Wall clock time and date at job start Wed Apr 1 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47199 * 2 1 4 4 H 1.08991 * 110.42260 * 57.31318 * 3 2 1 5 5 C 1.54908 * 110.37548 * 179.62901 * 3 2 1 6 6 C 1.55135 * 101.65581 * 155.89653 * 5 3 2 7 7 C 1.54318 * 103.01780 * 324.34621 * 6 5 3 8 8 N 1.47438 * 107.23484 * 22.28122 * 7 6 5 9 9 C 1.38537 * 110.99842 * 123.25654 * 8 7 6 10 10 N 1.31250 * 126.37877 * 239.89899 * 9 8 7 11 11 N 1.28510 * 110.09970 * 179.97438 * 10 9 8 12 12 C 1.31232 * 109.95523 * 359.75100 * 11 10 9 13 13 C 1.47945 * 126.47360 * 180.24358 * 12 11 10 14 14 C 1.36715 * 126.93659 * 359.88055 * 13 12 11 15 15 N 1.35203 * 106.01744 * 179.85334 * 14 13 12 16 16 C 1.46503 * 125.72844 * 180.13295 * 15 14 13 17 17 C 1.53002 * 109.47031 * 125.30943 * 16 15 14 18 18 C 1.50693 * 109.46871 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00298 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00108 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99686 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00435 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47360 * 90.00190 * 22 20 18 24 24 H 1.48498 * 109.47227 * 209.99987 * 22 20 18 25 25 H 1.48505 * 109.46894 * 330.00279 * 22 20 18 26 26 N 1.28642 * 108.53880 * 0.41649 * 15 14 13 27 27 N 1.28608 * 110.54265 * 359.73560 * 26 15 14 28 28 N 1.36604 * 126.37721 * 59.87471 * 9 8 7 29 29 C 1.46499 * 127.17664 * 359.97438 * 28 9 8 30 30 H 1.09001 * 109.47092 * 60.00018 * 1 2 3 31 31 H 1.08993 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47174 * 300.00172 * 1 2 3 33 33 H 1.09002 * 109.47174 * 239.99828 * 2 1 3 34 34 H 1.09001 * 109.47092 * 119.99982 * 2 1 3 35 35 H 1.09000 * 110.98958 * 37.80452 * 5 3 2 36 36 H 1.09005 * 111.02377 * 274.00763 * 5 3 2 37 37 H 1.09003 * 110.70564 * 205.96455 * 6 5 3 38 38 H 1.09000 * 110.85215 * 82.79940 * 6 5 3 39 39 H 1.09000 * 109.89010 * 262.87252 * 7 6 5 40 40 H 1.08997 * 109.88744 * 141.68854 * 7 6 5 41 41 H 1.08004 * 126.98415 * 359.97438 * 14 13 12 42 42 H 1.08998 * 109.47083 * 245.31085 * 16 15 14 43 43 H 1.08997 * 109.46985 * 5.31216 * 16 15 14 44 44 H 1.08998 * 109.47303 * 300.00008 * 17 16 15 45 45 H 1.09002 * 109.46867 * 59.99830 * 17 16 15 46 46 H 0.97005 * 119.99682 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.47391 * 89.99685 * 29 28 9 48 48 H 1.09001 * 109.46813 * 329.99741 * 29 28 9 49 49 H 1.09004 * 109.47041 * 209.99868 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6467 1.9850 0.8596 5 6 3.5888 1.4670 0.0094 6 6 3.8842 2.8573 -0.6123 7 6 2.7616 3.0154 -1.6593 8 7 1.6594 2.1230 -1.2562 9 6 0.4792 2.8314 -1.0991 10 7 -0.2309 2.9269 0.0005 11 7 -1.2655 3.6612 -0.2042 12 6 -1.2759 4.0838 -1.4466 13 6 -2.2958 4.9552 -2.0706 14 6 -3.4093 5.4755 -1.4719 15 7 -4.0364 6.2060 -2.4212 16 6 -5.2812 6.9569 -2.2395 17 6 -5.0624 8.4143 -2.6508 18 6 -6.3429 9.1864 -2.4645 19 1 -7.2246 8.6878 -2.0899 20 6 -6.3888 10.5298 -2.7714 21 7 -5.3150 11.1372 -3.2271 22 14 -7.9760 11.4872 -2.5398 23 1 -8.0169 12.0534 -1.1676 24 1 -8.0381 12.5901 -3.5323 25 1 -9.1347 10.5793 -2.7355 26 7 -3.3596 6.1262 -3.5123 27 7 -2.3177 5.3912 -3.3442 28 7 -0.1618 3.5609 -2.0598 29 6 0.2545 3.7520 -3.4513 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9957 0.6678 -0.6102 36 1 3.9748 1.4042 1.0269 37 1 4.8628 2.8648 -1.0923 38 1 3.8205 3.6412 0.1424 39 1 3.1299 2.7282 -2.6442 40 1 2.4145 4.0485 -1.6776 41 1 -3.7230 5.3336 -0.4482 42 1 -6.0637 6.5182 -2.8586 43 1 -5.5807 6.9159 -1.1923 44 1 -4.2798 8.8529 -2.0317 45 1 -4.7628 8.4552 -3.6980 46 1 -5.3473 12.0823 -3.4434 47 1 -0.1781 2.9667 -4.0712 48 1 1.3418 3.7073 -3.5146 49 1 -0.0903 4.7242 -3.8035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340036133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:09 Heat of formation + Delta-G solvation = 164.058395 kcal Electronic energy + Delta-G solvation = -30037.178840 eV Core-core repulsion = 26037.343146 eV Total energy + Delta-G solvation = -3999.835693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.44363 -43.95437 -40.38002 -36.90201 -36.15213 -34.88625 -34.20574 -33.94391 -32.42900 -31.80400 -29.58526 -29.09189 -28.46552 -27.45549 -25.11602 -24.50295 -24.26098 -22.90988 -22.65828 -22.07520 -21.34799 -20.66215 -19.06571 -18.66429 -17.96640 -17.72372 -17.41237 -17.10015 -16.56559 -16.51813 -16.28948 -15.53314 -15.48798 -15.11874 -14.78173 -14.39164 -14.34083 -14.16371 -14.06696 -13.97725 -13.68848 -13.62430 -13.27305 -13.08499 -12.90343 -12.76160 -12.71576 -12.41166 -12.33499 -12.20330 -12.19637 -11.93205 -11.82425 -11.69580 -11.56026 -11.51031 -11.46867 -11.36094 -11.18909 -10.97583 -10.62286 -10.29854 -9.16780 -8.26087 -6.39582 0.08730 0.64889 1.00584 1.26882 1.39486 1.44236 1.46646 1.55722 1.99879 2.39645 2.50135 2.76932 3.09873 3.35569 3.45450 3.56781 3.74905 3.79014 3.95903 3.97147 3.99022 4.13171 4.22981 4.24628 4.27584 4.32120 4.39625 4.50355 4.55500 4.55930 4.59533 4.68956 4.72475 4.79210 4.87171 4.91017 4.96200 5.03914 5.09564 5.11799 5.22924 5.27475 5.28745 5.34139 5.43632 5.48130 5.49841 5.64803 5.74183 6.04187 6.05879 6.76759 7.28607 7.31707 7.55218 8.86320 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.001947 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.170053 B =14375.008918 C =14717.446964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C 0.075 3.925 4 H 0.067 0.933 5 C -0.115 4.115 6 C -0.135 4.135 7 C 0.034 3.966 8 N -0.439 5.439 9 C 0.370 3.630 10 N -0.334 5.334 11 N -0.284 5.284 12 C 0.256 3.744 13 C 0.019 3.981 14 C 0.015 3.985 15 N -0.271 5.271 16 C 0.122 3.878 17 C 0.022 3.978 18 C -0.541 4.541 19 H 0.082 0.918 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.289 1.289 25 H -0.256 1.256 26 N -0.098 5.098 27 N -0.275 5.275 28 N -0.471 5.471 29 C 0.075 3.925 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.231 0.769 42 H 0.110 0.890 43 H 0.134 0.866 44 H -0.007 1.007 45 H 0.002 0.998 46 H 0.264 0.736 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.464 -22.234 5.559 29.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.032 4.032 4 H 0.085 0.915 5 C -0.153 4.153 6 C -0.173 4.173 7 C -0.092 4.092 8 N -0.164 5.164 9 C 0.013 3.987 10 N -0.181 5.181 11 N -0.126 5.126 12 C -0.011 4.011 13 C -0.121 4.121 14 C -0.140 4.140 15 N -0.062 5.062 16 C 0.004 3.996 17 C -0.016 4.016 18 C -0.579 4.579 19 H 0.100 0.900 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.215 1.215 25 H -0.180 1.180 26 N -0.078 5.078 27 N -0.143 5.143 28 N -0.165 5.165 29 C -0.066 4.066 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.065 0.935 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.012 0.988 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.131 0.869 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.104 -22.193 4.983 29.070 hybrid contribution -0.596 1.561 -0.032 1.671 sum 17.508 -20.632 4.951 27.508 Atomic orbital electron populations 1.21661 0.97058 1.00568 1.00470 1.21447 0.94874 0.93990 1.03295 1.22890 0.96725 0.95532 0.88030 0.91500 1.22802 0.91697 0.97560 1.03241 1.22774 0.99118 0.97755 0.97659 1.23187 0.89811 0.94115 1.02052 1.60440 0.98439 1.24050 1.33433 1.22864 0.96723 0.94128 0.84945 1.74472 1.04028 1.19217 1.20340 1.74214 1.15595 1.11047 1.11740 1.20821 0.89299 1.00773 0.90238 1.18596 0.96384 1.04939 0.92155 1.24030 0.94101 0.96965 0.98946 1.47835 1.20246 1.31207 1.06921 1.22700 0.79175 0.91878 1.05843 1.19172 0.97045 0.89374 0.96025 1.21445 0.97230 0.94712 1.44531 0.89999 1.26020 1.00125 0.99233 0.94431 1.70132 1.30808 1.11313 1.44955 0.85334 0.79113 0.78025 0.77895 1.19753 1.21461 1.17980 1.78243 1.01867 1.17227 1.10460 1.75189 1.13511 1.10271 1.15324 1.46136 1.18970 1.38505 1.12911 1.22388 1.03129 1.04943 0.76154 0.95820 0.92492 0.93535 0.90677 0.89187 0.88517 0.88475 0.87438 0.91761 0.86808 0.93467 0.75295 0.87222 0.84815 0.98829 0.97978 0.92697 0.89237 0.86925 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.65 71.98 0.62 -2.25 16 2 C -0.10 -1.42 5.66 30.59 0.17 -1.25 16 3 C 0.07 1.19 2.43 45.39 0.11 1.30 16 4 H 0.07 1.40 6.90 -2.39 -0.02 1.38 16 5 C -0.12 -1.00 6.49 31.98 0.21 -0.79 16 6 C -0.13 -1.25 6.94 31.77 0.22 -1.03 16 7 C 0.03 0.46 5.21 86.65 0.45 0.91 16 8 N -0.44 -8.14 4.73 -672.18 -3.18 -11.31 16 9 C 0.37 9.54 5.25 260.05 1.37 10.91 16 10 N -0.33 -10.26 9.19 -57.92 -0.53 -10.79 16 11 N -0.28 -9.50 12.21 -50.78 -0.62 -10.12 16 12 C 0.26 8.26 7.94 136.27 1.08 9.34 16 13 C 0.02 0.65 7.06 40.93 0.29 0.94 16 14 C 0.02 0.47 11.54 83.82 0.97 1.44 16 15 N -0.27 -9.74 3.43 -346.67 -1.19 -10.93 16 16 C 0.12 4.33 6.39 86.38 0.55 4.88 16 17 C 0.02 1.07 5.10 29.85 0.15 1.22 16 18 C -0.54 -27.87 9.11 25.60 0.23 -27.64 16 19 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 22 Si 0.97 41.81 29.54 68.60 2.03 43.84 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 N -0.10 -3.98 12.87 37.02 0.48 -3.50 16 27 N -0.27 -10.20 10.75 -49.48 -0.53 -10.74 16 28 N -0.47 -12.77 3.18 -539.91 -1.72 -14.48 16 29 C 0.08 1.56 10.66 127.77 1.36 2.92 16 30 H 0.02 0.59 6.50 -2.39 -0.02 0.58 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.10 7.72 -2.39 -0.02 1.09 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.59 8.06 -2.39 -0.02 0.57 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.11 1.02 7.94 -2.39 -0.02 1.00 16 40 H 0.05 0.79 7.07 -2.39 -0.02 0.77 16 41 H 0.23 5.48 8.06 -2.91 -0.02 5.46 16 42 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.13 3.83 8.06 -2.39 -0.02 3.81 16 44 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.00 0.10 8.11 -2.39 -0.02 0.08 16 46 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 47 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.11 1.62 5.95 -2.39 -0.01 1.60 16 49 H 0.09 2.22 6.68 -2.38 -0.02 2.21 16 Total: -1.00 -71.94 394.81 4.23 -67.72 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.96 Total: 13.93 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 8.25 Total: 1.40 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -7.01 Total: -126.89 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -71.94 4.23 -67.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340036133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.776 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds