Wall clock time and date at job start Wed Apr 1 2020 03:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00205 * 2 1 4 4 H 1.48504 * 109.47327 * 240.00599 * 3 2 1 5 5 H 1.48502 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47399 * 120.00267 * 3 2 1 7 7 C 1.37882 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47075 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47552 * 304.99882 * 11 10 9 13 13 N 1.46905 * 109.47055 * 65.00229 * 11 10 9 14 14 C 1.50703 * 109.47279 * 184.99981 * 11 10 9 15 15 O 1.21284 * 120.00064 * 260.00288 * 14 11 10 16 16 N 1.34780 * 120.00125 * 80.00033 * 14 11 10 17 17 C 1.46926 * 120.62756 * 359.72495 * 16 14 11 18 18 C 1.53620 * 108.54485 * 126.36690 * 17 16 14 19 19 C 1.53045 * 109.23913 * 54.85212 * 18 17 16 20 20 C 1.53002 * 109.44587 * 58.52586 * 19 18 17 21 21 N 1.46899 * 109.46928 * 175.14184 * 20 19 18 22 22 C 1.50704 * 109.45732 * 178.49044 * 19 18 17 23 23 C 1.38234 * 120.00024 * 115.50263 * 22 19 18 24 24 C 1.38229 * 120.00024 * 179.74764 * 23 22 19 25 25 C 1.38234 * 120.00256 * 0.52050 * 24 23 22 26 26 C 1.38240 * 119.99620 * 359.75284 * 25 24 23 27 27 C 1.38233 * 120.00057 * 359.97438 * 26 25 24 28 28 C 1.53034 * 109.54058 * 298.51094 * 19 18 17 29 29 C 1.46923 * 120.63171 * 180.02562 * 16 14 11 30 30 H 0.96993 * 119.99809 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46911 * 299.99741 * 9 7 2 32 32 H 1.09000 * 109.47672 * 59.99824 * 9 7 2 33 33 H 1.09000 * 109.47228 * 300.00109 * 10 9 7 34 34 H 1.09003 * 109.47222 * 60.00150 * 10 9 7 35 35 H 1.00897 * 110.99790 * 296.04643 * 13 11 10 36 36 H 1.00896 * 110.99911 * 59.99573 * 13 11 10 37 37 H 1.09001 * 109.58447 * 246.20188 * 17 16 14 38 38 H 1.08997 * 109.58558 * 6.62116 * 17 16 14 39 39 H 1.08997 * 109.63480 * 294.86329 * 18 17 16 40 40 H 1.08998 * 109.43052 * 174.72205 * 18 17 16 41 41 H 1.08989 * 109.47486 * 295.14420 * 20 19 18 42 42 H 1.09007 * 109.47140 * 55.14912 * 20 19 18 43 43 H 1.00904 * 110.99963 * 65.81006 * 21 20 19 44 44 H 1.00901 * 111.00520 * 189.76478 * 21 20 19 45 45 H 1.08005 * 119.99364 * 359.97438 * 23 22 19 46 46 H 1.08006 * 120.00080 * 180.29457 * 24 23 22 47 47 H 1.07998 * 120.00245 * 179.77345 * 25 24 23 48 48 H 1.07998 * 119.99783 * 180.02562 * 26 25 24 49 49 H 1.07997 * 120.00069 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.50161 * 301.41464 * 28 19 18 51 51 H 1.09007 * 109.49856 * 181.31436 * 28 19 18 52 52 H 1.09007 * 109.58654 * 353.37656 * 29 16 14 53 53 H 1.09007 * 109.58202 * 113.79886 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7884 -5.0068 0.8421 13 7 0.7281 -5.1188 -1.2549 14 6 2.4548 -6.1298 0.1239 15 8 2.7863 -6.7537 -0.8619 16 7 2.9581 -6.4586 1.3302 17 6 2.5707 -5.7084 2.5327 18 6 2.0566 -6.7030 3.5845 19 6 3.1217 -7.7745 3.8285 20 6 4.4165 -7.1081 4.2980 21 7 5.4017 -8.1415 4.6435 22 6 2.6374 -8.7319 4.8869 23 6 2.4069 -10.0568 4.5670 24 6 1.9677 -10.9362 5.5389 25 6 1.7487 -10.4883 6.8282 26 6 1.9738 -9.1620 7.1468 27 6 2.4184 -8.2839 6.1761 28 6 3.3843 -8.5403 2.5299 29 6 3.9096 -7.5698 1.4668 30 1 -0.4849 0.8400 0.0004 31 1 0.6247 -2.5571 0.8897 32 1 0.6240 -2.5568 -0.8902 33 1 2.8719 -3.6044 -0.8905 34 1 2.8719 -3.6044 0.8895 35 1 0.0233 -4.4008 -1.3311 36 1 1.3476 -5.1033 -2.0511 37 1 3.4359 -5.1732 2.9239 38 1 1.7821 -4.9989 2.2824 39 1 1.1415 -7.1746 3.2263 40 1 1.8532 -6.1735 4.5153 41 1 4.8126 -6.4809 3.4995 42 1 4.2117 -6.4938 5.1749 43 1 5.6794 -8.6640 3.8262 44 1 6.2035 -7.7373 5.1039 45 1 2.5736 -10.4057 3.5585 46 1 1.7922 -11.9724 5.2902 47 1 1.4020 -11.1745 7.5867 48 1 1.8030 -8.8122 8.1541 49 1 2.5946 -7.2479 6.4251 50 1 2.4567 -8.9947 2.1815 51 1 4.1260 -9.3186 2.7100 52 1 4.0047 -8.0888 0.5130 53 1 4.8816 -7.1829 1.7731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355330606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:53 Heat of formation + Delta-G solvation = -40.346560 kcal Electronic energy + Delta-G solvation = -31309.825709 eV Core-core repulsion = 27372.373944 eV Total energy + Delta-G solvation = -3937.451765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91005 -40.52824 -38.66008 -37.13204 -35.81367 -34.85401 -33.30030 -32.55323 -31.69973 -31.41080 -30.88098 -28.29536 -26.87769 -26.00550 -24.77965 -24.43897 -22.95026 -22.66225 -22.04001 -20.60228 -19.34499 -18.80542 -18.31385 -17.84560 -17.14201 -16.73923 -16.55130 -16.44657 -16.07862 -16.01556 -15.66528 -15.53336 -15.23786 -15.05071 -14.78545 -14.62343 -14.54109 -14.29770 -14.15273 -14.04879 -13.77972 -13.45946 -13.33187 -13.09549 -12.92339 -12.78806 -12.63209 -12.59410 -12.54997 -12.26625 -12.00879 -11.82582 -11.80281 -11.67770 -11.50089 -11.31167 -11.16384 -10.65263 -10.55293 -9.76826 -9.65409 -9.64440 -9.41355 -9.37385 -8.20998 -6.31309 0.64503 0.66410 1.39998 1.41395 1.49255 1.57633 1.93170 2.39980 3.03364 3.12683 3.42217 3.50716 3.64446 3.73566 3.81314 3.91611 4.05307 4.07381 4.15686 4.20239 4.24697 4.25670 4.27456 4.39514 4.39901 4.55421 4.59936 4.64863 4.69013 4.75598 4.80296 4.82671 4.85648 4.91902 4.93531 5.02133 5.07652 5.18181 5.25844 5.29205 5.31656 5.46327 5.55051 5.64890 5.74250 5.77038 5.80429 5.88305 6.04317 6.21026 6.26749 6.31730 6.35136 6.45785 6.66255 6.83690 7.14587 7.37715 8.89561 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002526 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.523224 B =11083.606054 C =11782.592484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.119 4.119 11 C 0.080 3.920 12 H 0.106 0.894 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.574 6.574 16 N -0.604 5.604 17 C 0.098 3.902 18 C -0.117 4.117 19 C -0.007 4.007 20 C 0.073 3.927 21 N -0.847 5.847 22 C -0.042 4.042 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.114 4.114 29 C 0.110 3.890 30 H 0.264 0.736 31 H 0.003 0.997 32 H 0.000 1.000 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.352 0.648 36 H 0.343 0.657 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.342 0.658 44 H 0.348 0.652 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.131 0.869 49 H 0.124 0.876 50 H 0.060 0.940 51 H 0.094 0.906 52 H 0.075 0.925 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.964 -19.756 14.937 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.159 4.159 11 C -0.035 4.035 12 H 0.124 0.876 13 N -0.362 5.362 14 C 0.315 3.685 15 O -0.453 6.453 16 N -0.337 5.337 17 C -0.024 4.024 18 C -0.155 4.155 19 C -0.008 4.008 20 C -0.058 4.058 21 N -0.378 5.378 22 C -0.042 4.042 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.158 4.158 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.153 4.153 29 C -0.012 4.012 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.149 0.851 49 H 0.142 0.858 50 H 0.079 0.921 51 H 0.112 0.888 52 H 0.093 0.907 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.189 -20.994 15.165 26.878 hybrid contribution 1.083 2.489 -1.085 2.923 sum 8.272 -18.505 14.079 24.680 Atomic orbital electron populations 1.70050 1.07475 1.27819 1.51259 1.25844 0.95699 1.02891 0.94768 0.85624 0.78401 0.78739 0.79036 1.19758 1.20901 1.19080 1.21562 0.93291 0.92361 1.50939 0.92729 1.18942 0.93933 0.91899 0.95698 1.22129 0.98795 0.93605 1.01352 1.21437 0.94826 0.91616 0.95618 0.87587 1.58768 1.18422 1.55651 1.03378 1.20734 0.80865 0.84183 0.82759 1.90602 1.61782 1.54844 1.38077 1.48071 1.45131 1.33594 1.06865 1.22138 1.01550 0.94251 0.84445 1.22056 0.97942 0.96220 0.99308 1.19446 0.94873 0.93814 0.92649 1.21861 0.91464 0.92817 0.99635 1.58624 1.18229 1.28451 1.32449 1.19512 0.97006 0.93698 0.93993 1.21254 1.00515 0.93486 0.99841 1.21334 0.99683 1.00124 0.93587 1.21338 1.01133 0.96315 0.96989 1.21336 0.99551 0.93885 0.99845 1.21044 0.99797 1.00034 0.92827 1.21986 1.02111 0.97704 0.93455 1.21713 0.91836 0.87533 1.00124 0.92731 0.97839 0.98129 0.93912 0.91470 0.83270 0.84369 0.89538 0.89531 0.91877 0.88785 0.94598 0.90495 0.84529 0.83870 0.85813 0.85253 0.85058 0.85080 0.85809 0.92090 0.88754 0.90670 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.29 21.45 0.28 -53.49 16 2 C 0.01 0.36 5.46 84.66 0.46 0.83 16 3 Si 0.96 42.79 29.54 68.60 2.03 44.81 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.57 4.74 29.85 0.14 1.71 16 10 C -0.12 -4.60 4.54 30.59 0.14 -4.46 16 11 C 0.08 2.73 2.35 44.17 0.10 2.83 16 12 H 0.11 3.42 6.55 -2.39 -0.02 3.40 16 13 N -0.83 -29.32 8.94 -171.80 -1.54 -30.85 16 14 C 0.53 17.46 6.95 87.66 0.61 18.07 16 15 O -0.57 -22.63 15.66 -3.04 -0.05 -22.68 16 16 N -0.60 -15.24 2.97 -817.97 -2.43 -17.66 16 17 C 0.10 2.07 5.14 86.51 0.44 2.52 16 18 C -0.12 -2.06 4.79 30.82 0.15 -1.91 16 19 C -0.01 -0.11 0.43 -52.90 -0.02 -0.13 16 20 C 0.07 1.00 4.63 86.30 0.40 1.39 16 21 N -0.85 -10.28 8.94 -186.72 -1.67 -11.95 16 22 C -0.04 -0.72 4.22 -19.86 -0.08 -0.81 16 23 C -0.13 -2.35 8.98 22.27 0.20 -2.15 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 25 C -0.14 -2.23 10.05 22.27 0.22 -2.00 16 26 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 27 C -0.12 -2.01 8.76 22.27 0.19 -1.81 16 28 C -0.11 -1.92 3.30 30.68 0.10 -1.82 16 29 C 0.11 2.29 5.97 86.38 0.52 2.81 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.00 0.02 6.87 -2.39 -0.02 0.01 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.43 7.18 -2.39 -0.02 2.41 16 35 H 0.35 12.51 7.55 -89.70 -0.68 11.83 16 36 H 0.34 12.36 8.58 -89.70 -0.77 11.59 16 37 H 0.09 1.62 6.80 -2.39 -0.02 1.60 16 38 H 0.09 2.06 5.17 -2.39 -0.01 2.04 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.41 7.61 -2.39 -0.02 1.40 16 41 H 0.04 0.52 4.98 -2.39 -0.01 0.50 16 42 H 0.08 1.03 7.34 -2.38 -0.02 1.01 16 43 H 0.34 3.74 7.66 -89.69 -0.69 3.05 16 44 H 0.35 3.39 9.08 -89.69 -0.81 2.57 16 45 H 0.12 2.01 5.91 -2.91 -0.02 1.99 16 46 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 47 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.12 1.81 7.16 -2.91 -0.02 1.78 16 50 H 0.06 1.20 7.39 -2.39 -0.02 1.18 16 51 H 0.09 1.31 6.48 -2.38 -0.02 1.30 16 52 H 0.07 1.88 7.01 -2.38 -0.02 1.86 16 53 H 0.08 1.39 6.58 -2.38 -0.02 1.38 16 Total: -1.00 -66.73 400.70 -1.09 -67.82 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -1.98 Total: 41.85 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.26 Total: -17.85 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -5.35 Total: -113.95 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -66.73 -1.09 -67.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355330606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.470 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds