Wall clock time and date at job start Wed Apr 1 2020 03:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.28356 * 2 1 4 4 C 1.54376 * 110.32536 * 122.23335 * 2 1 3 5 5 N 1.48556 * 104.59512 * 142.75065 * 4 2 1 6 6 C 1.38536 * 111.00171 * 200.95831 * 5 4 2 7 7 N 1.31256 * 126.37768 * 0.03250 * 6 5 4 8 8 N 1.28510 * 110.09715 * 179.97438 * 7 6 5 9 9 C 1.31221 * 109.95893 * 359.97438 * 8 7 6 10 10 C 1.47947 * 126.47409 * 180.02562 * 9 8 7 11 11 C 1.36708 * 126.93328 * 359.69236 * 10 9 8 12 12 N 1.35204 * 106.01655 * 179.85058 * 11 10 9 13 13 C 1.46503 * 125.73292 * 180.14903 * 12 11 10 14 14 C 1.52999 * 109.47015 * 125.33882 * 13 12 11 15 15 C 1.50698 * 109.47035 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00119 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47218 * 59.99604 * 19 17 15 21 21 H 1.48500 * 109.47630 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47035 * 299.99881 * 19 17 15 23 23 N 1.28647 * 108.54000 * 0.41746 * 12 11 10 24 24 N 1.28607 * 110.54075 * 359.73728 * 23 12 11 25 25 N 1.36600 * 126.38288 * 179.70972 * 6 5 4 26 26 C 1.46503 * 127.17093 * 0.02942 * 25 6 5 27 27 C 1.48717 * 104.28856 * 320.57496 * 5 4 2 28 28 C 1.54255 * 110.32648 * 237.87539 * 2 1 3 29 29 H 1.08992 * 110.32679 * 122.10557 * 28 2 1 30 30 C 1.53006 * 110.32458 * 359.97438 * 28 2 1 31 31 H 1.08997 * 109.46959 * 182.12876 * 1 2 3 32 32 H 1.09001 * 109.47274 * 302.12535 * 1 2 3 33 33 H 1.09001 * 109.47319 * 62.12927 * 1 2 3 34 34 H 1.09001 * 110.41087 * 261.53479 * 4 2 1 35 35 H 1.08998 * 110.41141 * 23.85363 * 4 2 1 36 36 H 1.07993 * 126.99075 * 359.97013 * 11 10 9 37 37 H 1.08996 * 109.47152 * 245.33587 * 13 12 11 38 38 H 1.08999 * 109.46882 * 5.34219 * 13 12 11 39 39 H 1.09004 * 109.47310 * 300.00342 * 14 13 12 40 40 H 1.08997 * 109.47359 * 60.00008 * 14 13 12 41 41 H 0.97000 * 120.00485 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47414 * 89.99641 * 26 25 6 43 43 H 1.09002 * 109.46707 * 209.99772 * 26 25 6 44 44 H 1.08999 * 109.47298 * 329.99540 * 26 25 6 45 45 H 1.09003 * 110.39121 * 280.64063 * 27 5 4 46 46 H 1.09002 * 110.51066 * 158.14408 * 27 5 4 47 47 H 1.09001 * 109.47002 * 61.42712 * 30 28 2 48 48 H 1.08993 * 109.46955 * 181.43149 * 30 28 2 49 49 H 1.09000 * 109.47050 * 301.42978 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0662 -0.7721 1.2245 5 7 3.2694 -1.4834 0.7211 6 6 3.5877 -2.5581 1.5353 7 7 2.9427 -2.9352 2.6144 8 7 3.5067 -3.9698 3.1271 9 6 4.5465 -4.3168 2.4057 10 6 5.4562 -5.4545 2.6644 11 6 5.3847 -6.3445 3.6996 12 7 6.4140 -7.2036 3.5247 13 6 6.7390 -8.3377 4.3934 14 6 6.8102 -9.6168 3.5570 15 6 7.1438 -10.7834 4.4507 16 1 7.2908 -10.6280 5.5093 17 6 7.2614 -12.0492 3.9169 18 7 7.0819 -12.2386 2.6279 19 14 7.6742 -13.4955 5.0247 20 1 6.6221 -13.6401 6.0627 21 1 7.7422 -14.7372 4.2131 22 1 8.9861 -13.2589 5.6793 23 7 7.0635 -6.8546 2.4706 24 7 6.5250 -5.8188 1.9310 25 7 4.6277 -3.4265 1.3611 26 6 5.6235 -3.4108 0.2867 27 6 2.8823 -1.9415 -0.6398 28 6 2.0659 -0.7692 -1.2250 29 1 2.7067 -0.1245 -1.8263 30 6 0.9050 -1.2998 -2.0688 31 1 -0.3633 -1.0269 0.0382 32 1 -0.3634 0.5465 0.8703 33 1 -0.3634 0.4804 -0.9085 34 1 2.3393 -0.0797 2.0208 35 1 1.3222 -1.4848 1.5802 36 1 4.6536 -6.3596 4.4943 37 1 7.7019 -8.1634 4.8734 38 1 5.9670 -8.4444 5.1555 39 1 5.8472 -9.7911 3.0769 40 1 7.5820 -9.5101 2.7948 41 1 7.1649 -13.1291 2.2523 42 1 6.4735 -2.7986 0.5880 43 1 5.9606 -4.4283 0.0888 44 1 5.1774 -2.9938 -0.6162 45 1 2.2675 -2.8394 -0.5777 46 1 3.7685 -2.1277 -1.2465 47 1 0.3088 -0.4633 -2.4334 48 1 1.2986 -1.8618 -2.9157 49 1 0.2806 -1.9522 -1.4584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340142582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:23 Heat of formation + Delta-G solvation = 182.864953 kcal Electronic energy + Delta-G solvation = -29592.618129 eV Core-core repulsion = 25593.597949 eV Total energy + Delta-G solvation = -3999.020180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.17740 -42.75896 -39.92860 -35.42644 -35.21911 -34.54862 -32.96478 -31.79782 -31.27247 -30.10811 -29.04949 -27.77954 -26.41840 -26.19637 -25.66707 -23.67266 -22.87590 -22.44605 -21.35057 -20.72991 -20.16320 -19.26700 -17.67166 -17.15648 -17.01196 -16.51051 -16.19383 -15.90823 -15.81030 -15.30627 -14.66931 -14.57418 -14.55763 -14.23922 -14.07331 -13.55553 -13.41730 -13.21843 -12.96747 -12.70315 -12.57988 -12.49272 -12.11496 -11.96389 -11.87715 -11.73037 -11.48232 -11.22545 -11.19439 -11.05563 -10.96239 -10.95088 -10.75542 -10.69299 -10.56083 -10.27329 -10.18487 -10.09341 -9.52388 -9.47598 -9.30172 -8.56642 -8.17762 -6.20877 -4.28004 1.22112 1.96886 2.03859 2.37954 2.74719 3.21003 3.22575 3.28223 3.29536 3.44521 3.91126 3.97245 4.07406 4.29744 4.36472 4.50375 4.63205 4.74559 4.83750 4.90720 4.95728 5.02237 5.05918 5.08301 5.13563 5.16223 5.16565 5.22517 5.30113 5.32940 5.43390 5.45359 5.55542 5.61301 5.69394 5.71628 5.77380 5.79924 5.84147 5.92082 5.97002 6.03500 6.15889 6.23630 6.39551 6.79728 6.95733 7.33319 7.42271 7.72870 8.04540 8.60419 8.69671 8.76817 9.37943 10.90035 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.001803 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.966966 B =15526.827152 C =15659.096958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.084 0.916 4 C 0.055 3.945 5 N -0.430 5.430 6 C 0.345 3.655 7 N -0.313 5.313 8 N -0.268 5.268 9 C 0.280 3.720 10 C 0.022 3.978 11 C 0.005 3.995 12 N -0.265 5.265 13 C 0.109 3.891 14 C 0.015 3.985 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.057 5.057 24 N -0.272 5.272 25 N -0.466 5.466 26 C 0.076 3.924 27 C 0.035 3.965 28 C -0.090 4.090 29 H 0.085 0.915 30 C -0.148 4.148 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.199 0.801 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.025 0.975 40 H 0.038 0.962 41 H 0.265 0.735 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 24.707 -7.558 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.103 0.897 4 C -0.072 4.072 5 N -0.154 5.154 6 C -0.012 4.012 7 N -0.159 5.159 8 N -0.110 5.110 9 C 0.013 3.987 10 C -0.117 4.117 11 C -0.150 4.150 12 N -0.057 5.057 13 C -0.009 4.009 14 C -0.023 4.023 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.728 3.272 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 N -0.038 5.038 24 N -0.141 5.141 25 N -0.159 5.159 26 C -0.066 4.066 27 C -0.092 4.092 28 C -0.109 4.109 29 H 0.104 0.896 30 C -0.205 4.205 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.994 24.541 -7.551 27.553 hybrid contribution -0.111 -1.171 0.301 1.214 sum -10.105 23.370 -7.250 26.473 Atomic orbital electron populations 1.21952 0.94070 1.02330 1.02047 1.21978 0.96183 0.99753 0.93430 0.89717 1.23190 0.89221 0.97289 0.97468 1.62191 1.35748 1.15691 1.01720 1.22645 0.89449 0.91747 0.97319 1.74533 1.23201 1.09268 1.08883 1.74298 1.05557 1.08098 1.23059 1.20967 0.97183 0.92572 0.87998 1.18354 0.98061 0.97532 0.97782 1.23521 0.96220 0.92582 1.02721 1.47933 1.17703 1.21412 1.18614 1.22914 1.02721 0.83242 0.92029 1.19424 0.99169 0.88070 0.95658 1.20881 1.50201 0.91807 0.94352 0.92039 1.24995 0.94782 0.99103 0.95127 1.69956 1.48184 1.22908 1.11310 0.86522 0.79091 0.81314 0.80311 1.20033 1.21117 1.19985 1.78258 1.18926 1.08799 0.97773 1.75239 1.07181 1.07729 1.23927 1.45986 1.23955 1.23093 1.22895 1.22283 0.90474 1.06247 0.87635 1.23474 0.99762 0.97919 0.88028 1.21917 0.96774 0.95802 0.96424 0.89643 1.21966 0.97713 1.01344 0.99502 0.92117 0.92393 0.91900 0.89054 0.90765 0.78383 0.88696 0.88169 0.95668 0.94342 0.92484 0.89899 0.87446 0.89655 0.92311 0.89280 0.91695 0.92568 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 7.94 37.16 0.29 -0.46 16 2 C -0.09 -0.58 3.65 -89.24 -0.33 -0.90 16 3 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 4 C 0.06 0.49 5.64 -2.19 -0.01 0.48 16 5 N -0.43 -4.44 5.42 -169.92 -0.92 -5.36 16 6 C 0.34 4.67 7.00 -318.68 -2.23 2.44 16 7 N -0.31 -4.96 10.96 30.34 0.33 -4.63 16 8 N -0.27 -4.55 12.21 32.60 0.40 -4.15 16 9 C 0.28 4.52 7.94 -153.82 -1.22 3.30 16 10 C 0.02 0.37 7.06 -83.21 -0.59 -0.21 16 11 C 0.01 0.08 11.54 -16.62 -0.19 -0.11 16 12 N -0.26 -4.76 3.43 -60.93 -0.21 -4.97 16 13 C 0.11 1.97 6.39 -4.04 -0.03 1.94 16 14 C 0.01 0.35 5.10 -27.88 -0.14 0.21 16 15 C -0.53 -13.78 9.11 -34.44 -0.31 -14.09 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 19 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 23 N -0.06 -1.13 12.87 60.35 0.78 -0.35 16 24 N -0.27 -4.93 10.77 33.01 0.36 -4.58 16 25 N -0.47 -6.44 3.23 -122.01 -0.39 -6.83 16 26 C 0.08 0.81 10.79 59.85 0.65 1.45 16 27 C 0.04 0.28 5.46 -2.09 -0.01 0.27 16 28 C -0.09 -0.53 3.65 -89.24 -0.33 -0.86 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 C -0.15 -0.75 7.93 37.16 0.29 -0.45 16 31 H 0.06 0.35 6.71 -51.93 -0.35 0.00 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.26 6.84 -51.93 -0.36 -0.09 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 36 H 0.20 2.53 8.06 -52.49 -0.42 2.11 16 37 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.10 1.55 8.06 -51.93 -0.42 1.13 16 39 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.11 1.27 6.71 -51.93 -0.35 0.92 16 44 H 0.08 0.68 5.53 -51.93 -0.29 0.39 16 45 H 0.06 0.54 7.68 -51.93 -0.40 0.15 16 46 H 0.09 0.62 6.11 -51.93 -0.32 0.30 16 47 H 0.06 0.27 6.88 -51.93 -0.36 -0.09 16 48 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.06 0.35 6.69 -51.93 -0.35 0.00 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -31.85 393.39 -9.59 -41.44 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.32 Total: -1.77 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -4.25 Total: -5.38 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 1.07 Total: -55.61 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.85 -9.59 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340142582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.305 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds