Wall clock time and date at job start Wed Apr 1 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36742 * 127.13603 * 2 1 4 4 C 1.50703 * 126.34675 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46871 * 90.00002 * 4 3 2 6 6 C 1.53004 * 109.46804 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47052 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99675 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99770 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00129 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99700 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47208 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47202 * 119.99834 * 11 9 7 14 14 H 1.48497 * 109.46984 * 239.99591 * 11 9 7 15 15 N 1.30297 * 107.30703 * 180.02562 * 3 2 1 16 16 N 1.28533 * 110.05016 * 359.73062 * 15 3 2 17 17 C 1.31216 * 109.85961 * 0.44822 * 16 15 3 18 18 N 1.38579 * 126.47234 * 179.82287 * 17 16 15 19 19 C 1.46855 * 110.99364 * 297.65881 * 18 17 16 20 20 C 1.53038 * 109.51821 * 185.79883 * 19 18 17 21 21 C 1.53115 * 109.31255 * 300.88048 * 20 19 18 22 22 C 1.50706 * 109.52399 * 177.54375 * 21 20 19 23 23 C 1.41378 * 126.79932 * 274.70858 * 22 21 20 24 24 C 1.35455 * 103.98719 * 179.88582 * 23 22 21 25 25 O 1.34042 * 106.44260 * 0.37204 * 24 23 22 26 26 N 1.20925 * 111.56731 * 359.74549 * 25 24 23 27 27 C 1.53113 * 109.16219 * 57.63775 * 21 20 19 28 28 C 1.46847 * 110.99982 * 61.90477 * 18 17 16 29 29 H 1.09004 * 109.46544 * 274.70751 * 1 2 3 30 30 H 1.09000 * 109.47699 * 34.70436 * 1 2 3 31 31 H 1.09003 * 109.47353 * 154.71316 * 1 2 3 32 32 H 1.08999 * 109.46874 * 210.00079 * 4 3 2 33 33 H 1.08990 * 109.46871 * 329.99737 * 4 3 2 34 34 H 1.08999 * 109.47435 * 299.99734 * 5 4 3 35 35 H 1.09005 * 109.47153 * 60.00074 * 5 4 3 36 36 H 1.08999 * 109.46939 * 300.00076 * 6 5 4 37 37 H 1.08994 * 109.47373 * 59.99766 * 6 5 4 38 38 H 0.96996 * 119.99968 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.43159 * 65.80396 * 19 18 17 40 40 H 1.08994 * 109.49919 * 305.83495 * 19 18 17 41 41 H 1.09006 * 109.50170 * 180.91939 * 20 19 18 42 42 H 1.08998 * 109.50319 * 60.84501 * 20 19 18 43 43 H 1.09005 * 109.52378 * 297.66641 * 21 20 19 44 44 H 1.08010 * 128.00868 * 0.02606 * 23 22 21 45 45 H 1.07997 * 126.77905 * 180.09477 * 24 23 22 46 46 H 1.09007 * 109.50728 * 62.28416 * 27 21 20 47 47 H 1.09003 * 109.51023 * 182.36473 * 27 21 20 48 48 H 1.09004 * 109.46030 * 54.14723 * 28 18 17 49 49 H 1.08992 * 109.46572 * 294.17922 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8620 2.5350 -0.0005 5 6 1.7165 3.0242 1.4418 6 6 1.2822 4.4913 1.4412 7 6 1.1395 4.9735 2.8619 8 1 1.3391 4.3009 3.6830 9 6 0.7541 6.2732 3.1133 10 7 0.5115 7.0923 2.1134 11 14 0.5779 6.8711 4.8742 12 1 0.9062 5.7641 5.8080 13 1 1.5059 8.0069 5.1066 14 1 -0.8190 7.3174 5.1080 15 7 3.5162 0.6481 -0.0006 16 7 3.5212 -0.6372 0.0048 17 6 2.2888 -1.0877 -0.0006 18 7 1.8978 -2.4172 -0.0009 19 6 2.3657 -3.1030 -1.2122 20 6 1.7959 -4.5229 -1.2483 21 6 2.2512 -5.2832 0.0004 22 6 1.6437 -6.6623 -0.0002 23 6 0.3661 -7.0251 0.4844 24 6 0.2960 -8.3586 0.2566 25 8 1.4604 -8.7088 -0.3077 26 7 2.1935 -7.7565 -0.4418 27 6 1.7921 -4.5223 1.2473 28 6 2.3628 -3.1028 1.2116 29 1 -0.3632 0.0843 1.0243 30 1 -0.3634 0.8448 -0.5851 31 1 -0.3634 -0.9292 -0.4390 32 1 2.6122 3.1361 -0.5143 33 1 0.9058 2.6301 -0.5147 34 1 0.9664 2.4231 1.9555 35 1 2.6730 2.9290 1.9560 36 1 2.0326 5.0922 0.9276 37 1 0.3260 4.5870 0.9269 38 1 0.2401 8.0065 2.2903 39 1 3.4547 -3.1488 -1.2052 40 1 2.0311 -2.5549 -2.0929 41 1 2.1566 -5.0372 -2.1392 42 1 0.7071 -4.4777 -1.2700 43 1 3.3383 -5.3640 0.0015 44 1 -0.3820 -6.3865 0.9307 45 1 -0.5324 -9.0115 0.4884 46 1 0.7032 -4.4764 1.2653 47 1 2.1494 -5.0365 2.1396 48 1 2.0261 -2.5538 2.0910 49 1 3.4518 -3.1491 1.2076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338086875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:41 Heat of formation + Delta-G solvation = 130.714528 kcal Electronic energy + Delta-G solvation = -29471.816688 eV Core-core repulsion = 25438.242345 eV Total energy + Delta-G solvation = -4033.574343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.33851 -42.88591 -39.55920 -35.86509 -35.23988 -34.42703 -32.92697 -32.28293 -31.92298 -31.37680 -29.58113 -27.61305 -26.97006 -25.58079 -23.95601 -23.75884 -23.33653 -21.92789 -21.15768 -20.86004 -20.20078 -19.82907 -18.23970 -17.90281 -17.49358 -16.39962 -16.38585 -16.18521 -15.76908 -15.12698 -14.70721 -14.50781 -14.38836 -14.16054 -14.05523 -14.01749 -13.71868 -13.43178 -13.35849 -12.81651 -12.74769 -12.34242 -12.02917 -11.94502 -11.67498 -11.57670 -11.52564 -11.48576 -11.33089 -11.05550 -10.89861 -10.80840 -10.58838 -10.47559 -10.35355 -10.03819 -10.02758 -9.79438 -9.52787 -9.17715 -9.02094 -8.71688 -8.38496 -6.03487 -4.05690 1.09820 1.78589 1.82143 2.24470 2.86149 2.95524 3.29054 3.36946 3.41133 3.48897 3.60428 4.03968 4.34154 4.42860 4.44578 4.55465 4.64662 4.71141 4.72111 4.75397 4.93112 4.97138 5.00120 5.08397 5.09091 5.16592 5.22785 5.30092 5.32852 5.39222 5.39488 5.45731 5.50023 5.54988 5.63460 5.66549 5.82102 5.89332 5.92161 6.03118 6.11630 6.42960 6.59268 6.60608 6.73071 7.00782 7.20223 7.62212 7.75029 7.87060 7.95795 8.38225 8.86344 9.01040 9.58678 11.07774 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.001762 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.016051 B =15890.953913 C =16469.901787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.466 5.466 3 C 0.207 3.793 4 C -0.036 4.036 5 C -0.102 4.102 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.894 5.894 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 N -0.292 5.292 16 N -0.310 5.310 17 C 0.324 3.676 18 N -0.461 5.461 19 C 0.069 3.931 20 C -0.103 4.103 21 C -0.013 4.013 22 C 0.027 3.973 23 C -0.229 4.229 24 C -0.061 4.061 25 O 0.097 5.903 26 N -0.365 5.365 27 C -0.104 4.104 28 C 0.068 3.932 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.172 0.828 45 H 0.216 0.784 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -30.517 -6.649 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.158 5.158 3 C -0.060 4.060 4 C -0.076 4.076 5 C -0.141 4.141 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 N -0.133 5.133 16 N -0.154 5.154 17 C -0.033 4.033 18 N -0.187 5.187 19 C -0.059 4.059 20 C -0.142 4.142 21 C -0.032 4.032 22 C -0.132 4.132 23 C -0.250 4.250 24 C -0.142 4.142 25 O 0.030 5.970 26 N -0.068 5.068 27 C -0.143 4.143 28 C -0.060 4.060 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.189 0.811 45 H 0.232 0.768 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.413 -30.675 -7.253 31.613 hybrid contribution -1.698 0.737 1.411 2.328 sum -4.111 -29.938 -5.842 30.779 Atomic orbital electron populations 1.22037 0.75179 1.04780 1.04332 1.46228 1.08947 1.06013 1.54615 1.25383 0.86530 0.92220 1.01839 1.20384 1.02070 0.83584 1.01577 1.21646 1.01034 1.00080 0.91313 1.19110 0.96611 0.88470 0.97306 1.21257 1.45743 0.96397 0.92471 0.92679 1.25009 0.95460 0.96905 0.97029 1.69963 1.46929 1.05954 1.30536 0.86550 0.77650 0.78817 0.85079 1.19779 1.20941 1.21040 1.74077 1.17550 1.02257 1.19366 1.74529 1.17065 1.04261 1.19561 1.22117 0.86165 0.87873 1.07110 1.58538 1.59790 0.95868 1.04472 1.22118 0.99152 0.93708 0.90883 1.21621 1.02068 0.93578 0.96889 1.19636 1.00411 0.86573 0.96605 1.23590 0.93501 0.96059 1.00088 1.22757 0.98967 0.95678 1.07590 1.26057 0.91592 0.96976 0.99599 1.84853 1.21494 1.31306 1.59317 1.73877 1.17113 0.95674 1.20158 1.21646 1.02127 0.93621 0.96868 1.22126 0.99193 0.93744 0.90895 0.89970 0.89197 0.88879 0.88403 0.90320 0.93565 0.92452 0.96120 0.96459 0.93028 0.92563 0.90162 0.90553 0.90406 0.89209 0.81059 0.76754 0.90242 0.90368 0.89964 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.01 59.85 0.66 1.43 16 2 N -0.47 -6.44 3.21 -121.46 -0.39 -6.83 16 3 C 0.21 3.43 7.32 -154.01 -1.13 2.31 16 4 C -0.04 -0.60 5.59 -27.88 -0.16 -0.75 16 5 C -0.10 -2.03 5.14 -26.73 -0.14 -2.17 16 6 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.29 -5.51 12.18 32.99 0.40 -5.11 16 16 N -0.31 -5.38 12.19 30.31 0.37 -5.01 16 17 C 0.32 4.56 6.41 -318.88 -2.04 2.52 16 18 N -0.46 -4.82 4.65 -174.55 -0.81 -5.63 16 19 C 0.07 0.63 5.39 -3.83 -0.02 0.61 16 20 C -0.10 -0.74 5.36 -26.65 -0.14 -0.88 16 21 C -0.01 -0.09 2.72 -91.65 -0.25 -0.34 16 22 C 0.03 0.21 6.23 -82.10 -0.51 -0.30 16 23 C -0.23 -1.28 10.32 -39.38 -0.41 -1.68 16 24 C -0.06 -0.28 12.30 29.74 0.37 0.09 16 25 O 0.10 0.76 11.20 17.17 0.19 0.95 16 26 N -0.36 -3.52 12.07 33.42 0.40 -3.12 16 27 C -0.10 -0.70 5.03 -26.65 -0.13 -0.84 16 28 C 0.07 0.63 5.38 -3.83 -0.02 0.61 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.78 7.40 -51.93 -0.38 0.40 16 31 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.13 7.37 -51.93 -0.38 0.74 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.17 0.61 7.59 -52.48 -0.40 0.21 16 45 H 0.22 0.05 8.06 -52.49 -0.42 -0.37 16 46 H 0.08 0.47 7.37 -51.92 -0.38 0.09 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 403.24 15.07 6.08 6.08 Total: -1.00 -34.58 403.24 -10.37 -44.95 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -7.85 Total: -4.82 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -4.48 Total: -12.27 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.71 Total: -51.32 kcal Atomic # 8 Polarization: 0.76 SS G_CDS: 0.19 Total: 0.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.58 -10.37 -44.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338086875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.665 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds