Wall clock time and date at job start Wed Apr 1 2020 03:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36733 * 127.13882 * 2 1 4 4 C 1.50705 * 126.34792 * 359.96318 * 3 2 1 5 5 C 1.52995 * 109.47251 * 270.28990 * 4 3 2 6 6 C 1.52996 * 109.47125 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46906 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00226 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99841 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99601 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00091 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47109 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47066 * 120.00301 * 11 9 7 14 14 H 1.48500 * 109.47436 * 240.00427 * 11 9 7 15 15 N 1.30299 * 107.30633 * 180.22562 * 3 2 1 16 16 N 1.28527 * 110.05344 * 359.77553 * 15 3 2 17 17 C 1.31213 * 109.85810 * 359.97438 * 16 15 3 18 18 N 1.38585 * 126.47093 * 179.97438 * 17 16 15 19 19 C 1.47843 * 111.00110 * 120.87227 * 18 17 16 20 20 C 1.54906 * 104.79493 * 213.63653 * 19 18 17 21 21 C 1.55140 * 101.65375 * 37.06749 * 20 19 18 22 22 H 1.08998 * 110.85769 * 82.79965 * 21 20 19 23 23 C 1.53002 * 110.70895 * 205.96785 * 21 20 19 24 24 N 1.46505 * 109.46680 * 288.59641 * 23 21 20 25 25 C 1.35322 * 125.86508 * 124.71360 * 24 23 21 26 26 C 1.35354 * 106.17361 * 179.90689 * 25 24 23 27 27 N 1.33774 * 106.49128 * 0.35058 * 26 25 24 28 28 N 1.28631 * 108.89197 * 359.77741 * 27 26 25 29 29 C 1.47440 * 111.00148 * 0.02562 * 18 17 16 30 30 H 1.08997 * 109.46852 * 270.15034 * 1 2 3 31 31 H 1.08996 * 109.47175 * 30.15346 * 1 2 3 32 32 H 1.09004 * 109.47170 * 150.15394 * 1 2 3 33 33 H 1.09001 * 109.46712 * 30.28839 * 4 3 2 34 34 H 1.09003 * 109.47242 * 150.28634 * 4 3 2 35 35 H 1.09001 * 109.47140 * 299.99588 * 5 4 3 36 36 H 1.09003 * 109.47288 * 59.99672 * 5 4 3 37 37 H 1.09001 * 109.46825 * 299.99842 * 6 5 4 38 38 H 1.09003 * 109.47255 * 59.99713 * 6 5 4 39 39 H 0.97012 * 119.99247 * 179.97438 * 10 9 7 40 40 H 1.09005 * 110.37451 * 332.46138 * 19 18 17 41 41 H 1.08992 * 110.37732 * 94.80397 * 19 18 17 42 42 H 1.08996 * 110.98937 * 278.97551 * 20 19 18 43 43 H 1.08997 * 110.99281 * 155.15521 * 20 19 18 44 44 H 1.09000 * 109.47148 * 48.59220 * 23 21 20 45 45 H 1.08990 * 109.47494 * 168.60046 * 23 21 20 46 46 H 1.07997 * 126.90950 * 0.02562 * 25 24 23 47 47 H 1.07997 * 126.74920 * 180.13121 * 26 25 24 48 48 H 1.08993 * 109.88987 * 242.66795 * 29 18 17 49 49 H 1.09002 * 109.88828 * 3.85241 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8622 2.5349 -0.0008 5 6 1.7109 3.0212 -1.4435 6 6 1.2755 4.4879 -1.4442 7 6 1.1271 4.9671 -2.8653 8 1 1.3234 4.2929 -3.6858 9 6 0.7398 6.2661 -3.1179 10 7 0.5003 7.0869 -2.1187 11 14 0.5566 6.8603 -4.8793 12 1 0.8823 5.7516 -5.8122 13 1 -0.8415 7.3051 -5.1088 14 1 1.4828 7.9963 -5.1174 15 7 3.5162 0.6479 -0.0049 16 7 3.5212 -0.6373 -0.0032 17 6 2.2888 -1.0878 0.0034 18 7 1.8978 -2.4173 0.0066 19 6 1.0748 -2.7247 1.1957 20 6 1.4294 -4.1894 1.5543 21 6 2.9473 -4.2312 1.2360 22 1 3.5294 -3.8370 2.0689 23 6 3.3896 -5.6558 0.8957 24 7 3.3771 -6.4744 2.1107 25 6 2.7066 -7.6382 2.2757 26 6 2.9735 -8.0515 3.5367 27 7 3.7772 -7.1285 4.0767 28 7 3.9974 -6.2073 3.2064 29 6 3.0691 -3.3127 0.0020 30 1 -0.3633 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3634 -0.8914 -0.5115 33 1 0.9078 2.6311 0.5170 34 1 2.6144 3.1372 0.5088 35 1 2.6653 2.9250 -1.9613 36 1 0.9587 2.4190 -1.9530 37 1 0.3210 4.5837 -0.9266 38 1 2.0273 5.0905 -0.9346 39 1 0.2282 8.0010 -2.2965 40 1 1.3341 -2.0591 2.0190 41 1 0.0150 -2.6386 0.9563 42 1 0.8792 -4.8894 0.9257 43 1 1.2464 -4.3882 2.6102 44 1 2.7056 -6.0833 0.1626 45 1 4.3979 -5.6343 0.4825 46 1 2.0853 -8.1377 1.5472 47 1 2.6066 -8.9480 4.0141 48 1 3.0737 -3.9127 -0.9079 49 1 3.9851 -2.7253 0.0661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338238455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:28 Heat of formation + Delta-G solvation = 160.149167 kcal Electronic energy + Delta-G solvation = -29335.121780 eV Core-core repulsion = 25335.116569 eV Total energy + Delta-G solvation = -4000.005210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.16124 -44.06942 -40.43058 -36.82964 -36.42154 -35.72962 -34.44283 -33.17341 -31.90317 -31.21076 -30.58570 -28.52864 -28.37685 -27.38764 -25.58995 -23.87211 -23.55089 -23.04532 -22.45356 -21.82503 -21.63507 -21.03363 -18.74435 -18.58057 -18.34229 -17.55733 -17.35724 -17.20138 -16.54335 -16.22883 -15.88540 -15.72748 -15.44553 -15.28728 -15.01157 -14.67496 -14.43598 -14.29040 -14.04911 -13.95780 -13.87920 -13.48113 -13.32166 -13.27017 -12.83089 -12.70856 -12.63185 -12.54404 -12.46601 -12.41777 -12.20029 -11.89428 -11.74180 -11.69657 -11.52637 -11.39326 -11.24196 -11.16142 -11.00526 -10.74234 -10.54637 -10.27371 -9.34614 -8.19794 -6.29877 0.69293 0.74043 1.19548 1.39496 1.41124 1.51727 1.53344 1.69181 1.72038 2.41339 2.59261 3.13869 3.17878 3.29214 3.39098 3.45705 3.70779 3.72421 3.88677 4.00039 4.05936 4.13953 4.18197 4.26268 4.27179 4.32861 4.36724 4.40171 4.42879 4.44485 4.55559 4.60656 4.69110 4.75285 4.79397 4.81311 4.90829 5.02308 5.06096 5.07803 5.10623 5.16519 5.33368 5.38610 5.50453 5.52541 5.73856 5.74048 5.85571 6.09080 6.25831 6.86157 7.39057 7.59760 7.68366 8.91693 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.035481 B = 0.001632 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.962405 B =17157.173601 C =17181.011348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.478 5.478 3 C 0.193 3.807 4 C -0.023 4.023 5 C -0.084 4.084 6 C 0.027 3.973 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.004 3.996 10 N -0.929 5.929 11 Si 0.960 3.040 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.280 1.280 15 N -0.328 5.328 16 N -0.360 5.360 17 C 0.349 3.651 18 N -0.432 5.432 19 C 0.041 3.959 20 C -0.109 4.109 21 C -0.113 4.113 22 H 0.067 0.933 23 C 0.125 3.875 24 N -0.284 5.284 25 C -0.028 4.028 26 C -0.071 4.071 27 N -0.321 5.321 28 N -0.133 5.133 29 C 0.054 3.946 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.007 0.993 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.036 0.964 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.158 0.842 45 H 0.111 0.889 46 H 0.239 0.761 47 H 0.212 0.788 48 H 0.122 0.878 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 -34.271 6.476 35.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.172 5.172 3 C -0.076 4.076 4 C -0.062 4.062 5 C -0.123 4.123 6 C -0.011 4.011 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.194 4.194 10 N -0.569 5.569 11 Si 0.785 3.215 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.206 1.206 15 N -0.166 5.166 16 N -0.205 5.205 17 C -0.009 4.009 18 N -0.157 5.157 19 C -0.085 4.085 20 C -0.146 4.146 21 C -0.134 4.134 22 H 0.085 0.915 23 C 0.004 3.996 24 N -0.077 5.077 25 C -0.179 4.179 26 C -0.229 4.229 27 N -0.186 5.186 28 N -0.112 5.112 29 C -0.073 4.073 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.175 0.825 45 H 0.129 0.871 46 H 0.255 0.745 47 H 0.229 0.771 48 H 0.140 0.860 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.718 -33.178 6.777 33.971 hybrid contribution -1.354 0.495 -0.571 1.551 sum -4.072 -32.682 6.206 33.515 Atomic orbital electron populations 1.22491 0.72795 1.06775 1.05567 1.46201 1.10071 1.04712 1.56208 1.25066 0.86428 0.92529 1.03620 1.20121 1.03142 0.83841 0.99145 1.21341 0.99994 0.97175 0.93770 1.18993 0.95333 0.91116 0.95614 1.21691 1.45763 0.96954 0.93823 0.92735 1.25887 0.95010 0.97078 1.01458 1.70085 1.47659 1.06341 1.32812 0.85470 0.77943 0.78275 0.79788 1.19021 1.20036 1.20572 1.73902 1.19210 1.03253 1.20248 1.74321 1.17515 1.03471 1.25165 1.22977 0.86573 0.88828 1.02482 1.60567 1.20162 0.95178 1.39758 1.23343 0.99293 0.97407 0.88468 1.22782 0.93861 0.95337 1.02667 1.22539 0.98033 0.94565 0.98235 0.91461 1.22414 1.06895 0.88517 0.81729 1.47722 1.30509 1.17282 1.12223 1.24456 1.02803 0.89623 1.01061 1.24254 1.01669 1.02594 0.94424 1.75092 1.16843 1.02080 1.24581 1.78308 1.19344 1.22016 0.91517 1.22920 0.91374 0.93575 0.99441 0.88110 0.88479 0.86835 0.88006 0.89106 0.94231 0.92742 0.97428 0.98595 0.92748 0.94521 0.86457 0.86538 0.90806 0.82476 0.87087 0.74469 0.77080 0.85987 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 9.91 127.77 1.27 2.31 16 2 N -0.48 -12.51 3.21 -538.18 -1.73 -14.24 16 3 C 0.19 6.43 7.32 137.64 1.01 7.44 16 4 C -0.02 -0.76 5.43 29.85 0.16 -0.60 16 5 C -0.08 -3.40 5.13 30.59 0.16 -3.25 16 6 C 0.03 1.35 4.97 29.85 0.15 1.50 16 7 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.00 0.21 5.46 84.66 0.46 0.68 16 10 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 11 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 N -0.33 -12.74 12.18 -49.53 -0.60 -13.35 16 16 N -0.36 -12.61 10.47 -58.00 -0.61 -13.22 16 17 C 0.35 9.43 6.97 260.11 1.81 11.25 16 18 N -0.43 -7.59 5.22 -695.92 -3.63 -11.22 16 19 C 0.04 0.50 5.83 86.77 0.51 1.00 16 20 C -0.11 -0.82 6.44 31.98 0.21 -0.61 16 21 C -0.11 -1.18 3.01 -9.61 -0.03 -1.21 16 22 H 0.07 1.20 7.97 -2.39 -0.02 1.18 16 23 C 0.12 0.59 5.75 86.38 0.50 1.08 16 24 N -0.28 -3.09 3.36 -347.72 -1.17 -4.25 16 25 C -0.03 -0.16 11.57 83.49 0.97 0.80 16 26 C -0.07 -0.83 12.06 83.73 1.01 0.18 16 27 N -0.32 -6.98 12.41 -58.25 -0.72 -7.70 16 28 N -0.13 -2.78 12.81 37.02 0.47 -2.30 16 29 C 0.05 0.77 6.42 86.65 0.56 1.33 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.67 7.90 -2.39 -0.02 1.65 16 32 H 0.11 1.31 7.84 -2.39 -0.02 1.30 16 33 H 0.10 2.85 7.95 -2.39 -0.02 2.83 16 34 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 40 H 0.04 0.62 7.79 -2.38 -0.02 0.60 16 41 H 0.12 0.87 7.64 -2.39 -0.02 0.85 16 42 H 0.12 0.19 7.94 -2.39 -0.02 0.17 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.16 -0.64 7.92 -2.39 -0.02 -0.66 16 45 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.24 -1.18 8.06 -2.91 -0.02 -1.20 16 47 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 48 H 0.12 1.03 7.82 -2.39 -0.02 1.01 16 49 H 0.07 1.56 6.32 -2.39 -0.02 1.55 16 Total: -1.00 -85.98 403.59 4.23 -81.75 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 0.94 Total: 2.19 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 8.96 Total: -8.55 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -7.70 Total: -121.38 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -85.98 4.23 -81.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338238455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.898 kcal (2) G-P(sol) polarization free energy of solvation -85.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds