Wall clock time and date at job start Wed Apr 1 2020 03:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00210 * 2 1 4 4 C 1.50707 * 119.99602 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.47190 * 94.94687 * 4 2 1 6 6 C 1.36737 * 127.13533 * 265.97825 * 5 4 2 7 7 C 1.50699 * 126.35192 * 359.96303 * 6 5 4 8 8 C 1.52996 * 109.46913 * 265.02773 * 7 6 5 9 9 C 1.50711 * 109.46796 * 184.44467 * 8 7 6 10 10 H 1.07994 * 120.00025 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99794 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00370 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00162 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46788 * 59.99785 * 13 11 9 15 15 H 1.48494 * 109.47498 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46730 * 300.00412 * 13 11 9 17 17 N 1.30301 * 107.30564 * 179.97438 * 6 5 4 18 18 N 1.28531 * 110.05109 * 0.02562 * 17 6 5 19 19 C 1.31224 * 109.86182 * 359.97438 * 18 17 6 20 20 N 1.38572 * 126.47489 * 180.02562 * 19 18 17 21 21 C 1.46904 * 111.00124 * 255.90046 * 20 19 18 22 22 C 1.46910 * 111.00028 * 19.84857 * 20 19 18 23 23 C 1.50697 * 109.47162 * 170.00107 * 22 20 19 24 24 C 1.35345 * 126.75234 * 94.71471 * 23 22 20 25 25 N 1.35319 * 106.17798 * 179.85511 * 24 23 22 26 26 C 1.46496 * 125.86987 * 180.12047 * 25 24 23 27 27 N 1.28710 * 108.25903 * 0.41423 * 25 24 23 28 28 N 1.28635 * 110.18393 * 359.73931 * 27 25 24 29 29 H 1.08003 * 119.99586 * 4.18277 * 1 2 3 30 30 H 1.07994 * 120.00171 * 184.18540 * 1 2 3 31 31 H 1.09001 * 109.47434 * 244.79762 * 3 2 1 32 32 H 1.08992 * 109.46980 * 4.80217 * 3 2 1 33 33 H 1.09005 * 109.46931 * 124.79884 * 3 2 1 34 34 H 1.08995 * 109.46779 * 334.94558 * 4 2 1 35 35 H 1.09001 * 109.46837 * 214.94812 * 4 2 1 36 36 H 1.09000 * 109.46834 * 25.02898 * 7 6 5 37 37 H 1.08996 * 109.47467 * 145.02628 * 7 6 5 38 38 H 1.08993 * 109.47411 * 304.44329 * 8 7 6 39 39 H 1.09004 * 109.47361 * 64.45074 * 8 7 6 40 40 H 0.97001 * 120.00161 * 180.02562 * 12 11 9 41 41 H 1.09001 * 109.46860 * 65.83897 * 21 20 19 42 42 H 1.08992 * 109.47249 * 185.83735 * 21 20 19 43 43 H 1.08997 * 109.46895 * 305.83858 * 21 20 19 44 44 H 1.08996 * 109.47355 * 290.00544 * 22 20 19 45 45 H 1.09002 * 109.46688 * 50.00365 * 22 20 19 46 46 H 1.07999 * 126.91052 * 359.97438 * 24 23 22 47 47 H 1.08994 * 109.47083 * 270.32324 * 26 25 24 48 48 H 1.09006 * 109.47262 * 30.32220 * 26 25 24 49 49 H 1.08999 * 109.47358 * 150.32216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4108 -1.6680 -1.3768 6 6 1.7023 -2.4775 -2.2209 7 6 0.4028 -3.1741 -1.9093 8 6 0.6896 -4.6002 -1.4351 9 6 -0.6116 -5.3318 -1.2279 10 1 -1.5491 -4.8297 -1.4152 11 6 -0.6049 -6.6422 -0.7991 12 7 0.5369 -7.2535 -0.5705 13 14 -2.2176 -7.5494 -0.5429 14 1 -2.9688 -7.5946 -1.8231 15 1 -1.9394 -8.9335 -0.0826 16 1 -3.0268 -6.8409 0.4810 17 7 2.3592 -2.5352 -3.3447 18 7 3.4265 -1.8232 -3.2684 19 6 3.5082 -1.2679 -2.0822 20 7 4.5179 -0.4329 -1.6312 21 6 5.4207 -1.1448 -0.7167 22 6 5.2610 0.1499 -2.7565 23 6 6.1795 1.2302 -2.2463 24 6 7.4851 1.0942 -1.9167 25 7 7.9020 2.3174 -1.5151 26 6 9.2534 2.6583 -1.0639 27 7 6.9054 3.1283 -1.5918 28 7 5.8631 2.5110 -2.0244 29 1 -0.5399 0.9329 -0.0682 30 1 -0.5400 -0.9327 0.0683 31 1 2.6242 1.4009 -0.9298 32 1 1.3584 2.1317 0.0860 33 1 2.7532 1.3264 0.8439 34 1 1.4388 -2.0854 0.4342 35 1 2.9746 -1.1990 0.5882 36 1 -0.1225 -2.6291 -1.1250 37 1 -0.2160 -3.2069 -2.8059 38 1 1.2833 -5.1205 -2.1866 39 1 1.2412 -4.5667 -0.4955 40 1 0.5415 -8.1755 -0.2692 41 1 5.9500 -1.9254 -1.2632 42 1 6.1411 -0.4425 -0.2975 43 1 4.8407 -1.5948 0.0890 44 1 5.8496 -0.6268 -3.2446 45 1 4.5593 0.5779 -3.4725 46 1 8.0759 0.1916 -1.9662 47 1 9.3247 2.5105 0.0137 48 1 9.9771 2.0172 -1.5672 49 1 9.4639 3.7009 -1.3023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343550821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:02 Heat of formation + Delta-G solvation = 206.366536 kcal Electronic energy + Delta-G solvation = -30496.392755 eV Core-core repulsion = 26498.391681 eV Total energy + Delta-G solvation = -3998.001075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55651 -42.58010 -37.80042 -36.71791 -34.96716 -34.09728 -33.13102 -32.09888 -31.38558 -28.78362 -28.61612 -27.53601 -27.43132 -26.80621 -25.42614 -24.67456 -22.38945 -21.97448 -21.54033 -20.61389 -19.95135 -18.68032 -17.53770 -17.17518 -16.79663 -16.48052 -16.08663 -15.95464 -15.27096 -15.08114 -14.68773 -14.52427 -14.33712 -14.01853 -13.80286 -13.65648 -13.36995 -13.17573 -13.07336 -12.94788 -12.49554 -12.30749 -12.20051 -11.92193 -11.84722 -11.69605 -11.44719 -11.27249 -11.07226 -11.02895 -10.94299 -10.69966 -10.39129 -10.33241 -10.05076 -9.86766 -9.71289 -9.56146 -9.23670 -9.19210 -9.11472 -8.39793 -8.02330 -6.04480 -4.08389 1.23575 1.86997 2.00044 2.11160 2.23599 2.87754 3.30507 3.31841 3.36629 3.39353 3.82678 3.97635 4.17451 4.42179 4.46082 4.51722 4.66394 4.72215 4.74343 4.76426 4.81787 5.03973 5.09451 5.20599 5.22375 5.31628 5.42578 5.43249 5.46491 5.58808 5.62933 5.66071 5.77817 5.80966 5.84971 5.86913 6.11285 6.19337 6.24938 6.37014 6.46798 6.56502 6.60437 6.71177 6.80181 6.96401 7.46030 7.56321 7.70887 7.93076 8.23769 8.30790 8.97434 9.22673 9.56086 11.06590 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002410 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.155958 B =11616.889287 C =12255.100527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C -0.110 4.110 4 C 0.147 3.853 5 N -0.465 5.465 6 C 0.219 3.781 7 C -0.032 4.032 8 C 0.033 3.967 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.288 1.288 16 H -0.277 1.277 17 N -0.294 5.294 18 N -0.321 5.321 19 C 0.333 3.667 20 N -0.448 5.448 21 C 0.025 3.975 22 C 0.159 3.841 23 C -0.009 4.009 24 C -0.042 4.042 25 N -0.296 5.296 26 C 0.081 3.919 27 N -0.088 5.088 28 N -0.246 5.246 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.013 0.987 40 H 0.262 0.738 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.190 0.810 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.151 19.461 3.577 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.167 4.167 4 C 0.024 3.976 5 N -0.159 5.159 6 C -0.049 4.049 7 C -0.072 4.072 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.133 5.133 18 N -0.165 5.165 19 C -0.024 4.024 20 N -0.172 5.172 21 C -0.123 4.123 22 C 0.031 3.969 23 C -0.148 4.148 24 C -0.194 4.194 25 N -0.089 5.089 26 C -0.060 4.060 27 N -0.068 5.068 28 N -0.113 5.113 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.207 0.793 47 H 0.110 0.890 48 H 0.117 0.883 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.966 20.775 2.713 26.959 hybrid contribution -0.113 -1.858 1.185 2.207 sum 16.852 18.917 3.898 25.633 Atomic orbital electron populations 1.23978 0.95108 1.02666 0.98509 1.21847 0.95539 0.95378 1.02188 1.20778 0.99732 0.93149 1.02991 1.20788 1.01267 0.95724 0.79773 1.46218 1.17874 1.38012 1.13752 1.25552 0.98651 0.94238 0.86422 1.20466 0.86766 0.97804 1.02137 1.19066 0.97580 0.87507 0.96405 1.21105 0.92371 0.97142 1.45537 0.92342 1.25004 0.96302 0.97567 0.95368 1.69959 1.25111 1.12196 1.45889 0.86623 0.83768 0.78751 0.78667 1.20064 1.21322 1.20212 1.74014 1.02244 1.17383 1.19635 1.74507 1.15423 1.10747 1.15870 1.22134 0.90820 0.98971 0.90465 1.58460 1.10831 1.29942 1.17976 1.22551 0.95983 0.97591 0.96142 1.20093 0.94397 0.92195 0.90252 1.21719 0.92944 0.94064 1.06087 1.23439 0.97495 0.91244 1.07242 1.47246 1.11650 1.07183 1.42839 1.22270 0.77138 1.04655 1.01938 1.78359 0.90629 1.18872 1.18914 1.75109 1.18179 1.04977 1.13042 0.87933 0.87601 0.90507 0.92433 0.91962 0.87541 0.88822 0.91379 0.89267 0.95532 0.96863 0.92847 0.93725 0.90312 0.90992 0.90747 0.87918 0.79259 0.89043 0.88274 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 13.90 29.01 0.40 -1.61 16 2 C -0.15 -1.89 5.64 -101.06 -0.57 -2.46 16 3 C -0.11 -1.30 10.12 36.00 0.36 -0.93 16 4 C 0.15 2.03 6.06 -5.19 -0.03 2.00 16 5 N -0.47 -7.85 2.79 -115.37 -0.32 -8.17 16 6 C 0.22 4.37 7.32 -154.01 -1.13 3.24 16 7 C -0.03 -0.65 5.40 -27.89 -0.15 -0.80 16 8 C 0.03 0.82 4.96 -27.88 -0.14 0.69 16 9 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 13 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 N -0.29 -6.41 12.18 32.99 0.40 -6.00 16 18 N -0.32 -6.27 11.48 30.31 0.35 -5.93 16 19 C 0.33 5.50 6.85 -318.88 -2.18 3.31 16 20 N -0.45 -5.75 4.67 -183.76 -0.86 -6.61 16 21 C 0.02 0.26 9.17 60.07 0.55 0.81 16 22 C 0.16 1.88 4.95 -4.97 -0.02 1.85 16 23 C -0.01 -0.10 5.98 -82.78 -0.49 -0.59 16 24 C -0.04 -0.32 10.59 -17.05 -0.18 -0.50 16 25 N -0.30 -2.24 3.74 -68.06 -0.25 -2.50 16 26 C 0.08 0.19 11.39 59.84 0.68 0.87 16 27 N -0.09 -1.01 13.16 60.35 0.79 -0.22 16 28 N -0.25 -3.23 12.41 33.29 0.41 -2.82 16 29 H 0.10 1.10 7.85 -52.48 -0.41 0.69 16 30 H 0.11 1.33 6.90 -52.49 -0.36 0.97 16 31 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.06 0.62 7.80 -51.93 -0.41 0.21 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 1.52 7.38 -51.93 -0.38 1.13 16 35 H 0.09 1.13 6.50 -51.93 -0.34 0.79 16 36 H 0.07 1.25 6.50 -51.93 -0.34 0.91 16 37 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 42 H 0.08 0.67 6.66 -51.93 -0.35 0.32 16 43 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 44 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 45 H 0.10 1.39 8.04 -51.93 -0.42 0.97 16 46 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 48 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 49 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 411.01 15.07 6.19 6.19 Total: -1.00 -35.86 411.01 -8.41 -44.27 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.52 Total: -1.59 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.31 Total: -7.12 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 1.26 Total: -57.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.86 -8.41 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343550821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.636 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds