Wall clock time and date at job start Wed Apr 1 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47059 * 2 1 4 4 C 1.36748 * 127.13503 * 264.35258 * 3 2 1 5 5 C 1.50697 * 126.34640 * 359.96492 * 4 3 2 6 6 C 1.53000 * 109.47466 * 89.99856 * 5 4 3 7 7 C 1.52994 * 109.47225 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47139 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99538 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00009 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99995 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99902 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47269 * 60.00012 * 12 10 8 14 14 H 1.48501 * 109.47232 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47162 * 299.99849 * 12 10 8 16 16 N 1.30292 * 107.30190 * 179.83506 * 4 3 2 17 17 N 1.28527 * 110.05431 * 0.44128 * 16 4 3 18 18 C 1.31216 * 109.86233 * 359.72105 * 17 16 4 19 19 N 1.38580 * 126.47123 * 180.02562 * 18 17 16 20 20 C 1.44794 * 111.00068 * 70.70801 * 19 18 17 21 21 C 1.50936 * 116.67421 * 161.29212 * 20 19 18 22 22 C 1.53672 * 110.97151 * 72.46556 * 21 20 19 23 23 N 1.47754 * 106.94680 * 280.36951 * 22 21 20 24 24 N 1.28184 * 127.63626 * 244.29523 * 23 22 21 25 25 N 1.29021 * 109.86137 * 179.41581 * 24 23 22 26 26 C 1.34183 * 108.93030 * 0.15704 * 25 24 23 27 27 C 1.34407 * 105.99490 * 0.06092 * 26 25 24 28 28 C 1.47582 * 110.99953 * 304.63187 * 19 18 17 29 29 H 1.09000 * 109.46963 * 59.99785 * 1 2 3 30 30 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46634 * 300.00190 * 1 2 3 32 32 H 1.08995 * 109.47048 * 119.99735 * 2 1 3 33 33 H 1.09001 * 109.47214 * 240.00297 * 2 1 3 34 34 H 1.09007 * 109.46891 * 210.00339 * 5 4 3 35 35 H 1.09001 * 109.47310 * 330.00022 * 5 4 3 36 36 H 1.09000 * 109.47098 * 300.00089 * 6 5 4 37 37 H 1.09001 * 109.46720 * 59.99804 * 6 5 4 38 38 H 1.09000 * 109.47418 * 300.00215 * 7 6 5 39 39 H 1.09001 * 109.47169 * 60.00400 * 7 6 5 40 40 H 0.97001 * 119.99777 * 180.02562 * 11 10 8 41 41 H 1.08995 * 108.00930 * 283.12254 * 20 19 18 42 42 H 1.09003 * 108.01235 * 39.49463 * 20 19 18 43 43 H 1.08998 * 109.19092 * 312.07800 * 21 20 19 44 44 H 1.08998 * 109.13291 * 192.81338 * 21 20 19 45 45 H 1.09003 * 109.95726 * 161.01163 * 22 21 20 46 46 H 1.09002 * 110.03034 * 39.77370 * 22 21 20 47 47 H 1.07993 * 127.00632 * 180.08375 * 26 25 24 48 48 H 1.09002 * 109.95529 * 324.52183 * 28 19 18 49 49 H 1.09000 * 109.95685 * 85.79328 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3947 2.1238 -1.0849 5 6 2.3866 1.6722 -2.5226 6 6 1.0303 1.9971 -3.1517 7 6 1.0224 1.5391 -4.6114 8 6 -0.3134 1.8598 -5.2313 9 1 -1.0798 2.3423 -4.6429 10 6 -0.5570 1.5371 -6.5494 11 7 0.3762 0.9490 -7.2657 12 14 -2.2124 1.9351 -7.3178 13 1 -2.4464 3.4003 -7.2581 14 1 -2.2202 1.4905 -8.7347 15 1 -3.2865 1.2314 -6.5718 16 7 2.7588 3.2950 -0.6453 17 7 2.6479 3.3395 0.6344 18 6 2.1976 2.1916 1.0830 19 7 1.9504 1.8644 2.4067 20 6 0.7917 2.5729 2.9087 21 6 0.1432 2.0159 4.1526 22 6 1.0142 2.2777 5.3913 23 7 2.0827 1.2572 5.3901 24 7 2.2803 0.3298 6.2527 25 7 3.3044 -0.3763 5.9102 26 6 3.8078 0.1129 4.7667 27 6 3.0296 1.1579 4.4366 28 6 3.1511 2.0786 3.2377 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1745 2.1894 -3.0703 35 1 2.5592 0.5968 -2.5666 36 1 0.2425 1.4799 -2.6040 37 1 0.8576 3.0724 -3.1076 38 1 1.8101 2.0567 -5.1589 39 1 1.1952 0.4638 -4.6559 40 1 0.2049 0.7223 -8.1931 41 1 1.0887 3.6012 3.1148 42 1 0.0412 2.5943 2.1185 43 1 0.0039 0.9414 4.0336 44 1 -0.8285 2.4896 4.2917 45 1 0.4125 2.1853 6.2955 46 1 1.4517 3.2746 5.3362 47 1 4.6635 -0.2577 4.2221 48 1 4.0468 1.8312 2.6679 49 1 3.1943 3.1163 3.5684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340093399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:36 Heat of formation + Delta-G solvation = 180.571698 kcal Electronic energy + Delta-G solvation = -30632.464923 eV Core-core repulsion = 26633.345301 eV Total energy + Delta-G solvation = -3999.119623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.75532 -43.02326 -38.87817 -35.90820 -35.62279 -34.66935 -32.74418 -32.57249 -31.78574 -30.65330 -29.64553 -27.35979 -27.20754 -26.02267 -24.22543 -23.76874 -23.27810 -22.42058 -21.10322 -20.81918 -20.54345 -20.03139 -18.12412 -17.58894 -16.74242 -16.60085 -16.35991 -16.22510 -15.53213 -15.23984 -14.73125 -14.55731 -14.53148 -14.40438 -14.05337 -14.01793 -13.64908 -13.28217 -13.18937 -12.67118 -12.51781 -12.38691 -12.10192 -12.06279 -12.00832 -11.86096 -11.73598 -11.44580 -11.37208 -11.10540 -10.89071 -10.86751 -10.68082 -10.57990 -10.39113 -10.18020 -9.81786 -9.68301 -9.52958 -9.27243 -9.21637 -8.79322 -8.40696 -6.05994 -4.08603 1.19499 1.65706 1.92777 2.06175 2.32935 2.83310 3.25591 3.29014 3.34071 3.36255 3.83043 3.86906 4.01026 4.24155 4.38902 4.43410 4.45473 4.50351 4.53940 4.60557 4.77081 4.81397 4.86359 4.90761 4.97157 5.10376 5.14429 5.17199 5.29000 5.30233 5.38140 5.46557 5.48404 5.49022 5.75712 5.79433 5.83378 5.92458 6.01024 6.04563 6.13348 6.25040 6.46975 6.54978 6.67907 6.95717 7.05708 7.58192 7.71189 7.92644 8.19658 8.34650 8.73967 8.97527 9.55786 11.05161 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.002196 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.694979 B =12749.672538 C =12978.350451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.459 5.459 4 C 0.213 3.787 5 C -0.038 4.038 6 C -0.102 4.102 7 C 0.023 3.977 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 N -0.291 5.291 17 N -0.307 5.307 18 C 0.325 3.675 19 N -0.464 5.464 20 C 0.062 3.938 21 C -0.132 4.132 22 C 0.112 3.888 23 N -0.281 5.281 24 N -0.084 5.084 25 N -0.276 5.276 26 C -0.033 4.033 27 C -0.011 4.011 28 C 0.147 3.853 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.262 0.738 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.189 0.811 48 H 0.109 0.891 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -0.213 24.880 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 N -0.152 5.152 4 C -0.054 4.054 5 C -0.078 4.078 6 C -0.141 4.141 7 C -0.014 4.014 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.203 1.203 16 N -0.131 5.131 17 N -0.152 5.152 18 C -0.031 4.031 19 N -0.189 5.189 20 C -0.065 4.065 21 C -0.171 4.171 22 C -0.008 4.008 23 N -0.077 5.077 24 N -0.063 5.063 25 N -0.141 5.141 26 C -0.191 4.191 27 C -0.144 4.144 28 C 0.019 3.981 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.135 0.865 46 H 0.123 0.877 47 H 0.206 0.794 48 H 0.127 0.873 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.645 -0.014 26.084 26.217 hybrid contribution -1.014 0.093 -1.461 1.781 sum 1.632 0.079 24.622 24.676 Atomic orbital electron populations 1.22157 0.93585 1.03563 1.03318 1.21868 0.96164 0.78564 1.04852 1.46472 1.48539 1.13867 1.06298 1.25396 0.98898 0.88810 0.92270 1.20417 1.02519 1.01352 0.83513 1.21678 0.91963 1.01136 0.99309 1.19091 0.97399 0.96529 0.88353 1.21157 0.99362 1.39316 0.96181 0.92839 1.25001 0.96832 0.95174 0.97319 1.69941 1.33191 1.41513 1.08690 0.86672 0.84311 0.78851 0.78254 1.20200 1.21240 1.20306 1.74096 1.20245 1.16602 1.02135 1.74555 1.18643 1.17394 1.04559 1.21787 1.05863 0.88329 0.87134 1.57056 1.05579 1.59763 0.96522 1.21300 0.91715 0.95738 0.97762 1.21799 0.99015 1.04415 0.91826 1.22776 0.86958 0.89282 1.01799 1.47570 1.21537 1.22663 1.15925 1.78276 1.14336 0.98685 1.14982 1.75380 1.04586 1.21406 1.12726 1.23150 1.03408 0.95912 0.96632 1.21883 0.94363 1.02634 0.95511 1.20904 0.92290 0.96481 0.88443 0.90912 0.90233 0.92276 0.88630 0.88237 0.88292 0.90256 0.93468 0.92475 0.96151 0.96483 0.92877 0.92874 0.89903 0.89487 0.87463 0.86509 0.87696 0.79354 0.87321 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.11 1.06 6.79 -4.04 -0.03 1.03 16 3 N -0.46 -5.77 2.81 -114.09 -0.32 -6.09 16 4 C 0.21 3.25 7.32 -154.01 -1.13 2.12 16 5 C -0.04 -0.59 5.58 -27.88 -0.16 -0.75 16 6 C -0.10 -1.94 5.13 -26.73 -0.14 -2.08 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 9 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 12 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 N -0.29 -4.99 12.18 32.99 0.40 -4.59 16 17 N -0.31 -4.69 12.12 30.31 0.37 -4.33 16 18 C 0.32 4.01 6.14 -318.88 -1.96 2.05 16 19 N -0.46 -4.21 4.37 -177.68 -0.78 -4.99 16 20 C 0.06 0.45 4.79 -5.99 -0.03 0.42 16 21 C -0.13 -0.62 5.83 -27.42 -0.16 -0.78 16 22 C 0.11 0.52 6.76 -3.00 -0.02 0.50 16 23 N -0.28 -2.40 3.40 -55.86 -0.19 -2.59 16 24 N -0.08 -0.96 13.25 60.35 0.80 -0.16 16 25 N -0.28 -3.37 12.43 30.13 0.37 -2.99 16 26 C -0.03 -0.32 12.04 -17.88 -0.22 -0.53 16 27 C -0.01 -0.10 6.27 -82.19 -0.52 -0.61 16 28 C 0.15 1.18 5.50 -4.13 -0.02 1.16 16 29 H 0.07 0.86 6.86 -51.93 -0.36 0.51 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.92 7.10 -51.93 -0.37 0.55 16 34 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.08 1.08 7.18 -51.93 -0.37 0.71 16 36 H 0.05 0.87 6.86 -51.93 -0.36 0.51 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.05 0.37 7.56 -51.93 -0.39 -0.02 16 42 H 0.08 0.71 7.81 -51.93 -0.41 0.30 16 43 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.32 7.88 -51.93 -0.41 -0.09 16 47 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.11 0.89 7.87 -51.93 -0.41 0.48 16 49 H 0.08 0.56 7.77 -51.93 -0.40 0.15 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -34.36 398.97 -9.81 -44.17 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.66 Total: -4.01 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -4.54 Total: -11.28 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 1.39 Total: -51.01 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.36 -9.81 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340093399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.745 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds