Wall clock time and date at job start Wed Apr 1 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36742 * 127.13603 * 2 1 4 4 C 1.50703 * 126.34675 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46871 * 90.00002 * 4 3 2 6 6 C 1.53004 * 109.46804 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47052 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99675 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99770 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00129 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99700 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47208 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47202 * 119.99834 * 11 9 7 14 14 H 1.48497 * 109.46984 * 239.99591 * 11 9 7 15 15 N 1.30297 * 107.30703 * 180.02562 * 3 2 1 16 16 N 1.28533 * 110.05016 * 359.73062 * 15 3 2 17 17 C 1.31216 * 109.85961 * 0.44822 * 16 15 3 18 18 N 1.38579 * 126.47234 * 179.82287 * 17 16 15 19 19 C 1.46855 * 110.99364 * 297.65881 * 18 17 16 20 20 C 1.53038 * 109.51821 * 185.79883 * 19 18 17 21 21 C 1.53115 * 109.31255 * 300.88048 * 20 19 18 22 22 C 1.50706 * 109.52399 * 177.54375 * 21 20 19 23 23 C 1.41378 * 126.79932 * 274.70858 * 22 21 20 24 24 C 1.35455 * 103.98719 * 179.88582 * 23 22 21 25 25 O 1.34042 * 106.44260 * 0.37204 * 24 23 22 26 26 N 1.20925 * 111.56731 * 359.74549 * 25 24 23 27 27 C 1.53113 * 109.16219 * 57.63775 * 21 20 19 28 28 C 1.46847 * 110.99982 * 61.90477 * 18 17 16 29 29 H 1.09004 * 109.46544 * 274.70751 * 1 2 3 30 30 H 1.09000 * 109.47699 * 34.70436 * 1 2 3 31 31 H 1.09003 * 109.47353 * 154.71316 * 1 2 3 32 32 H 1.08999 * 109.46874 * 210.00079 * 4 3 2 33 33 H 1.08990 * 109.46871 * 329.99737 * 4 3 2 34 34 H 1.08999 * 109.47435 * 299.99734 * 5 4 3 35 35 H 1.09005 * 109.47153 * 60.00074 * 5 4 3 36 36 H 1.08999 * 109.46939 * 300.00076 * 6 5 4 37 37 H 1.08994 * 109.47373 * 59.99766 * 6 5 4 38 38 H 0.96996 * 119.99968 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.43159 * 65.80396 * 19 18 17 40 40 H 1.08994 * 109.49919 * 305.83495 * 19 18 17 41 41 H 1.09006 * 109.50170 * 180.91939 * 20 19 18 42 42 H 1.08998 * 109.50319 * 60.84501 * 20 19 18 43 43 H 1.09005 * 109.52378 * 297.66641 * 21 20 19 44 44 H 1.08010 * 128.00868 * 0.02606 * 23 22 21 45 45 H 1.07997 * 126.77905 * 180.09477 * 24 23 22 46 46 H 1.09007 * 109.50728 * 62.28416 * 27 21 20 47 47 H 1.09003 * 109.51023 * 182.36473 * 27 21 20 48 48 H 1.09004 * 109.46030 * 54.14723 * 28 18 17 49 49 H 1.08992 * 109.46572 * 294.17922 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8620 2.5350 -0.0005 5 6 1.7165 3.0242 1.4418 6 6 1.2822 4.4913 1.4412 7 6 1.1395 4.9735 2.8619 8 1 1.3391 4.3009 3.6830 9 6 0.7541 6.2732 3.1133 10 7 0.5115 7.0923 2.1134 11 14 0.5779 6.8711 4.8742 12 1 0.9062 5.7641 5.8080 13 1 1.5059 8.0069 5.1066 14 1 -0.8190 7.3174 5.1080 15 7 3.5162 0.6481 -0.0006 16 7 3.5212 -0.6372 0.0048 17 6 2.2888 -1.0877 -0.0006 18 7 1.8978 -2.4172 -0.0009 19 6 2.3657 -3.1030 -1.2122 20 6 1.7959 -4.5229 -1.2483 21 6 2.2512 -5.2832 0.0004 22 6 1.6437 -6.6623 -0.0002 23 6 0.3661 -7.0251 0.4844 24 6 0.2960 -8.3586 0.2566 25 8 1.4604 -8.7088 -0.3077 26 7 2.1935 -7.7565 -0.4418 27 6 1.7921 -4.5223 1.2473 28 6 2.3628 -3.1028 1.2116 29 1 -0.3632 0.0843 1.0243 30 1 -0.3634 0.8448 -0.5851 31 1 -0.3634 -0.9292 -0.4390 32 1 2.6122 3.1361 -0.5143 33 1 0.9058 2.6301 -0.5147 34 1 0.9664 2.4231 1.9555 35 1 2.6730 2.9290 1.9560 36 1 2.0326 5.0922 0.9276 37 1 0.3260 4.5870 0.9269 38 1 0.2401 8.0065 2.2903 39 1 3.4547 -3.1488 -1.2052 40 1 2.0311 -2.5549 -2.0929 41 1 2.1566 -5.0372 -2.1392 42 1 0.7071 -4.4777 -1.2700 43 1 3.3383 -5.3640 0.0015 44 1 -0.3820 -6.3865 0.9307 45 1 -0.5324 -9.0115 0.4884 46 1 0.7032 -4.4764 1.2653 47 1 2.1494 -5.0365 2.1396 48 1 2.0261 -2.5538 2.0910 49 1 3.4518 -3.1491 1.2076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338086875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:40 Heat of formation + Delta-G solvation = 111.978718 kcal Electronic energy + Delta-G solvation = -29472.629134 eV Core-core repulsion = 25438.242345 eV Total energy + Delta-G solvation = -4034.386789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.84505 -44.07327 -40.32312 -36.87640 -36.43803 -35.74551 -34.39426 -33.30196 -32.51346 -32.05645 -31.05045 -28.74062 -28.33154 -26.40273 -25.56088 -24.56791 -23.94408 -22.78206 -22.40955 -21.81211 -21.57884 -20.61988 -18.76939 -18.55715 -18.44044 -18.26145 -17.47258 -17.30915 -16.54392 -16.28635 -15.93671 -15.76962 -15.55388 -15.10459 -14.92819 -14.71193 -14.44735 -14.37473 -14.24727 -13.87046 -13.84649 -13.57688 -13.41687 -13.23508 -12.76285 -12.69677 -12.59628 -12.47479 -12.41056 -12.31218 -12.15791 -12.04137 -11.78996 -11.62336 -11.51128 -11.41105 -11.23303 -11.07833 -10.85063 -10.53701 -10.49694 -10.05079 -9.97571 -8.18936 -6.28746 0.63887 0.69124 1.20768 1.35747 1.39869 1.41529 1.53563 1.68727 2.41859 2.52775 2.59671 3.08027 3.14746 3.34250 3.50084 3.70803 3.77026 3.87122 3.93370 4.05511 4.09403 4.18581 4.25122 4.28592 4.34967 4.39616 4.41269 4.44745 4.50078 4.61240 4.67586 4.69186 4.72495 4.77426 4.77877 4.82657 4.91816 5.04679 5.05892 5.06719 5.09924 5.18480 5.23809 5.29162 5.50604 5.53928 5.62030 5.75598 5.86936 6.15812 6.26937 6.87331 7.40027 7.41884 7.63154 8.92558 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.001762 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.016051 B =15890.953913 C =16469.901787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.461 5.461 3 C 0.200 3.800 4 C -0.024 4.024 5 C -0.084 4.084 6 C 0.026 3.974 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.003 3.997 10 N -0.928 5.928 11 Si 0.959 3.041 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.275 1.275 15 N -0.331 5.331 16 N -0.347 5.347 17 C 0.339 3.661 18 N -0.448 5.448 19 C 0.071 3.929 20 C -0.090 4.090 21 C -0.010 4.010 22 C 0.016 3.984 23 C -0.236 4.236 24 C -0.047 4.047 25 O 0.081 5.919 26 N -0.405 5.405 27 C -0.090 4.090 28 C 0.067 3.933 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.039 0.961 36 H -0.004 1.004 37 H 0.008 0.992 38 H 0.264 0.736 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.195 0.805 45 H 0.258 0.742 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.115 -32.323 -5.818 33.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.153 5.153 3 C -0.069 4.069 4 C -0.063 4.063 5 C -0.123 4.123 6 C -0.011 4.011 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.195 4.195 10 N -0.569 5.569 11 Si 0.784 3.216 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.201 1.201 15 N -0.171 5.171 16 N -0.191 5.191 17 C -0.018 4.018 18 N -0.174 5.174 19 C -0.056 4.056 20 C -0.129 4.129 21 C -0.030 4.030 22 C -0.142 4.142 23 C -0.257 4.257 24 C -0.128 4.128 25 O 0.017 5.983 26 N -0.111 5.111 27 C -0.129 4.129 28 C -0.060 4.060 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.015 0.985 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.212 0.788 45 H 0.274 0.726 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.020 -32.504 -6.424 33.511 hybrid contribution -0.926 1.216 1.136 1.904 sum -5.945 -31.289 -5.288 32.284 Atomic orbital electron populations 1.22406 0.72550 1.06738 1.05336 1.46411 1.10355 1.04982 1.53540 1.25165 0.86595 0.92628 1.02520 1.20162 1.03321 0.83645 0.99222 1.21334 0.99994 0.97189 0.93756 1.18994 0.95396 0.91100 0.95584 1.21686 1.45699 0.96882 0.93846 0.92765 1.25878 0.95073 0.97131 1.01385 1.70072 1.47665 1.06379 1.32746 0.85484 0.77926 0.78269 0.79882 1.19049 1.20609 1.20064 1.73975 1.19237 1.03258 1.20628 1.74453 1.19177 1.03870 1.21637 1.22500 0.85538 0.89256 1.04539 1.58838 1.59020 0.94235 1.05344 1.22141 0.98292 0.94901 0.90305 1.21521 1.02638 0.91790 0.96921 1.19559 0.99536 0.86929 0.96938 1.23742 0.94578 0.95628 1.00275 1.23070 0.98404 0.96427 1.07835 1.26891 0.91090 0.97455 0.97320 1.84805 1.22597 1.31062 1.59833 1.73883 1.18635 0.96541 1.22043 1.21568 1.02993 0.91404 0.96890 1.22174 0.98358 0.95247 0.90181 0.89266 0.87921 0.86470 0.88923 0.87761 0.92719 0.94248 0.98536 0.97361 0.92755 0.94285 0.90131 0.90468 0.89010 0.90876 0.78789 0.72594 0.88384 0.89491 0.90376 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 11.01 127.77 1.41 2.59 16 2 N -0.46 -12.16 3.21 -538.18 -1.73 -13.88 16 3 C 0.20 6.56 7.32 137.64 1.01 7.56 16 4 C -0.02 -0.78 5.59 29.85 0.17 -0.61 16 5 C -0.08 -3.35 5.14 30.60 0.16 -3.19 16 6 C 0.03 1.33 4.97 29.85 0.15 1.48 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.00 0.19 5.46 84.66 0.46 0.66 16 10 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 11 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 N -0.33 -12.73 12.18 -49.53 -0.60 -13.33 16 16 N -0.35 -12.30 12.19 -58.01 -0.71 -13.01 16 17 C 0.34 9.36 6.41 260.11 1.67 11.03 16 18 N -0.45 -8.83 4.65 -706.15 -3.28 -12.11 16 19 C 0.07 1.25 5.39 86.32 0.46 1.71 16 20 C -0.09 -1.16 5.36 30.65 0.16 -0.99 16 21 C -0.01 -0.14 2.72 -11.46 -0.03 -0.17 16 22 C 0.02 0.23 6.23 43.58 0.27 0.50 16 23 C -0.24 -1.92 10.32 22.40 0.23 -1.69 16 24 C -0.05 -0.29 12.30 67.18 0.83 0.54 16 25 O 0.08 1.17 11.20 71.61 0.80 1.97 16 26 N -0.41 -7.57 12.07 -49.55 -0.60 -8.17 16 27 C -0.09 -1.04 5.03 30.65 0.15 -0.89 16 28 C 0.07 1.21 5.38 86.33 0.46 1.67 16 29 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.10 1.48 7.40 -2.39 -0.02 1.47 16 31 H 0.12 1.40 8.12 -2.39 -0.02 1.38 16 32 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.10 2.82 7.37 -2.39 -0.02 2.81 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 44 H 0.19 0.56 7.59 -2.91 -0.02 0.54 16 45 H 0.26 -1.00 8.06 -2.91 -0.02 -1.03 16 46 H 0.10 0.81 7.37 -2.38 -0.02 0.80 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 1.48 8.10 -2.38 -0.02 1.46 16 49 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -77.01 403.24 4.93 -72.08 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.94 Total: 5.41 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 7.80 Total: -9.99 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -6.63 Total: -115.32 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.80 Total: 1.97 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -77.01 4.93 -72.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338086875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.057 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds