Wall clock time and date at job start Wed Apr 1 2020 03:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.53703 * 2 1 4 4 C 1.53127 * 109.50197 * 120.08856 * 2 1 3 5 5 C 1.53115 * 109.16334 * 177.59621 * 4 2 1 6 6 C 1.53040 * 109.27779 * 302.35167 * 5 4 2 7 7 N 1.46840 * 109.52791 * 59.17508 * 6 5 4 8 8 C 1.38533 * 111.00194 * 174.15973 * 7 6 5 9 9 N 1.31245 * 126.37732 * 68.93679 * 8 7 6 10 10 N 1.28516 * 110.09984 * 179.76617 * 9 8 7 11 11 C 1.31218 * 109.95614 * 0.44761 * 10 9 8 12 12 C 1.47945 * 126.47741 * 179.82469 * 11 10 9 13 13 C 1.36709 * 126.93275 * 359.69041 * 12 11 10 14 14 N 1.35205 * 106.02005 * 180.02562 * 13 12 11 15 15 C 1.46504 * 125.73195 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47144 * 125.00138 * 15 14 13 17 17 C 1.50696 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00085 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99964 * 179.72696 * 17 16 15 20 20 N 1.31517 * 119.99590 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00078 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47426 * 90.00268 * 21 19 17 23 23 H 1.48502 * 109.47261 * 210.00300 * 21 19 17 24 24 H 1.48500 * 109.47145 * 330.00135 * 21 19 17 25 25 N 1.28640 * 108.53516 * 0.26503 * 14 13 12 26 26 N 1.28611 * 110.54562 * 359.55180 * 25 14 13 27 27 N 1.36597 * 126.37996 * 248.97664 * 8 7 6 28 28 C 1.46508 * 127.17671 * 359.94322 * 27 8 7 29 29 C 1.46842 * 111.19675 * 298.26319 * 7 6 5 30 30 H 1.08997 * 109.47196 * 180.10373 * 1 2 3 31 31 H 1.09000 * 109.47443 * 300.10844 * 1 2 3 32 32 H 1.09007 * 109.46895 * 60.10917 * 1 2 3 33 33 H 1.09002 * 109.52488 * 297.50626 * 4 2 1 34 34 H 1.08996 * 109.52180 * 57.62696 * 4 2 1 35 35 H 1.09009 * 109.50215 * 62.28570 * 5 4 2 36 36 H 1.08994 * 109.50405 * 182.36364 * 5 4 2 37 37 H 1.08998 * 109.45825 * 299.15473 * 6 5 4 38 38 H 1.08999 * 109.45743 * 179.19763 * 6 5 4 39 39 H 1.08007 * 126.99217 * 0.02562 * 13 12 11 40 40 H 1.09003 * 109.46682 * 4.99815 * 15 14 13 41 41 H 1.08997 * 109.46652 * 245.00203 * 15 14 13 42 42 H 1.08999 * 109.47504 * 59.99496 * 16 15 14 43 43 H 1.09008 * 109.47008 * 299.99798 * 16 15 14 44 44 H 0.97003 * 119.99226 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.46846 * 264.64158 * 28 27 8 46 46 H 1.08997 * 109.46455 * 24.64622 * 28 27 8 47 47 H 1.09004 * 109.46699 * 144.64512 * 28 27 8 48 48 H 1.09006 * 109.46282 * 181.75823 * 29 7 6 49 49 H 1.09000 * 109.46131 * 301.73165 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0411 -0.7236 1.2489 5 6 3.5711 -0.7718 1.2110 6 6 4.0229 -1.4730 -0.0721 7 7 3.5093 -0.7423 -1.2376 8 6 4.0073 -1.2741 -2.4159 9 7 3.7130 -2.4469 -2.9262 10 7 4.3484 -2.6204 -4.0297 11 6 5.0949 -1.5722 -4.2863 12 6 5.9781 -1.3871 -5.4587 13 6 6.1821 -2.2713 -6.4812 14 7 7.0630 -1.6777 -7.3177 15 6 7.5822 -2.2520 -8.5614 16 6 7.3204 -1.2851 -9.7179 17 6 7.8539 -1.8761 -10.9973 18 1 8.3323 -2.8444 -10.9867 19 6 7.7268 -1.1830 -12.1825 20 7 8.1929 -1.6986 -13.2990 21 14 6.8927 0.4882 -12.2022 22 1 7.9062 1.5501 -11.9780 23 1 6.2377 0.6991 -13.5183 24 1 5.8708 0.5442 -11.1262 25 7 7.3724 -0.5260 -6.8354 26 7 6.7435 -0.3142 -5.7337 27 7 4.8967 -0.6758 -3.2626 28 6 5.5110 0.6457 -3.1118 29 6 2.0410 -0.7236 -1.2478 30 1 -0.3633 -1.0276 0.0019 31 1 -0.3634 0.5155 0.8890 32 1 -0.3633 0.5122 -0.8910 33 1 1.7155 -0.1868 2.1399 34 1 1.6442 -1.7385 1.2699 35 1 3.9677 0.2434 1.2299 36 1 3.9394 -1.3225 2.0765 37 1 3.6375 -2.4925 -0.0837 38 1 5.1120 -1.4962 -0.1089 39 1 5.7313 -3.2459 -6.5972 40 1 7.0824 -3.2001 -8.7602 41 1 8.6547 -2.4200 -8.4640 42 1 7.8201 -0.3370 -9.5191 43 1 6.2478 -1.1170 -9.8153 44 1 8.1031 -1.2111 -14.1328 45 1 4.9354 1.3803 -3.6748 46 1 5.5220 0.9230 -2.0577 47 1 6.5327 0.6168 -3.4906 48 1 1.6906 -0.2025 -2.1388 49 1 1.6648 -1.7466 -1.2539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338677063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:55 Heat of formation + Delta-G solvation = 173.057318 kcal Electronic energy + Delta-G solvation = -29604.705545 eV Core-core repulsion = 25605.260074 eV Total energy + Delta-G solvation = -3999.445471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27408 -42.84636 -39.58243 -35.54792 -35.17209 -34.66353 -32.95246 -32.53304 -31.78319 -30.54639 -28.85674 -27.68197 -27.09022 -25.99956 -25.00301 -23.84408 -22.66709 -22.30896 -21.32178 -21.01584 -20.19033 -19.90659 -17.86982 -17.39008 -16.75195 -16.41778 -16.19790 -16.10664 -15.47312 -15.36550 -15.08217 -14.51237 -14.43428 -14.26417 -14.13983 -13.76356 -13.62843 -13.46519 -12.98806 -12.92469 -12.89144 -12.39737 -12.33084 -12.07755 -11.89423 -11.67038 -11.49723 -11.38374 -11.22863 -11.07207 -10.96864 -10.91626 -10.78584 -10.71305 -10.41724 -10.33612 -10.07130 -10.02915 -9.68565 -9.53239 -9.15603 -8.74355 -8.53378 -6.25513 -4.28495 1.10960 1.85530 1.94501 2.28077 2.61416 3.11136 3.21166 3.28913 3.32783 3.34013 3.80247 4.20880 4.28506 4.36261 4.39792 4.51842 4.61410 4.72280 4.83606 4.92699 4.96152 5.02160 5.05613 5.08764 5.09662 5.12333 5.16582 5.29855 5.32461 5.37902 5.40345 5.44231 5.49287 5.55696 5.61754 5.66300 5.70280 5.75887 5.83878 5.87429 5.92074 5.98230 6.02994 6.33661 6.36827 6.60487 6.92042 6.97364 6.97617 7.46789 8.22023 8.48566 8.56817 8.73460 9.34043 10.86442 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.001914 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.511327 B =14626.736596 C =14924.983801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.118 4.118 5 C -0.116 4.116 6 C 0.065 3.935 7 N -0.462 5.462 8 C 0.341 3.659 9 N -0.304 5.304 10 N -0.271 5.271 11 C 0.282 3.718 12 C 0.022 3.978 13 C 0.010 3.990 14 N -0.269 5.269 15 C 0.119 3.881 16 C -0.021 4.021 17 C -0.532 4.532 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.892 5.892 21 Si 0.879 3.121 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.266 1.266 25 N -0.062 5.062 26 N -0.268 5.268 27 N -0.452 5.452 28 C 0.082 3.918 29 C 0.073 3.927 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.201 0.799 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.033 0.967 43 H 0.025 0.975 44 H 0.267 0.733 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 2.952 29.883 32.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.062 4.062 7 N -0.188 5.188 8 C -0.015 4.015 9 N -0.149 5.149 10 N -0.114 5.114 11 C 0.015 3.985 12 C -0.118 4.118 13 C -0.146 4.146 14 N -0.060 5.060 15 C 0.000 4.000 16 C -0.059 4.059 17 C -0.571 4.571 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.529 5.529 21 Si 0.705 3.295 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.191 1.191 25 N -0.043 5.043 26 N -0.137 5.137 27 N -0.143 5.143 28 C -0.060 4.060 29 C -0.054 4.054 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.218 0.782 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.902 3.434 29.333 31.481 hybrid contribution -0.617 0.438 -0.152 0.772 sum -11.519 3.872 29.181 31.610 Atomic orbital electron populations 1.21785 0.94378 1.02192 1.02094 1.21195 0.95584 1.00257 0.93706 0.90146 1.21684 0.95311 1.00901 0.97689 1.21609 0.96097 1.01658 0.95976 1.22185 1.00034 0.95889 0.88112 1.58542 1.10185 1.52575 0.97510 1.22130 0.95631 0.90107 0.93623 1.74557 1.21522 1.13515 1.05325 1.74361 1.07952 1.19737 1.09366 1.21006 0.99836 0.88069 0.89598 1.18360 1.03371 0.94800 0.95255 1.23565 0.97642 1.01993 0.91411 1.47943 1.27492 1.11785 1.18828 1.22692 1.00750 0.98680 0.77839 1.19891 0.98149 0.95333 0.92550 1.20761 1.40012 1.06571 0.89716 0.90336 1.24912 0.94597 0.97836 0.95330 1.69882 1.45374 1.38665 0.98997 0.86793 0.80465 0.84530 0.77679 1.19838 1.21047 1.19097 1.78236 1.19666 1.01146 1.05215 1.75264 1.08246 1.21669 1.08511 1.46181 1.33809 1.16681 1.17667 1.22152 1.00137 0.79691 1.04066 1.22205 0.83295 1.00841 0.99043 0.92445 0.92158 0.92400 0.91390 0.91754 0.90855 0.90734 0.92828 0.90618 0.78173 0.87514 0.88068 0.94856 0.95674 0.92274 0.90027 0.88914 0.88094 0.90546 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.20 37.15 0.34 -0.42 16 2 C -0.09 -0.54 2.88 -90.54 -0.26 -0.80 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.62 5.29 -26.61 -0.14 -0.77 16 5 C -0.12 -0.64 6.09 -26.65 -0.16 -0.81 16 6 C 0.06 0.52 5.39 -3.84 -0.02 0.50 16 7 N -0.46 -4.46 4.64 -174.52 -0.81 -5.27 16 8 C 0.34 4.36 6.46 -318.71 -2.06 2.30 16 9 N -0.30 -4.61 12.10 30.34 0.37 -4.25 16 10 N -0.27 -4.38 12.21 32.60 0.40 -3.98 16 11 C 0.28 4.30 7.94 -153.82 -1.22 3.08 16 12 C 0.02 0.34 7.07 -83.21 -0.59 -0.25 16 13 C 0.01 0.14 11.54 -16.62 -0.19 -0.05 16 14 N -0.27 -4.51 3.43 -60.93 -0.21 -4.72 16 15 C 0.12 2.01 6.38 -4.04 -0.03 1.99 16 16 C -0.02 -0.46 4.17 -27.89 -0.12 -0.57 16 17 C -0.53 -13.85 9.66 -34.44 -0.33 -14.18 16 18 H 0.08 2.13 7.99 -52.48 -0.42 1.71 16 19 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 21 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 25 N -0.06 -1.14 12.88 60.35 0.78 -0.37 16 26 N -0.27 -4.57 10.91 33.01 0.36 -4.21 16 27 N -0.45 -5.92 3.23 -122.01 -0.39 -6.32 16 28 C 0.08 0.82 10.74 59.85 0.64 1.47 16 29 C 0.07 0.63 4.59 -3.84 -0.02 0.61 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.20 2.36 8.06 -52.48 -0.42 1.94 16 40 H 0.11 1.57 8.06 -51.93 -0.42 1.15 16 41 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 42 H 0.03 0.76 7.56 -51.93 -0.39 0.36 16 43 H 0.02 0.57 7.18 -51.92 -0.37 0.19 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 47 H 0.10 1.09 7.01 -51.93 -0.36 0.72 16 48 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -31.62 400.66 -9.51 -41.14 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.89 Total: -3.28 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -4.25 Total: -5.88 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 1.26 Total: -54.34 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.62 -9.51 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338677063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.196 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds