Wall clock time and date at job start Wed Apr 1 2020 03:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99980 * 2 1 4 4 C 1.50698 * 120.00062 * 180.02562 * 2 1 3 5 5 N 1.46898 * 109.47316 * 96.41291 * 4 2 1 6 6 C 1.46907 * 110.99759 * 288.00284 * 5 4 2 7 7 C 1.52997 * 109.46844 * 294.30318 * 6 5 4 8 8 C 1.38535 * 110.99913 * 164.05399 * 5 4 2 9 9 N 1.31248 * 126.38089 * 359.93638 * 8 5 4 10 10 N 1.28502 * 110.09772 * 180.02562 * 9 8 5 11 11 C 1.31233 * 109.96022 * 0.02562 * 10 9 8 12 12 C 1.47951 * 126.47524 * 179.97438 * 11 10 9 13 13 C 1.36707 * 126.93296 * 0.02562 * 12 11 10 14 14 N 1.35205 * 106.01684 * 179.97438 * 13 12 11 15 15 C 1.46498 * 125.72987 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47191 * 125.00068 * 15 14 13 17 17 C 1.50705 * 109.46860 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00412 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99868 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99946 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00087 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47241 * 60.00261 * 21 19 17 23 23 H 1.48501 * 109.46946 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46895 * 300.00204 * 21 19 17 25 25 N 1.28637 * 108.53745 * 359.97438 * 14 13 12 26 26 N 1.28615 * 110.54417 * 359.75984 * 25 14 13 27 27 N 1.36609 * 126.37501 * 179.97438 * 8 5 4 28 28 C 1.46496 * 127.17514 * 0.21210 * 27 8 5 29 29 H 1.07997 * 119.99890 * 185.15205 * 1 2 3 30 30 H 1.08003 * 120.00157 * 5.15345 * 1 2 3 31 31 H 1.09001 * 109.47633 * 270.00635 * 3 2 1 32 32 H 1.09005 * 109.46564 * 30.00396 * 3 2 1 33 33 H 1.08999 * 109.47233 * 150.00111 * 3 2 1 34 34 H 1.08994 * 109.46959 * 336.40678 * 4 2 1 35 35 H 1.09008 * 109.46903 * 216.40625 * 4 2 1 36 36 H 1.09002 * 109.46869 * 54.29889 * 6 5 4 37 37 H 1.08994 * 109.47326 * 174.29947 * 6 5 4 38 38 H 1.09004 * 109.47395 * 304.68673 * 7 6 5 39 39 H 1.08991 * 109.47549 * 64.68977 * 7 6 5 40 40 H 1.08998 * 109.47057 * 184.69229 * 7 6 5 41 41 H 1.08002 * 126.99266 * 359.96994 * 13 12 11 42 42 H 1.09011 * 109.47042 * 244.99570 * 15 14 13 43 43 H 1.08993 * 109.47340 * 4.99593 * 15 14 13 44 44 H 1.08998 * 109.47064 * 299.99185 * 16 15 14 45 45 H 1.08993 * 109.47366 * 59.99542 * 16 15 14 46 46 H 0.96998 * 120.00129 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.46656 * 269.70678 * 28 27 8 48 48 H 1.08994 * 109.47632 * 29.70770 * 28 27 8 49 49 H 1.09004 * 109.47275 * 149.71074 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4423 -1.6512 -1.3770 6 6 1.2694 -2.0692 -2.1565 7 6 0.7157 -3.3755 -1.5839 8 6 3.4223 -2.6303 -1.3909 9 7 3.9688 -3.1997 -0.3422 10 7 4.8431 -4.0646 -0.7148 11 6 4.9084 -4.0997 -2.0251 12 6 5.7923 -4.9632 -2.8388 13 6 6.6976 -5.8781 -2.3782 14 7 7.2685 -6.4233 -3.4759 15 6 8.3046 -7.4590 -3.4763 16 6 7.8395 -8.6453 -4.3233 17 6 8.9056 -9.7104 -4.3242 18 1 9.8233 -9.5565 -3.7760 19 6 8.7094 -10.8815 -5.0250 20 7 7.5922 -11.0688 -5.6930 21 14 10.0306 -12.2021 -5.0257 22 1 10.2789 -12.6546 -3.6333 23 1 9.5792 -13.3534 -5.8478 24 1 11.2843 -11.6477 -5.5970 25 7 6.7483 -5.8805 -4.5197 26 7 5.8626 -5.0111 -4.1825 27 7 4.0002 -3.1825 -2.4988 28 6 3.7160 -2.8602 -3.8993 29 1 -0.5400 -0.9315 0.0840 30 1 -0.5400 0.9315 -0.0840 31 1 2.2451 1.6199 -1.0276 32 1 1.4743 2.0647 0.5139 33 1 3.0159 1.1748 0.5138 34 1 1.4296 -2.0907 0.4104 35 1 2.9615 -1.2064 0.6094 36 1 0.5033 -1.2957 -2.1033 37 1 1.5596 -2.2223 -3.1959 38 1 1.5062 -4.1257 -1.5601 39 1 0.3488 -3.2022 -0.5724 40 1 -0.1022 -3.7295 -2.2114 41 1 6.9130 -6.1169 -1.3471 42 1 9.2250 -7.0520 -3.8955 43 1 8.4866 -7.7913 -2.4544 44 1 6.9193 -9.0523 -3.9042 45 1 7.6574 -8.3130 -5.3452 46 1 7.4543 -11.8925 -6.1863 47 1 2.9205 -3.5084 -4.2670 48 1 3.4013 -1.8195 -3.9760 49 1 4.6146 -3.0130 -4.4969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338514403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:49 Heat of formation + Delta-G solvation = 186.770445 kcal Electronic energy + Delta-G solvation = -29684.937153 eV Core-core repulsion = 25686.086328 eV Total energy + Delta-G solvation = -3998.850825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.43922 -43.95526 -39.79104 -36.89399 -36.30029 -35.52993 -34.78972 -33.24788 -31.89368 -31.73492 -29.71530 -28.62564 -28.14227 -27.46471 -27.10511 -25.05270 -24.35375 -23.94218 -22.48158 -21.84902 -21.34575 -19.23869 -19.00565 -18.42209 -17.98232 -17.69255 -17.38088 -17.10184 -16.64262 -16.50506 -16.22534 -15.58650 -15.46558 -15.29191 -15.09721 -14.61331 -14.40395 -14.33643 -14.28559 -13.87904 -13.73239 -13.65827 -13.09846 -13.06232 -12.93749 -12.73768 -12.72051 -12.66098 -12.48949 -12.40187 -12.22513 -12.11195 -11.99699 -11.87877 -11.63475 -11.51532 -11.42638 -11.27787 -10.98522 -10.60783 -10.39176 -9.96744 -9.17120 -8.25277 -6.38952 0.09161 0.65277 0.85760 1.25164 1.31078 1.43742 1.46476 1.50549 1.54788 2.00107 2.40336 2.56142 2.78520 3.10612 3.46620 3.58965 3.68018 3.76516 3.89413 3.89837 3.98620 4.02717 4.15369 4.22321 4.24321 4.26003 4.33783 4.50761 4.53430 4.56834 4.60735 4.68456 4.75773 4.79974 4.80746 4.83451 4.90653 4.94826 5.03395 5.13204 5.20641 5.28181 5.29628 5.44298 5.48715 5.54445 5.70273 5.74720 5.95150 6.03529 6.04883 6.77161 7.29505 7.32411 7.54009 8.86865 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.001830 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.959771 B =15298.128687 C =15452.725564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.128 4.128 3 C -0.113 4.113 4 C 0.100 3.900 5 N -0.439 5.439 6 C 0.040 3.960 7 C -0.184 4.184 8 C 0.378 3.622 9 N -0.346 5.346 10 N -0.284 5.284 11 C 0.259 3.741 12 C 0.020 3.980 13 C 0.015 3.985 14 N -0.271 5.271 15 C 0.122 3.878 16 C 0.022 3.978 17 C -0.543 4.543 18 H 0.082 0.918 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.290 1.290 24 H -0.264 1.264 25 N -0.098 5.098 26 N -0.274 5.274 27 N -0.469 5.469 28 C 0.072 3.928 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.023 0.977 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.230 0.770 42 H 0.110 0.890 43 H 0.134 0.866 44 H -0.007 1.007 45 H 0.002 0.998 46 H 0.264 0.736 47 H 0.091 0.909 48 H 0.116 0.884 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 23.547 10.010 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.128 4.128 3 C -0.170 4.170 4 C -0.026 4.026 5 N -0.162 5.162 6 C -0.086 4.086 7 C -0.243 4.243 8 C 0.021 3.979 9 N -0.192 5.192 10 N -0.126 5.126 11 C -0.009 4.009 12 C -0.120 4.120 13 C -0.141 4.141 14 N -0.062 5.062 15 C 0.004 3.996 16 C -0.016 4.016 17 C -0.581 4.581 18 H 0.100 0.900 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.216 1.216 24 H -0.189 1.189 25 N -0.078 5.078 26 N -0.142 5.142 27 N -0.163 5.163 28 C -0.069 4.069 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.012 0.988 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.134 0.866 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.748 23.578 9.506 28.902 hybrid contribution 0.058 -1.537 -0.288 1.565 sum -13.691 22.042 9.219 27.536 Atomic orbital electron populations 1.23970 0.94610 1.03227 0.99167 1.21512 0.95360 0.94427 1.01534 1.20797 0.99857 0.93956 1.02362 1.21136 1.00524 0.95453 0.85473 1.58958 1.08909 1.31333 1.16978 1.22666 0.90719 0.97584 0.97652 1.22382 1.01638 0.97288 1.02953 1.22679 0.98153 0.94042 0.82992 1.74495 1.11656 1.09525 1.23535 1.74198 1.15689 1.15564 1.07103 1.20811 0.95242 0.94720 0.90095 1.18574 1.01493 1.01744 0.90231 1.24037 0.97010 0.96842 0.96182 1.47828 1.27540 1.26917 1.03922 1.22696 0.86930 0.84538 1.05423 1.19174 0.96292 0.91661 0.94513 1.21425 1.03532 1.01324 1.31830 0.90006 1.26002 0.97898 1.01178 0.94585 1.70119 1.27163 1.27220 1.32668 0.85400 0.78801 0.77582 0.78669 1.18673 1.21602 1.18867 1.78245 1.08305 1.07646 1.13574 1.75189 1.13725 1.14452 1.10810 1.46078 1.30098 1.30718 1.09358 1.22455 1.04646 1.03992 0.75816 0.87876 0.86439 0.91317 0.90643 0.92646 0.91989 0.90164 0.86093 0.88986 0.95800 0.91350 0.89422 0.75310 0.87192 0.84842 0.98818 0.97959 0.92702 0.89093 0.86557 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 12.58 67.78 0.85 -0.62 16 2 C -0.13 -1.53 5.11 -16.49 -0.08 -1.62 16 3 C -0.11 -1.24 10.03 71.24 0.71 -0.52 16 4 C 0.10 1.68 4.60 85.56 0.39 2.08 16 5 N -0.44 -7.97 4.72 -710.23 -3.35 -11.32 16 6 C 0.04 0.52 5.72 86.30 0.49 1.01 16 7 C -0.18 -2.79 9.35 71.98 0.67 -2.12 16 8 C 0.38 9.53 5.62 260.05 1.46 10.99 16 9 N -0.35 -10.66 11.00 -57.92 -0.64 -11.30 16 10 N -0.28 -9.44 12.21 -50.78 -0.62 -10.06 16 11 C 0.26 8.19 7.94 136.28 1.08 9.27 16 12 C 0.02 0.65 7.06 40.93 0.29 0.94 16 13 C 0.01 0.46 11.54 83.81 0.97 1.42 16 14 N -0.27 -9.63 3.43 -346.68 -1.19 -10.82 16 15 C 0.12 4.30 6.39 86.38 0.55 4.85 16 16 C 0.02 1.05 5.10 29.85 0.15 1.20 16 17 C -0.54 -27.89 9.11 25.60 0.23 -27.66 16 18 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 21 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 N -0.10 -3.92 12.87 37.02 0.48 -3.44 16 26 N -0.27 -9.97 10.77 -49.49 -0.53 -10.51 16 27 N -0.47 -12.22 3.23 -539.92 -1.74 -13.97 16 28 C 0.07 1.40 9.16 127.77 1.17 2.57 16 29 H 0.10 0.78 7.96 -2.91 -0.02 0.76 16 30 H 0.12 0.68 8.05 -2.91 -0.02 0.66 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.61 8.06 -2.38 -0.02 0.59 16 33 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 34 H 0.06 1.05 5.90 -2.39 -0.01 1.04 16 35 H 0.08 1.67 7.47 -2.38 -0.02 1.65 16 36 H 0.12 1.08 6.39 -2.39 -0.02 1.07 16 37 H 0.09 1.08 5.47 -2.39 -0.01 1.06 16 38 H 0.02 0.52 7.01 -2.39 -0.02 0.50 16 39 H 0.07 0.97 6.53 -2.39 -0.02 0.96 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.23 5.40 8.06 -2.91 -0.02 5.37 16 42 H 0.11 3.54 8.14 -2.38 -0.02 3.52 16 43 H 0.13 3.79 8.06 -2.39 -0.02 3.77 16 44 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.00 0.11 8.11 -2.39 -0.02 0.09 16 46 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.09 1.55 7.89 -2.38 -0.02 1.53 16 48 H 0.12 1.58 7.54 -2.39 -0.02 1.57 16 49 H 0.09 2.15 6.71 -2.39 -0.02 2.13 16 Total: -1.00 -70.97 403.10 5.08 -65.89 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.96 Total: 14.29 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 9.41 Total: 2.39 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -7.31 Total: -126.25 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.97 5.08 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338514403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.656 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds