Wall clock time and date at job start Wed Apr 1 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46898 * 2 1 4 4 C 1.37491 * 127.17822 * 84.24404 * 3 2 1 5 5 C 1.47955 * 126.47675 * 359.97438 * 4 3 2 6 6 C 1.36700 * 126.93645 * 179.97438 * 5 4 3 7 7 N 1.35204 * 106.01670 * 179.97438 * 6 5 4 8 8 C 1.46502 * 125.72960 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47084 * 125.00109 * 8 7 6 10 10 C 1.50703 * 109.46882 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00089 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99905 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99952 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00273 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47186 * 89.99613 * 14 12 10 16 16 H 1.48491 * 109.47420 * 209.99928 * 14 12 10 17 17 H 1.48507 * 109.46925 * 330.00156 * 14 12 10 18 18 N 1.28634 * 108.54214 * 359.97438 * 7 6 5 19 19 N 1.28612 * 110.54173 * 359.72179 * 18 7 6 20 20 N 1.31223 * 107.05465 * 180.02562 * 4 3 2 21 21 N 1.28506 * 109.95787 * 359.97438 * 20 4 3 22 22 C 1.31253 * 110.09536 * 0.02562 * 21 20 4 23 23 N 1.38538 * 126.37800 * 180.02562 * 22 21 20 24 24 C 1.46897 * 111.00020 * 256.12980 * 23 22 21 25 25 C 1.46899 * 111.00236 * 20.07961 * 23 22 21 26 26 C 1.53783 * 113.61792 * 270.74267 * 25 23 22 27 27 C 1.53781 * 87.08216 * 220.01904 * 26 25 23 28 28 C 1.53779 * 113.61718 * 173.24064 * 25 23 22 29 29 H 1.09001 * 109.47280 * 54.07101 * 1 2 3 30 30 H 1.09006 * 109.46793 * 174.06563 * 1 2 3 31 31 H 1.08996 * 109.47547 * 294.07044 * 1 2 3 32 32 H 1.08999 * 109.47317 * 239.99844 * 2 1 3 33 33 H 1.09003 * 109.46672 * 119.99130 * 2 1 3 34 34 H 1.07998 * 126.99340 * 0.02562 * 6 5 4 35 35 H 1.09002 * 109.47320 * 244.99653 * 8 7 6 36 36 H 1.08996 * 109.47343 * 4.99609 * 8 7 6 37 37 H 1.08998 * 109.47069 * 299.99673 * 9 8 7 38 38 H 1.08998 * 109.47305 * 60.00323 * 9 8 7 39 39 H 0.96998 * 120.00053 * 180.02562 * 13 12 10 40 40 H 1.08999 * 109.47104 * 53.23278 * 24 23 22 41 41 H 1.09002 * 109.47464 * 173.23920 * 24 23 22 42 42 H 1.09007 * 109.46754 * 293.23863 * 24 23 22 43 43 H 1.09002 * 112.84694 * 42.04799 * 25 23 22 44 44 H 1.09003 * 113.60845 * 334.56202 * 26 25 23 45 45 H 1.08991 * 113.61552 * 105.46817 * 26 25 23 46 46 H 1.09004 * 113.61098 * 270.88481 * 27 26 25 47 47 H 1.08995 * 113.61694 * 139.98110 * 27 26 25 48 48 H 1.09004 * 113.61761 * 254.53285 * 28 25 23 49 49 H 1.09002 * 113.61372 * 25.34914 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1916 2.2012 1.0899 5 6 1.9181 1.8563 2.5025 6 6 2.0874 2.6633 3.5928 7 7 1.7115 1.9279 4.6632 8 6 1.7222 2.3786 6.0572 9 6 0.3304 2.1915 6.6644 10 6 0.3417 2.6545 8.0985 11 1 1.2507 3.0429 8.5334 12 6 -0.8086 2.5822 8.8553 13 7 -1.9157 2.1097 8.3255 14 14 -0.7946 3.1554 10.6331 15 1 -1.1437 4.5975 10.6910 16 1 -1.7876 2.3740 11.4131 17 1 0.5590 2.9504 11.2086 18 7 1.3428 0.7661 4.2522 19 7 1.4454 0.6865 2.9727 20 7 2.6445 3.3480 0.6407 21 7 2.7649 3.3015 -0.6379 22 6 2.3961 2.1231 -1.0830 23 7 2.3917 1.7086 -2.4049 24 6 1.0272 1.6986 -2.9489 25 6 3.2781 2.5473 -3.2226 26 6 2.5807 3.7806 -3.8205 27 6 3.3822 3.5133 -5.1055 28 6 3.4473 2.0413 -4.6649 29 1 -0.3634 0.6030 -0.8321 30 1 -0.3633 -1.0222 -0.1063 31 1 -0.3634 0.4191 0.9382 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.4473 3.6816 3.5980 35 1 2.4470 1.7930 6.6228 36 1 1.9970 3.4326 6.0962 37 1 -0.3944 2.7770 6.0989 38 1 0.0557 1.1374 6.6255 39 1 -2.7250 2.0591 8.8578 40 1 0.5644 2.6721 -2.7872 41 1 1.0635 1.4864 -4.0175 42 1 0.4410 0.9296 -2.4455 43 1 4.2215 2.7753 -2.7264 44 1 1.5047 3.6569 -3.9435 45 1 2.8467 4.7150 -3.3265 46 1 4.3540 4.0067 -5.1245 47 1 2.8085 3.6708 -6.0187 48 1 4.4130 1.5717 -4.8525 49 1 2.6090 1.4410 -5.0182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356585350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:57 Heat of formation + Delta-G solvation = 208.633390 kcal Electronic energy + Delta-G solvation = -29991.593105 eV Core-core repulsion = 25993.690329 eV Total energy + Delta-G solvation = -3997.902777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.16291 -42.73692 -40.00388 -36.01117 -35.46765 -34.91804 -32.97422 -31.84889 -30.65961 -30.09776 -29.07787 -27.07122 -25.96402 -25.67174 -24.80355 -24.20024 -23.35173 -22.57796 -21.16035 -20.91158 -19.97170 -19.28516 -17.85022 -17.19160 -16.64300 -16.59645 -16.25416 -15.90397 -15.58058 -15.37056 -15.03645 -14.58945 -14.50695 -14.20692 -14.05995 -13.52001 -13.25153 -13.15006 -13.01117 -12.62611 -12.50539 -12.23342 -12.07029 -11.86414 -11.67305 -11.59579 -11.39861 -11.34203 -11.20118 -11.06355 -10.95284 -10.89885 -10.66879 -10.54862 -10.47747 -10.26040 -10.14403 -10.00927 -9.49934 -9.45546 -9.14832 -8.56967 -8.18786 -6.21049 -4.27963 1.25358 1.98781 2.05583 2.42396 2.75833 3.21264 3.24018 3.28544 3.30596 3.40772 3.92786 4.22398 4.26993 4.29713 4.45687 4.53058 4.57043 4.64505 4.71577 4.86285 4.99606 5.06103 5.12489 5.15299 5.16425 5.20015 5.25227 5.28242 5.38241 5.43237 5.46262 5.53803 5.56695 5.62678 5.66680 5.76991 5.77862 5.92977 5.95767 6.03115 6.07502 6.11655 6.24256 6.34277 6.50202 6.81141 7.05051 7.33637 7.42631 7.73046 8.04640 8.63928 8.72206 8.77098 9.38000 10.89903 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.001948 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.530582 B =14368.566535 C =14765.237642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.458 5.458 4 C 0.280 3.720 5 C 0.022 3.978 6 C 0.004 3.996 7 N -0.265 5.265 8 C 0.109 3.891 9 C 0.015 3.985 10 C -0.533 4.533 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 N -0.058 5.058 19 N -0.270 5.270 20 N -0.272 5.272 21 N -0.309 5.309 22 C 0.350 3.650 23 N -0.449 5.449 24 C 0.018 3.982 25 C 0.081 3.919 26 C -0.168 4.168 27 C -0.139 4.139 28 C -0.132 4.132 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.198 0.802 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.025 0.975 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -1.476 -25.494 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 N -0.151 5.151 4 C 0.013 3.987 5 C -0.117 4.117 6 C -0.152 4.152 7 N -0.057 5.057 8 C -0.009 4.009 9 C -0.023 4.023 10 C -0.572 4.572 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 N -0.039 5.039 19 N -0.138 5.138 20 N -0.114 5.114 21 N -0.155 5.155 22 C -0.007 4.007 23 N -0.172 5.172 24 C -0.129 4.129 25 C -0.026 4.026 26 C -0.207 4.207 27 C -0.177 4.177 28 C -0.170 4.170 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.215 0.785 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.512 -2.035 -25.018 26.505 hybrid contribution -0.500 0.752 0.838 1.232 sum 8.012 -1.284 -24.180 25.505 Atomic orbital electron populations 1.22163 0.93742 1.03282 1.03266 1.21986 0.95987 0.78091 1.05408 1.46276 1.49463 1.13938 1.05389 1.20959 1.03331 0.88176 0.86225 1.18366 1.10659 0.93738 0.88942 1.23517 1.05387 1.00759 0.85502 1.47920 1.38259 1.08906 1.10601 1.22903 1.05073 1.00546 0.72372 1.19426 0.87525 0.99540 0.95838 1.20921 0.96801 1.43932 0.95503 0.91999 1.24999 0.95355 0.94816 0.98865 1.69968 1.00746 1.44634 1.36992 0.86465 0.78068 0.78724 0.84013 1.20470 1.21026 1.19659 1.78259 1.17067 1.03468 1.05073 1.75265 1.16721 1.19946 1.01871 1.74313 1.17224 1.17022 1.02848 1.74591 1.22917 1.14517 1.03479 1.22336 1.02420 0.87949 0.87948 1.58642 1.11085 1.51387 0.96052 1.22720 0.86914 1.01857 1.01392 1.23265 0.96309 0.91266 0.91795 1.23587 1.00255 0.99833 0.97037 1.22708 1.00904 0.96401 0.97727 1.23150 1.02771 0.96881 0.94161 0.92572 0.90147 0.90916 0.88536 0.87348 0.78467 0.88718 0.88213 0.95685 0.94342 0.92551 0.93551 0.89419 0.90550 0.86954 0.89567 0.90380 0.89880 0.91100 0.90807 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.09 37.16 0.37 -1.31 16 2 C 0.11 1.17 6.20 -4.04 -0.03 1.14 16 3 N -0.46 -6.18 2.83 -114.62 -0.32 -6.51 16 4 C 0.28 4.45 7.94 -153.83 -1.22 3.23 16 5 C 0.02 0.37 7.07 -83.21 -0.59 -0.21 16 6 C 0.00 0.06 11.54 -16.62 -0.19 -0.13 16 7 N -0.27 -4.73 3.43 -60.93 -0.21 -4.94 16 8 C 0.11 1.97 6.39 -4.04 -0.03 1.94 16 9 C 0.01 0.35 5.10 -27.88 -0.14 0.20 16 10 C -0.53 -13.75 9.11 -34.44 -0.31 -14.06 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 14 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 N -0.06 -1.14 12.87 60.35 0.78 -0.36 16 19 N -0.27 -4.80 10.87 33.01 0.36 -4.44 16 20 N -0.27 -4.53 12.21 32.60 0.40 -4.13 16 21 N -0.31 -4.77 11.38 30.34 0.35 -4.42 16 22 C 0.35 4.58 6.85 -318.69 -2.18 2.40 16 23 N -0.45 -4.42 4.85 -173.78 -0.84 -5.27 16 24 C 0.02 0.14 8.20 60.06 0.49 0.63 16 25 C 0.08 0.71 3.34 -66.90 -0.22 0.49 16 26 C -0.17 -1.33 7.29 -25.92 -0.19 -1.52 16 27 C -0.14 -0.83 8.08 -25.92 -0.21 -1.04 16 28 C -0.13 -0.81 7.56 -25.92 -0.20 -1.01 16 29 H 0.06 0.52 6.11 -51.93 -0.32 0.21 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.11 1.30 7.04 -51.93 -0.37 0.93 16 34 H 0.20 2.53 8.06 -52.49 -0.42 2.10 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.10 1.54 8.06 -51.93 -0.42 1.12 16 37 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 0.40 6.74 -51.93 -0.35 0.05 16 41 H 0.09 0.48 6.12 -51.93 -0.32 0.16 16 42 H 0.08 0.56 5.68 -51.92 -0.29 0.27 16 43 H 0.11 1.14 7.95 -51.93 -0.41 0.73 16 44 H 0.09 0.65 5.67 -51.93 -0.29 0.36 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 0.47 6.43 -51.93 -0.33 0.13 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -31.28 398.01 -9.82 -41.10 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.29 Total: -0.06 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -4.74 Total: -7.65 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 1.24 Total: -54.80 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.28 -9.82 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356585350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.731 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds