 0.07 0.67 11.70 -17.59 -0.21 0.47 16 28 C -0.20 -2.21 10.26 -39.44 -0.40 -2.61 16 29 C -0.15 -1.58 6.19 -104.64 -0.65 -2.23 16 30 H 0.06 0.28 8.03 -51.93 -0.42 -0.13 16 31 H 0.07 0.30 8.04 -51.93 -0.42 -0.12 16 32 H 0.09 0.46 5.77 -51.93 -0.30 0.16 16 33 H 0.08 0.56 8.07 -51.93 -0.42 0.15 16 34 H 0.09 0.87 7.51 -51.93 -0.39 0.48 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 46 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.22 -0.98 8.06 -52.49 -0.42 -1.41 16 48 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 49 H 0.15 1.80 7.40 -52.48 -0.39 1.41 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -39.42 406.24 -11.50 -50.93 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.63 Total: 2.53 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -4.67 Total: -6.12 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.39 Total: -64.35 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.08 Total: -7.14 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -39.42 -11.50 -50.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316727916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.218 kcal (2) G-P(sol) polarization free energy of solvation -39.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds