Wall clock time and date at job start Wed Apr 1 2020 03:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.28356 * 2 1 4 4 C 1.54376 * 110.32536 * 122.23335 * 2 1 3 5 5 N 1.48556 * 104.59512 * 142.75065 * 4 2 1 6 6 C 1.38536 * 111.00171 * 200.95831 * 5 4 2 7 7 N 1.31256 * 126.37768 * 0.03250 * 6 5 4 8 8 N 1.28510 * 110.09715 * 179.97438 * 7 6 5 9 9 C 1.31221 * 109.95893 * 359.97438 * 8 7 6 10 10 C 1.47947 * 126.47409 * 180.02562 * 9 8 7 11 11 C 1.36708 * 126.93328 * 359.69236 * 10 9 8 12 12 N 1.35204 * 106.01655 * 179.85058 * 11 10 9 13 13 C 1.46503 * 125.73292 * 180.14903 * 12 11 10 14 14 C 1.52999 * 109.47015 * 125.33882 * 13 12 11 15 15 C 1.50698 * 109.47035 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00119 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47218 * 59.99604 * 19 17 15 21 21 H 1.48500 * 109.47630 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47035 * 299.99881 * 19 17 15 23 23 N 1.28647 * 108.54000 * 0.41746 * 12 11 10 24 24 N 1.28607 * 110.54075 * 359.73728 * 23 12 11 25 25 N 1.36600 * 126.38288 * 179.70972 * 6 5 4 26 26 C 1.46503 * 127.17093 * 0.02942 * 25 6 5 27 27 C 1.48717 * 104.28856 * 320.57496 * 5 4 2 28 28 C 1.54255 * 110.32648 * 237.87539 * 2 1 3 29 29 H 1.08992 * 110.32679 * 122.10557 * 28 2 1 30 30 C 1.53006 * 110.32458 * 359.97438 * 28 2 1 31 31 H 1.08997 * 109.46959 * 182.12876 * 1 2 3 32 32 H 1.09001 * 109.47274 * 302.12535 * 1 2 3 33 33 H 1.09001 * 109.47319 * 62.12927 * 1 2 3 34 34 H 1.09001 * 110.41087 * 261.53479 * 4 2 1 35 35 H 1.08998 * 110.41141 * 23.85363 * 4 2 1 36 36 H 1.07993 * 126.99075 * 359.97013 * 11 10 9 37 37 H 1.08996 * 109.47152 * 245.33587 * 13 12 11 38 38 H 1.08999 * 109.46882 * 5.34219 * 13 12 11 39 39 H 1.09004 * 109.47310 * 300.00342 * 14 13 12 40 40 H 1.08997 * 109.47359 * 60.00008 * 14 13 12 41 41 H 0.97000 * 120.00485 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47414 * 89.99641 * 26 25 6 43 43 H 1.09002 * 109.46707 * 209.99772 * 26 25 6 44 44 H 1.08999 * 109.47298 * 329.99540 * 26 25 6 45 45 H 1.09003 * 110.39121 * 280.64063 * 27 5 4 46 46 H 1.09002 * 110.51066 * 158.14408 * 27 5 4 47 47 H 1.09001 * 109.47002 * 61.42712 * 30 28 2 48 48 H 1.08993 * 109.46955 * 181.43149 * 30 28 2 49 49 H 1.09000 * 109.47050 * 301.42978 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0662 -0.7721 1.2245 5 7 3.2694 -1.4834 0.7211 6 6 3.5877 -2.5581 1.5353 7 7 2.9427 -2.9352 2.6144 8 7 3.5067 -3.9698 3.1271 9 6 4.5465 -4.3168 2.4057 10 6 5.4562 -5.4545 2.6644 11 6 5.3847 -6.3445 3.6996 12 7 6.4140 -7.2036 3.5247 13 6 6.7390 -8.3377 4.3934 14 6 6.8102 -9.6168 3.5570 15 6 7.1438 -10.7834 4.4507 16 1 7.2908 -10.6280 5.5093 17 6 7.2614 -12.0492 3.9169 18 7 7.0819 -12.2386 2.6279 19 14 7.6742 -13.4955 5.0247 20 1 6.6221 -13.6401 6.0627 21 1 7.7422 -14.7372 4.2131 22 1 8.9861 -13.2589 5.6793 23 7 7.0635 -6.8546 2.4706 24 7 6.5250 -5.8188 1.9310 25 7 4.6277 -3.4265 1.3611 26 6 5.6235 -3.4108 0.2867 27 6 2.8823 -1.9415 -0.6398 28 6 2.0659 -0.7692 -1.2250 29 1 2.7067 -0.1245 -1.8263 30 6 0.9050 -1.2998 -2.0688 31 1 -0.3633 -1.0269 0.0382 32 1 -0.3634 0.5465 0.8703 33 1 -0.3634 0.4804 -0.9085 34 1 2.3393 -0.0797 2.0208 35 1 1.3222 -1.4848 1.5802 36 1 4.6536 -6.3596 4.4943 37 1 7.7019 -8.1634 4.8734 38 1 5.9670 -8.4444 5.1555 39 1 5.8472 -9.7911 3.0769 40 1 7.5820 -9.5101 2.7948 41 1 7.1649 -13.1291 2.2523 42 1 6.4735 -2.7986 0.5880 43 1 5.9606 -4.4283 0.0888 44 1 5.1774 -2.9938 -0.6162 45 1 2.2675 -2.8394 -0.5777 46 1 3.7685 -2.1277 -1.2465 47 1 0.3088 -0.4633 -2.4334 48 1 1.2986 -1.8618 -2.9157 49 1 0.2806 -1.9522 -1.4584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340142582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:22 Heat of formation + Delta-G solvation = 165.292803 kcal Electronic energy + Delta-G solvation = -29593.380114 eV Core-core repulsion = 25593.597949 eV Total energy + Delta-G solvation = -3999.782165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.46059 -43.97144 -40.60664 -36.90967 -36.22340 -35.49578 -34.77667 -33.03796 -31.85122 -31.79769 -30.16069 -28.74722 -27.46712 -27.03698 -26.84344 -24.91378 -24.34829 -23.39942 -22.65516 -21.77204 -21.48963 -19.83886 -19.04434 -18.49405 -17.90419 -17.72111 -17.52473 -17.16485 -16.83965 -16.52165 -16.40656 -15.54144 -15.37380 -15.15229 -15.01982 -14.81743 -14.34721 -14.30889 -14.01426 -13.67707 -13.57554 -13.38370 -13.18354 -13.08232 -12.89780 -12.72900 -12.69461 -12.63476 -12.42383 -12.37833 -12.22449 -11.96534 -11.77369 -11.67953 -11.51668 -11.48967 -11.42315 -11.29454 -11.21386 -10.99999 -10.60989 -10.40661 -9.32153 -8.25471 -6.39139 0.03911 0.63195 0.96184 1.18912 1.38634 1.46264 1.46551 1.54404 1.95066 2.40021 2.48336 2.74963 3.10387 3.33827 3.41174 3.47962 3.64849 3.74433 3.89607 3.95458 4.03192 4.12004 4.20131 4.23923 4.26082 4.31650 4.45197 4.51903 4.55697 4.57973 4.61616 4.64692 4.69055 4.73093 4.80242 4.85386 4.86641 4.91655 5.11469 5.20669 5.24900 5.27409 5.27966 5.35218 5.38699 5.43932 5.47886 5.61839 5.74333 5.96356 6.04536 6.76968 7.27272 7.32115 7.46860 8.86674 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.001803 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.966966 B =15526.827152 C =15659.096958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.098 0.902 4 C 0.052 3.948 5 N -0.429 5.429 6 C 0.358 3.642 7 N -0.340 5.340 8 N -0.284 5.284 9 C 0.263 3.737 10 C 0.017 3.983 11 C 0.017 3.983 12 N -0.270 5.270 13 C 0.122 3.878 14 C 0.022 3.978 15 C -0.543 4.543 16 H 0.082 0.918 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.264 1.264 23 N -0.097 5.097 24 N -0.273 5.273 25 N -0.467 5.467 26 C 0.074 3.926 27 C 0.032 3.968 28 C -0.083 4.083 29 H 0.101 0.899 30 C -0.146 4.146 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.134 0.866 39 H -0.006 1.006 40 H 0.002 0.998 41 H 0.264 0.736 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.044 0.956 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 26.303 -7.115 29.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.116 0.884 4 C -0.075 4.075 5 N -0.153 5.153 6 C 0.001 3.999 7 N -0.186 5.186 8 N -0.127 5.127 9 C -0.005 4.005 10 C -0.123 4.123 11 C -0.138 4.138 12 N -0.062 5.062 13 C 0.004 3.996 14 C -0.016 4.016 15 C -0.581 4.581 16 H 0.100 0.900 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.189 1.189 23 N -0.077 5.077 24 N -0.142 5.142 25 N -0.160 5.160 26 C -0.067 4.067 27 C -0.094 4.094 28 C -0.102 4.102 29 H 0.119 0.881 30 C -0.203 4.203 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.248 0.752 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.012 0.988 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.063 0.937 46 H 0.120 0.880 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.563 26.159 -7.113 29.094 hybrid contribution 0.007 -1.524 0.084 1.526 sum -10.556 24.635 -7.029 27.708 Atomic orbital electron populations 1.21939 0.93292 1.01986 1.02936 1.21981 0.96743 0.99879 0.91969 0.88414 1.23278 0.88349 0.96957 0.98891 1.62341 1.36402 1.14255 1.02314 1.23007 0.88597 0.91511 0.96807 1.74475 1.24112 1.09684 1.10341 1.74207 1.05937 1.08722 1.23802 1.20878 0.97369 0.93151 0.89068 1.18562 0.97863 0.97995 0.97865 1.24044 0.95516 0.91324 1.02925 1.47846 1.18225 1.21692 1.18430 1.22708 1.05009 0.80693 0.91193 1.19174 0.96080 0.91020 0.95367 1.21420 1.48797 0.92332 0.95532 0.89998 1.26005 0.94799 1.02485 0.96413 1.70116 1.50100 1.23439 1.13517 0.85397 0.79426 0.77268 0.78342 1.18683 1.21604 1.18862 1.78249 1.20408 1.09922 0.99081 1.75195 1.07593 1.07361 1.24003 1.46151 1.24368 1.22604 1.22892 1.22463 0.90488 1.05872 0.87913 1.23613 1.00527 0.98407 0.86826 1.21944 0.96959 0.94944 0.96397 0.88059 1.21955 0.97373 1.01736 0.99240 0.93041 0.92255 0.90325 0.89329 0.92394 0.75192 0.87175 0.84782 0.98799 0.97955 0.92693 0.88950 0.88776 0.86860 0.93741 0.87956 0.90254 0.92257 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.94 71.98 0.57 -0.65 16 2 C -0.09 -0.88 3.65 -9.90 -0.04 -0.91 16 3 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 4 C 0.05 0.88 5.64 86.45 0.49 1.36 16 5 N -0.43 -8.37 5.42 -691.52 -3.75 -12.11 16 6 C 0.36 9.53 7.00 260.05 1.82 11.35 16 7 N -0.34 -10.82 10.96 -57.92 -0.63 -11.46 16 8 N -0.28 -9.66 12.21 -50.78 -0.62 -10.28 16 9 C 0.26 8.49 7.94 136.28 1.08 9.57 16 10 C 0.02 0.58 7.06 40.93 0.29 0.86 16 11 C 0.02 0.54 11.54 83.82 0.97 1.51 16 12 N -0.27 -9.64 3.43 -346.69 -1.19 -10.83 16 13 C 0.12 4.29 6.39 86.38 0.55 4.84 16 14 C 0.02 1.05 5.10 29.85 0.15 1.20 16 15 C -0.54 -27.85 9.11 25.60 0.23 -27.62 16 16 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 17 C 0.00 0.09 5.46 84.65 0.46 0.56 16 18 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 19 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 N -0.10 -3.88 12.87 37.02 0.48 -3.41 16 24 N -0.27 -10.04 10.77 -49.48 -0.53 -10.57 16 25 N -0.47 -12.72 3.23 -539.92 -1.75 -14.46 16 26 C 0.07 1.50 10.79 127.77 1.38 2.88 16 27 C 0.03 0.47 5.46 86.42 0.47 0.94 16 28 C -0.08 -0.78 3.65 -9.90 -0.04 -0.82 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 C -0.15 -1.15 7.93 71.98 0.57 -0.58 16 31 H 0.05 0.54 6.71 -2.39 -0.02 0.53 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.44 6.84 -2.39 -0.02 0.42 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.19 7.11 -2.39 -0.02 1.17 16 36 H 0.23 5.40 8.06 -2.91 -0.02 5.38 16 37 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.13 3.79 8.06 -2.39 -0.02 3.77 16 39 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 40 H 0.00 0.11 8.11 -2.39 -0.02 0.09 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 2.22 6.71 -2.39 -0.02 2.20 16 44 H 0.11 1.60 5.53 -2.39 -0.01 1.59 16 45 H 0.04 0.79 7.68 -2.39 -0.02 0.77 16 46 H 0.10 1.19 6.11 -2.39 -0.01 1.17 16 47 H 0.08 0.42 6.88 -2.39 -0.02 0.40 16 48 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.05 0.52 6.69 -2.39 -0.02 0.50 16 Total: -1.00 -71.35 393.39 4.25 -67.10 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.97 Total: 12.68 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 8.97 Total: 4.50 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -7.71 Total: -127.96 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -71.35 4.25 -67.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340142582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.388 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds