Wall clock time and date at job start Wed Apr 1 2020 03:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86788 * 120.00025 * 2 1 4 4 H 1.48505 * 109.47264 * 269.99598 * 3 2 1 5 5 H 1.48501 * 109.47742 * 29.99827 * 3 2 1 6 6 H 1.48503 * 109.47267 * 149.99735 * 3 2 1 7 7 C 1.38819 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00147 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99515 * 180.02562 * 7 2 1 10 10 C 1.46510 * 119.99649 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47048 * 179.97438 * 10 9 7 12 12 C 1.38237 * 119.99525 * 89.99920 * 11 10 9 13 13 C 1.38236 * 119.99634 * 180.02562 * 12 11 10 14 14 C 1.38237 * 120.00126 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99984 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.46835 * 90.00091 * 15 14 13 17 17 C 1.34780 * 119.99566 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.52992 * 109.47482 * 179.97438 * 20 19 17 22 22 N 1.46901 * 109.47859 * 179.97438 * 21 20 19 23 23 C 1.48533 * 110.99670 * 52.60024 * 22 21 20 24 24 C 1.54936 * 103.22827 * 159.72645 * 23 22 21 25 25 C 1.54602 * 102.91755 * 322.58844 * 24 23 22 26 26 C 1.47895 * 111.00585 * 169.99973 * 22 21 20 27 27 C 1.38231 * 119.99816 * 0.25197 * 14 13 12 28 28 C 1.38232 * 120.00354 * 359.49006 * 27 14 13 29 29 H 0.96998 * 120.00152 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00660 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46668 * 59.99893 * 10 9 7 32 32 H 1.08992 * 109.47307 * 300.00151 * 10 9 7 33 33 H 1.07996 * 120.00689 * 0.02562 * 12 11 10 34 34 H 1.08000 * 120.00326 * 179.97438 * 13 12 11 35 35 H 1.09001 * 109.46980 * 329.99907 * 15 14 13 36 36 H 1.09002 * 109.47152 * 210.00007 * 15 14 13 37 37 H 0.96995 * 120.00423 * 359.97438 * 16 15 14 38 38 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 39 39 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 40 40 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 41 41 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 42 42 H 1.09002 * 109.47103 * 300.00247 * 21 20 19 43 43 H 1.09001 * 109.47066 * 60.00169 * 21 20 19 44 44 H 1.09002 * 110.67270 * 278.16471 * 23 22 21 45 45 H 1.08998 * 110.66667 * 41.29259 * 23 22 21 46 46 H 1.09002 * 110.72666 * 204.23420 * 24 23 22 47 47 H 1.08998 * 110.72369 * 80.94172 * 24 23 22 48 48 H 1.09001 * 110.30688 * 263.03605 * 25 24 23 49 49 H 1.08996 * 110.30747 * 140.87557 * 25 24 23 50 50 H 1.08994 * 109.91810 * 333.51090 * 26 22 21 51 51 H 1.08999 * 109.91451 * 94.60787 * 26 22 21 52 52 H 1.08007 * 119.99753 * 179.72933 * 27 14 13 53 53 H 1.07995 * 120.00414 * 180.23089 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5937 -2.1957 0.0020 12 6 6.2731 -2.0683 1.1991 13 6 7.6321 -1.8152 1.1989 14 6 8.3115 -1.6890 0.0016 15 6 9.7930 -1.4125 0.0014 16 7 10.5264 -2.6806 0.0020 17 6 11.8742 -2.6796 0.0024 18 8 12.4798 -1.6288 0.0019 19 6 12.6287 -3.9841 0.0024 20 6 14.1327 -3.7035 0.0023 21 6 14.8987 -5.0278 0.0030 22 7 16.3428 -4.7584 0.0023 23 6 16.7119 -3.8321 1.1032 24 6 18.2310 -4.0797 1.2804 25 6 18.3618 -5.6033 1.0533 26 6 17.1134 -5.9977 0.2426 27 6 7.6310 -1.8106 -1.1954 28 6 6.2730 -2.0690 -1.1953 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3622 0.0007 31 1 3.8490 -3.0431 -0.8875 32 1 3.8484 -3.0420 0.8924 33 1 5.7424 -2.1665 2.1345 34 1 8.1630 -1.7153 2.1341 35 1 10.0559 -0.8403 0.8912 36 1 10.0559 -0.8411 -0.8888 37 1 10.0421 -3.5210 0.0027 38 1 12.3655 -4.5561 0.8922 39 1 12.3661 -4.5558 -0.8878 40 1 14.3955 -3.1317 -0.8877 41 1 14.3957 -3.1316 0.8922 42 1 14.6357 -5.5992 0.8932 43 1 14.6359 -5.6000 -0.8868 44 1 16.5215 -2.7980 0.8160 45 1 16.1719 -4.0846 2.0157 46 1 18.5508 -3.8110 2.2873 47 1 18.8015 -3.5280 0.5333 48 1 18.3742 -6.1285 2.0083 49 1 19.2663 -5.8251 0.4870 50 1 16.5101 -6.7057 0.8107 51 1 17.4092 -6.4411 -0.7081 52 1 8.1610 -1.7076 -2.1308 53 1 5.7420 -2.1678 -2.1305 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319008382.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:35 Heat of formation + Delta-G solvation = -29.854567 kcal Electronic energy + Delta-G solvation = -28144.620606 eV Core-core repulsion = 24207.623808 eV Total energy + Delta-G solvation = -3936.996798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.02701 -40.29408 -39.78571 -37.10268 -35.83502 -35.30243 -33.87190 -32.42026 -31.87872 -31.71278 -29.83225 -28.87324 -27.10870 -25.61780 -23.91264 -23.64966 -23.32127 -21.78369 -21.76702 -21.52256 -20.99878 -19.87986 -18.34504 -17.31323 -17.12260 -16.91029 -16.80554 -16.66670 -16.45888 -16.42311 -15.81885 -15.50156 -15.41813 -14.94471 -14.81970 -14.60303 -14.36913 -14.27416 -14.08850 -13.94326 -13.81017 -13.41562 -13.28655 -13.20571 -13.16014 -12.86185 -12.71842 -12.36934 -12.24634 -12.20095 -12.10545 -11.96513 -11.93130 -11.92278 -11.78002 -11.62108 -11.41552 -11.04387 -10.99235 -10.12003 -9.84989 -9.67778 -9.36833 -9.34716 -8.05845 -5.39800 0.20480 0.47602 1.36375 1.38209 1.45910 1.66366 2.22018 2.45417 2.82948 3.07280 3.25790 3.62351 3.69155 3.76814 3.84415 3.86908 3.87610 4.00634 4.02196 4.06761 4.11932 4.20514 4.26326 4.34520 4.45776 4.52959 4.54278 4.61856 4.67719 4.68774 4.71414 4.74675 4.78933 4.87132 4.87725 4.91505 4.96497 5.04970 5.07108 5.12990 5.17577 5.23690 5.27884 5.32215 5.40586 5.43595 5.58169 5.72179 5.77297 5.94704 6.02943 6.11672 6.17957 6.56476 7.03692 7.26310 7.78767 7.98649 9.15468 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.036042 B = 0.001325 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.693560 B =21120.900182 C =21449.761522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.753 5.753 10 C 0.189 3.811 11 C -0.092 4.092 12 C -0.115 4.115 13 C -0.099 4.099 14 C -0.107 4.107 15 C 0.169 3.831 16 N -0.716 5.716 17 C 0.509 3.491 18 O -0.588 6.588 19 C -0.130 4.130 20 C -0.097 4.097 21 C 0.050 3.950 22 N -0.537 5.537 23 C 0.031 3.969 24 C -0.125 4.125 25 C -0.130 4.130 26 C 0.032 3.968 27 C -0.099 4.099 28 C -0.114 4.114 29 H 0.259 0.741 30 H 0.365 0.635 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.050 0.950 51 H 0.079 0.921 52 H 0.142 0.858 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.761 -13.903 1.930 41.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.399 5.399 10 C 0.064 3.936 11 C -0.093 4.093 12 C -0.133 4.133 13 C -0.117 4.117 14 C -0.108 4.108 15 C 0.046 3.954 16 N -0.368 5.368 17 C 0.297 3.703 18 O -0.468 6.468 19 C -0.170 4.170 20 C -0.136 4.136 21 C -0.078 4.078 22 N -0.261 5.261 23 C -0.097 4.097 24 C -0.163 4.163 25 C -0.168 4.168 26 C -0.095 4.095 27 C -0.117 4.117 28 C -0.132 4.132 29 H 0.068 0.932 30 H 0.198 0.802 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.252 0.748 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.068 0.932 51 H 0.098 0.902 52 H 0.160 0.840 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 39.089 -13.061 1.416 41.238 hybrid contribution -0.998 0.542 0.714 1.341 sum 38.092 -12.519 2.130 40.153 Atomic orbital electron populations 1.69871 1.07033 1.26764 1.59469 1.25442 0.96039 1.01045 1.02434 0.85450 0.78529 0.79896 0.78167 1.20368 1.21955 1.18149 1.19065 0.82466 0.93685 1.41650 0.92151 1.42709 1.02395 1.03744 1.91008 1.19725 0.86942 0.87754 0.99223 1.20153 0.95004 0.99747 0.94393 1.21216 0.94844 0.99602 0.97644 1.21205 0.93552 0.98547 0.98406 1.19823 0.94911 1.02648 0.93417 1.20026 0.86237 0.86451 1.02698 1.46057 1.06021 1.09828 1.74904 1.21299 0.82252 0.92163 0.74561 1.90708 1.69053 1.35550 1.51526 1.21640 0.94572 0.94020 1.06817 1.21269 0.92842 0.96986 1.02477 1.22312 0.87031 0.96590 1.01822 1.64782 1.06168 1.11352 1.43839 1.23248 0.96195 0.97619 0.92620 1.22505 0.95142 0.96369 1.02301 1.22409 0.98092 0.95907 1.00385 1.22927 0.94837 0.91550 1.00233 1.21213 0.93578 0.98485 0.98414 1.21220 0.94842 0.99540 0.97642 0.93211 0.80191 0.94619 0.94723 0.85723 0.84057 0.91100 0.91090 0.74818 0.86484 0.86286 0.92514 0.92593 0.93598 0.89632 0.90971 0.93587 0.90086 0.91201 0.90701 0.90399 0.93183 0.90242 0.84015 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.94 13.97 21.65 0.30 -62.64 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.95 45.99 27.73 68.60 1.90 47.89 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.26 -11.40 6.52 99.48 0.65 -10.76 16 7 C -0.24 -13.66 10.47 84.04 0.88 -12.78 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 9 N -0.75 -35.55 5.40 -347.16 -1.87 -37.42 16 10 C 0.19 7.15 6.38 85.63 0.55 7.70 16 11 C -0.09 -2.77 5.25 -19.87 -0.10 -2.88 16 12 C -0.11 -2.99 9.70 22.27 0.22 -2.78 16 13 C -0.10 -2.04 9.70 22.27 0.22 -1.82 16 14 C -0.11 -2.05 5.25 -19.87 -0.10 -2.16 16 15 C 0.17 2.94 5.80 85.63 0.50 3.44 16 16 N -0.72 -9.91 5.55 -466.78 -2.59 -12.50 16 17 C 0.51 8.59 7.83 87.66 0.69 9.27 16 18 O -0.59 -15.55 15.98 -3.03 -0.05 -15.59 16 19 C -0.13 -1.20 5.70 29.85 0.17 -1.03 16 20 C -0.10 -1.28 4.16 30.59 0.13 -1.15 16 21 C 0.05 0.52 5.03 86.30 0.43 0.96 16 22 N -0.54 -7.03 5.40 -883.07 -4.76 -11.80 16 23 C 0.03 0.39 5.10 86.65 0.44 0.83 16 24 C -0.13 -1.22 7.06 31.80 0.22 -1.00 16 25 C -0.13 -1.05 6.93 31.47 0.22 -0.84 16 26 C 0.03 0.32 6.69 86.45 0.58 0.90 16 27 C -0.10 -2.03 9.70 22.27 0.22 -1.82 16 28 C -0.11 -2.96 9.70 22.27 0.22 -2.74 16 29 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.37 16.78 5.52 -92.71 -0.51 16.27 16 31 H 0.04 1.35 8.09 -2.39 -0.02 1.34 16 32 H 0.03 1.32 8.09 -2.39 -0.02 1.30 16 33 H 0.12 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.07 1.32 8.09 -2.39 -0.02 1.31 16 36 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.42 3.79 8.46 -92.71 -0.78 3.01 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.06 0.90 6.75 -2.39 -0.02 0.89 16 42 H 0.05 0.39 7.81 -2.39 -0.02 0.37 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 1.08 7.67 -2.39 -0.02 1.06 16 45 H 0.05 0.55 8.00 -2.39 -0.02 0.53 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.05 0.42 7.57 -2.39 -0.02 0.41 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 53 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -74.54 426.68 -1.61 -76.15 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.46 Total: 26.75 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.93 Total: -10.85 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -8.93 Total: -124.36 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.05 Total: -15.59 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -74.54 -1.61 -76.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319008382.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.296 kcal (2) G-P(sol) polarization free energy of solvation -74.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds