Wall clock time and date at job start Wed Apr 1 2020 03:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.64663 * 2 1 4 4 C 1.54592 * 110.72908 * 236.84498 * 2 1 3 5 5 C 1.53994 * 105.14173 * 219.68842 * 4 2 1 6 6 H 1.08998 * 109.91782 * 118.12600 * 5 4 2 7 7 C 1.53005 * 109.91313 * 239.22183 * 5 4 2 8 8 N 1.47898 * 107.05571 * 358.76777 * 5 4 2 9 9 C 1.38540 * 110.99420 * 145.85032 * 8 5 4 10 10 N 1.31244 * 126.38144 * 359.68316 * 9 8 5 11 11 N 1.28510 * 110.10009 * 179.88260 * 10 9 8 12 12 C 1.31226 * 109.95451 * 0.39839 * 11 10 9 13 13 C 1.47956 * 126.47144 * 179.74289 * 12 11 10 14 14 C 1.36717 * 126.93334 * 359.73253 * 13 12 11 15 15 N 1.35204 * 106.01473 * 179.90866 * 14 13 12 16 16 C 1.46489 * 125.73065 * 180.14890 * 15 14 13 17 17 C 1.53002 * 109.47245 * 125.26931 * 16 15 14 18 18 C 1.50697 * 109.47535 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99814 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00411 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00052 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00308 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47077 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47155 * 120.00402 * 22 20 18 25 25 H 1.48502 * 109.47164 * 240.00319 * 22 20 18 26 26 N 1.28637 * 108.53659 * 0.36028 * 15 14 13 27 27 N 1.28606 * 110.54915 * 359.76971 * 26 15 14 28 28 N 1.36607 * 126.37445 * 180.02562 * 9 8 5 29 29 C 1.46498 * 127.17931 * 359.97438 * 28 9 8 30 30 C 1.48532 * 105.82337 * 25.33705 * 8 5 4 31 31 H 1.09002 * 109.47153 * 183.15474 * 1 2 3 32 32 H 1.09001 * 109.46832 * 63.15664 * 1 2 3 33 33 H 1.09004 * 109.47261 * 303.15646 * 1 2 3 34 34 H 1.09003 * 110.30614 * 338.59870 * 4 2 1 35 35 H 1.08991 * 110.31125 * 100.66480 * 4 2 1 36 36 H 1.08994 * 109.47499 * 59.99584 * 7 5 4 37 37 H 1.08997 * 109.47048 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46851 * 299.99765 * 7 5 4 39 39 H 1.07994 * 126.99297 * 0.02562 * 14 13 12 40 40 H 1.09003 * 109.47539 * 245.26714 * 16 15 14 41 41 H 1.09007 * 109.47360 * 5.27239 * 16 15 14 42 42 H 1.09000 * 109.47170 * 300.00200 * 17 16 15 43 43 H 1.09000 * 109.47023 * 59.99717 * 17 16 15 44 44 H 0.97001 * 120.00242 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.47280 * 90.00174 * 29 28 9 46 46 H 1.09000 * 109.47159 * 210.00578 * 29 28 9 47 47 H 1.09000 * 109.47013 * 330.00154 * 29 28 9 48 48 H 1.08993 * 110.66720 * 202.35580 * 30 8 5 49 49 H 1.08997 * 110.66891 * 79.22104 * 30 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0772 -0.7907 -1.2105 5 6 3.2894 -1.5698 -0.6673 6 1 3.1161 -2.6415 -0.7649 7 6 4.5509 -1.1737 -1.4371 8 7 3.4318 -1.2103 0.7603 9 6 3.8933 -2.2872 1.4996 10 7 4.1733 -3.4843 1.0400 11 7 4.5796 -4.2406 1.9963 12 6 4.5756 -3.5743 3.1268 13 6 4.9694 -4.0936 4.4551 14 6 5.4024 -5.3569 4.7479 15 7 5.6458 -5.3689 6.0778 16 6 6.1331 -6.5157 6.8480 17 6 7.3986 -6.1177 7.6102 18 6 7.9003 -7.2976 8.4020 19 1 7.3699 -8.2376 8.3650 20 6 9.0371 -7.1775 9.1729 21 7 9.6834 -6.0330 9.2176 22 14 9.6594 -8.6404 10.1538 23 1 8.7609 -9.8021 9.9339 24 1 11.0332 -8.9864 9.7089 25 1 9.6790 -8.2956 11.5981 26 7 5.3734 -4.2053 6.5539 27 7 4.9682 -3.4191 5.6203 28 7 4.1356 -2.3027 2.8439 29 6 3.9626 -1.1955 3.7875 30 6 2.0783 -0.7965 1.2107 31 1 -0.3633 -1.0261 0.0566 32 1 -0.3633 0.4641 -0.9170 33 1 -0.3634 0.5621 0.8604 34 1 1.3209 -1.4808 -1.5847 35 1 2.3880 -0.1067 -2.0000 36 1 4.7283 -0.1048 -1.3187 37 1 5.4038 -1.7293 -1.0474 38 1 4.4192 -1.4052 -2.4941 39 1 5.5267 -6.1777 4.0572 40 1 5.3664 -6.8302 7.5561 41 1 6.3609 -7.3384 6.1701 42 1 8.1654 -5.8032 6.9022 43 1 7.1709 -5.2950 8.2881 44 1 10.4830 -5.9483 9.7602 45 1 2.9510 -1.2181 4.1927 46 1 4.6819 -1.2950 4.6003 47 1 4.1262 -0.2494 3.2714 48 1 2.1444 -0.1591 2.0924 49 1 1.4560 -1.6687 1.4109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340035468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:06 Heat of formation + Delta-G solvation = 178.833128 kcal Electronic energy + Delta-G solvation = -29688.486389 eV Core-core repulsion = 25689.291376 eV Total energy + Delta-G solvation = -3999.195013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.17162 -42.75575 -39.78113 -35.42355 -34.97837 -34.12705 -32.98094 -32.29771 -31.44901 -30.08274 -28.85648 -27.72294 -27.02063 -25.68701 -25.60698 -23.71232 -22.76635 -22.07318 -21.31287 -21.01008 -20.14266 -19.70041 -17.71674 -17.22249 -16.63251 -16.38036 -16.17219 -15.92249 -15.80055 -15.16331 -14.85603 -14.58650 -14.23297 -13.98160 -13.87780 -13.53749 -13.41393 -13.28992 -12.90846 -12.78596 -12.68431 -12.50785 -12.13377 -11.97901 -11.88809 -11.71504 -11.47771 -11.33378 -11.19908 -11.03485 -10.95878 -10.95090 -10.85773 -10.72104 -10.48826 -10.27512 -10.22125 -10.05238 -9.51076 -9.44876 -9.26758 -8.57070 -8.14410 -6.20839 -4.27801 1.23620 1.98981 2.02955 2.39662 2.75207 3.20815 3.22380 3.29019 3.31572 3.41071 3.89894 3.96852 4.13980 4.29944 4.40092 4.58406 4.69845 4.71601 4.85811 4.88963 4.99377 5.03803 5.05370 5.10947 5.15737 5.17867 5.19572 5.24602 5.33822 5.39629 5.42106 5.48996 5.53739 5.59911 5.67408 5.73787 5.78505 5.86096 5.92011 5.95621 6.02504 6.05330 6.20559 6.28322 6.43429 6.80267 6.98461 7.34148 7.42772 7.73396 8.04786 8.62178 8.70624 8.77532 9.38295 10.90174 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.001827 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.402669 B =15321.613131 C =15618.226285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.074 3.926 6 H 0.086 0.914 7 C -0.134 4.134 8 N -0.432 5.432 9 C 0.350 3.650 10 N -0.314 5.314 11 N -0.268 5.268 12 C 0.278 3.722 13 C 0.023 3.977 14 C 0.005 3.995 15 N -0.265 5.265 16 C 0.109 3.891 17 C 0.014 3.986 18 C -0.533 4.533 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.900 3.100 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 N -0.058 5.058 27 N -0.273 5.273 28 N -0.467 5.467 29 C 0.076 3.924 30 C 0.040 3.960 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.199 0.801 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.025 0.975 43 H 0.038 0.962 44 H 0.264 0.736 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.557 12.314 -19.557 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.107 0.893 4 C -0.163 4.163 5 C -0.033 4.033 6 H 0.104 0.896 7 C -0.192 4.192 8 N -0.156 5.156 9 C -0.007 4.007 10 N -0.160 5.160 11 N -0.110 5.110 12 C 0.011 3.989 13 C -0.117 4.117 14 C -0.151 4.151 15 N -0.057 5.057 16 C -0.009 4.009 17 C -0.024 4.024 18 C -0.571 4.571 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.727 3.273 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.208 1.208 26 N -0.038 5.038 27 N -0.141 5.141 28 N -0.161 5.161 29 C -0.066 4.066 30 C -0.087 4.087 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.216 0.784 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.127 0.873 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.888 12.572 -19.058 28.398 hybrid contribution 0.026 -0.926 0.628 1.120 sum -16.862 11.645 -18.430 27.560 Atomic orbital electron populations 1.21786 0.93907 1.02215 1.02278 1.22063 0.95869 0.99754 0.93537 0.89317 1.22633 0.96593 0.99051 0.97987 1.22445 0.96382 1.00679 0.83837 0.89565 1.21730 0.96691 1.01831 0.98931 1.61438 1.24007 1.26537 1.03606 1.22583 1.03717 0.92484 0.81888 1.74485 1.20388 0.98076 1.23069 1.74301 1.17886 1.24302 0.94494 1.20966 1.03044 0.81590 0.93267 1.18360 1.10971 0.92406 0.89930 1.23522 1.04736 1.00099 0.86746 1.47924 1.39333 1.11747 1.06649 1.22910 1.00613 0.82252 0.95123 1.19436 0.88925 0.98658 0.95385 1.20955 1.10876 0.96937 1.28345 0.91939 1.25001 0.96407 0.96141 0.96506 1.69980 1.18352 1.24279 1.39718 0.86412 0.78802 0.82271 0.79790 1.19545 1.20828 1.20784 1.78251 1.15183 0.89489 1.20869 1.75234 1.17429 1.25161 0.96275 1.45972 1.50312 1.12091 1.07676 1.22235 1.04450 0.87056 0.92897 1.23502 0.86641 0.99365 0.99209 0.92448 0.91934 0.92232 0.90697 0.90133 0.92118 0.92161 0.91735 0.78400 0.88713 0.88174 0.95640 0.94333 0.92593 0.90384 0.87313 0.89226 0.89258 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.16 37.16 0.34 -0.32 16 2 C -0.09 -0.53 3.66 -88.76 -0.32 -0.86 16 3 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 4 C -0.12 -0.76 6.14 -25.38 -0.16 -0.92 16 5 C 0.07 0.66 2.85 -66.64 -0.19 0.47 16 6 H 0.09 0.94 6.83 -51.93 -0.35 0.58 16 7 C -0.13 -1.14 9.33 37.16 0.35 -0.79 16 8 N -0.43 -4.42 4.96 -163.05 -0.81 -5.23 16 9 C 0.35 4.70 7.04 -318.68 -2.24 2.46 16 10 N -0.31 -4.95 10.67 30.34 0.32 -4.63 16 11 N -0.27 -4.53 12.21 32.60 0.40 -4.13 16 12 C 0.28 4.48 7.94 -153.81 -1.22 3.26 16 13 C 0.02 0.39 7.06 -83.21 -0.59 -0.20 16 14 C 0.00 0.08 11.54 -16.62 -0.19 -0.12 16 15 N -0.26 -4.76 3.43 -60.93 -0.21 -4.97 16 16 C 0.11 1.97 6.38 -4.05 -0.03 1.95 16 17 C 0.01 0.33 5.10 -27.88 -0.14 0.19 16 18 C -0.53 -13.77 9.11 -34.44 -0.31 -14.09 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 N -0.06 -1.13 12.87 60.35 0.78 -0.36 16 27 N -0.27 -4.94 10.76 33.01 0.36 -4.58 16 28 N -0.47 -6.41 3.23 -122.01 -0.39 -6.80 16 29 C 0.08 0.80 9.72 59.85 0.58 1.38 16 30 C 0.04 0.31 5.47 -1.90 -0.01 0.30 16 31 H 0.06 0.29 8.10 -51.93 -0.42 -0.13 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.42 7.85 -51.93 -0.41 0.02 16 35 H 0.08 0.40 7.69 -51.93 -0.40 0.01 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.20 2.54 8.06 -52.49 -0.42 2.11 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.10 1.55 8.06 -51.92 -0.42 1.13 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.11 1.31 6.70 -51.93 -0.35 0.96 16 47 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 48 H 0.09 0.60 7.24 -51.93 -0.38 0.23 16 49 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -31.96 402.03 -9.76 -41.71 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.74 Total: -2.01 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -4.24 Total: -5.68 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 1.18 Total: -55.52 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.96 -9.76 -41.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340035468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.545 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds