Wall clock time and date at job start Wed Apr 1 2020 03:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46898 * 2 1 4 4 C 1.37491 * 127.17822 * 84.24404 * 3 2 1 5 5 C 1.47955 * 126.47675 * 359.97438 * 4 3 2 6 6 C 1.36700 * 126.93645 * 179.97438 * 5 4 3 7 7 N 1.35204 * 106.01670 * 179.97438 * 6 5 4 8 8 C 1.46502 * 125.72960 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47084 * 125.00109 * 8 7 6 10 10 C 1.50703 * 109.46882 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00089 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99905 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99952 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00273 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47186 * 89.99613 * 14 12 10 16 16 H 1.48491 * 109.47420 * 209.99928 * 14 12 10 17 17 H 1.48507 * 109.46925 * 330.00156 * 14 12 10 18 18 N 1.28634 * 108.54214 * 359.97438 * 7 6 5 19 19 N 1.28612 * 110.54173 * 359.72179 * 18 7 6 20 20 N 1.31223 * 107.05465 * 180.02562 * 4 3 2 21 21 N 1.28506 * 109.95787 * 359.97438 * 20 4 3 22 22 C 1.31253 * 110.09536 * 0.02562 * 21 20 4 23 23 N 1.38538 * 126.37800 * 180.02562 * 22 21 20 24 24 C 1.46897 * 111.00020 * 256.12980 * 23 22 21 25 25 C 1.46899 * 111.00236 * 20.07961 * 23 22 21 26 26 C 1.53783 * 113.61792 * 270.74267 * 25 23 22 27 27 C 1.53781 * 87.08216 * 220.01904 * 26 25 23 28 28 C 1.53779 * 113.61718 * 173.24064 * 25 23 22 29 29 H 1.09001 * 109.47280 * 54.07101 * 1 2 3 30 30 H 1.09006 * 109.46793 * 174.06563 * 1 2 3 31 31 H 1.08996 * 109.47547 * 294.07044 * 1 2 3 32 32 H 1.08999 * 109.47317 * 239.99844 * 2 1 3 33 33 H 1.09003 * 109.46672 * 119.99130 * 2 1 3 34 34 H 1.07998 * 126.99340 * 0.02562 * 6 5 4 35 35 H 1.09002 * 109.47320 * 244.99653 * 8 7 6 36 36 H 1.08996 * 109.47343 * 4.99609 * 8 7 6 37 37 H 1.08998 * 109.47069 * 299.99673 * 9 8 7 38 38 H 1.08998 * 109.47305 * 60.00323 * 9 8 7 39 39 H 0.96998 * 120.00053 * 180.02562 * 13 12 10 40 40 H 1.08999 * 109.47104 * 53.23278 * 24 23 22 41 41 H 1.09002 * 109.47464 * 173.23920 * 24 23 22 42 42 H 1.09007 * 109.46754 * 293.23863 * 24 23 22 43 43 H 1.09002 * 112.84694 * 42.04799 * 25 23 22 44 44 H 1.09003 * 113.60845 * 334.56202 * 26 25 23 45 45 H 1.08991 * 113.61552 * 105.46817 * 26 25 23 46 46 H 1.09004 * 113.61098 * 270.88481 * 27 26 25 47 47 H 1.08995 * 113.61694 * 139.98110 * 27 26 25 48 48 H 1.09004 * 113.61761 * 254.53285 * 28 25 23 49 49 H 1.09002 * 113.61372 * 25.34914 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1916 2.2012 1.0899 5 6 1.9181 1.8563 2.5025 6 6 2.0874 2.6633 3.5928 7 7 1.7115 1.9279 4.6632 8 6 1.7222 2.3786 6.0572 9 6 0.3304 2.1915 6.6644 10 6 0.3417 2.6545 8.0985 11 1 1.2507 3.0429 8.5334 12 6 -0.8086 2.5822 8.8553 13 7 -1.9157 2.1097 8.3255 14 14 -0.7946 3.1554 10.6331 15 1 -1.1437 4.5975 10.6910 16 1 -1.7876 2.3740 11.4131 17 1 0.5590 2.9504 11.2086 18 7 1.3428 0.7661 4.2522 19 7 1.4454 0.6865 2.9727 20 7 2.6445 3.3480 0.6407 21 7 2.7649 3.3015 -0.6379 22 6 2.3961 2.1231 -1.0830 23 7 2.3917 1.7086 -2.4049 24 6 1.0272 1.6986 -2.9489 25 6 3.2781 2.5473 -3.2226 26 6 2.5807 3.7806 -3.8205 27 6 3.3822 3.5133 -5.1055 28 6 3.4473 2.0413 -4.6649 29 1 -0.3634 0.6030 -0.8321 30 1 -0.3633 -1.0222 -0.1063 31 1 -0.3634 0.4191 0.9382 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.4473 3.6816 3.5980 35 1 2.4470 1.7930 6.6228 36 1 1.9970 3.4326 6.0962 37 1 -0.3944 2.7770 6.0989 38 1 0.0557 1.1374 6.6255 39 1 -2.7250 2.0591 8.8578 40 1 0.5644 2.6721 -2.7872 41 1 1.0635 1.4864 -4.0175 42 1 0.4410 0.9296 -2.4455 43 1 4.2215 2.7753 -2.7264 44 1 1.5047 3.6569 -3.9435 45 1 2.8467 4.7150 -3.3265 46 1 4.3540 4.0067 -5.1245 47 1 2.8085 3.6708 -6.0187 48 1 4.4130 1.5717 -4.8525 49 1 2.6090 1.4410 -5.0182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356585350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:56 Heat of formation + Delta-G solvation = 192.007394 kcal Electronic energy + Delta-G solvation = -29992.314063 eV Core-core repulsion = 25993.690329 eV Total energy + Delta-G solvation = -3998.623734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.43485 -43.92912 -40.67751 -37.05084 -36.78459 -35.92517 -34.81144 -33.10072 -31.84309 -31.60202 -30.21186 -27.80631 -27.44339 -26.53867 -25.65418 -25.15386 -24.48408 -24.25276 -22.49882 -21.94947 -21.22586 -19.91150 -19.06435 -18.61971 -17.80423 -17.69146 -17.45827 -17.27277 -16.70359 -16.47463 -16.06444 -16.01406 -15.48692 -15.33620 -15.12819 -14.88197 -14.34256 -14.13796 -13.75304 -13.71056 -13.63974 -13.43414 -13.08020 -12.88099 -12.86546 -12.73946 -12.72084 -12.53381 -12.40529 -12.37243 -12.19303 -12.03938 -11.88853 -11.72327 -11.50138 -11.41555 -11.35062 -11.23309 -11.19273 -10.94461 -10.62076 -10.15074 -9.28371 -8.25835 -6.39314 0.08122 0.65902 1.00001 1.25491 1.39629 1.44235 1.46832 1.55711 1.99904 2.39755 2.51003 2.74266 3.10138 3.44591 3.58367 3.64132 3.73131 3.75601 3.85478 3.94688 3.97274 4.00305 4.03676 4.19013 4.25430 4.30614 4.38947 4.43568 4.49475 4.56265 4.60275 4.66146 4.71455 4.78541 4.82995 4.86038 4.91658 5.03215 5.09362 5.13080 5.14793 5.19572 5.28065 5.35383 5.44247 5.48614 5.54767 5.69114 5.74513 6.04539 6.09966 6.76982 7.30086 7.32098 7.53144 8.86524 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.001948 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.530582 B =14368.566535 C =14765.237642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 N -0.457 5.457 4 C 0.263 3.737 5 C 0.018 3.982 6 C 0.014 3.986 7 N -0.271 5.271 8 C 0.123 3.877 9 C 0.022 3.978 10 C -0.541 4.541 11 H 0.082 0.918 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.256 1.256 18 N -0.098 5.098 19 N -0.269 5.269 20 N -0.289 5.289 21 N -0.335 5.335 22 C 0.363 3.637 23 N -0.444 5.444 24 C 0.016 3.984 25 C 0.068 3.932 26 C -0.170 4.170 27 C -0.130 4.130 28 C -0.117 4.117 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.230 0.770 35 H 0.110 0.890 36 H 0.133 0.867 37 H -0.007 1.007 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.036 0.964 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.714 -1.272 -27.035 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.015 4.015 3 N -0.150 5.150 4 C -0.005 4.005 5 C -0.122 4.122 6 C -0.141 4.141 7 N -0.062 5.062 8 C 0.004 3.996 9 C -0.016 4.016 10 C -0.580 4.580 11 H 0.100 0.900 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.180 1.180 18 N -0.078 5.078 19 N -0.137 5.137 20 N -0.132 5.132 21 N -0.181 5.181 22 C 0.007 3.993 23 N -0.168 5.168 24 C -0.130 4.130 25 C -0.039 4.039 26 C -0.209 4.209 27 C -0.168 4.168 28 C -0.155 4.155 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.246 0.754 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.011 0.989 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.099 0.901 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.662 -1.843 -26.573 28.335 hybrid contribution -0.837 0.673 1.147 1.571 sum 8.825 -1.170 -25.426 26.940 Atomic orbital electron populations 1.22114 0.93113 1.04691 1.01781 1.22163 0.96417 0.76878 1.06030 1.46442 1.49173 1.14558 1.04856 1.20861 1.04481 0.88765 0.86405 1.18586 1.10388 0.93518 0.89734 1.24025 1.04004 1.01557 0.84521 1.47824 1.38718 1.08850 1.10839 1.22689 1.01528 1.02863 0.72503 1.19171 0.90371 0.96507 0.95549 1.21450 0.97339 1.42820 0.96361 0.90025 1.26007 0.95076 0.95033 1.03614 1.70125 1.01583 1.46606 1.38846 0.85343 0.78543 0.78157 0.78380 1.19795 1.21438 1.17991 1.78249 1.18972 1.04737 1.05830 1.75221 1.16441 1.20612 1.01401 1.74225 1.17634 1.17647 1.03661 1.74541 1.24541 1.15981 1.03045 1.22744 1.00226 0.87180 0.89163 1.58883 1.12409 1.50973 0.94517 1.22848 0.85450 1.01539 1.03137 1.23407 0.95441 0.92240 0.92814 1.23592 1.00795 0.98412 0.98072 1.22682 1.00777 0.96099 0.97210 1.23121 1.03774 0.97176 0.91455 0.91613 0.87762 0.94243 0.85893 0.88641 0.75401 0.87219 0.84891 0.98851 0.97948 0.92702 0.94559 0.86485 0.89992 0.88956 0.89012 0.92519 0.89757 0.89515 0.90124 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.09 71.98 0.73 -2.37 16 2 C 0.11 2.21 6.20 86.38 0.54 2.75 16 3 N -0.46 -12.19 2.83 -516.56 -1.46 -13.65 16 4 C 0.26 8.40 7.94 136.28 1.08 9.48 16 5 C 0.02 0.60 7.07 40.93 0.29 0.88 16 6 C 0.01 0.45 11.54 83.81 0.97 1.42 16 7 N -0.27 -9.68 3.43 -346.69 -1.19 -10.87 16 8 C 0.12 4.32 6.39 86.38 0.55 4.87 16 9 C 0.02 1.07 5.10 29.85 0.15 1.23 16 10 C -0.54 -27.86 9.11 25.60 0.23 -27.63 16 11 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 14 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 18 N -0.10 -3.93 12.87 37.02 0.48 -3.45 16 19 N -0.27 -9.81 10.87 -49.48 -0.54 -10.34 16 20 N -0.29 -9.71 12.21 -50.78 -0.62 -10.33 16 21 N -0.34 -10.39 11.38 -57.92 -0.66 -11.05 16 22 C 0.36 9.31 6.85 260.05 1.78 11.09 16 23 N -0.44 -8.03 4.85 -703.73 -3.42 -11.44 16 24 C 0.02 0.21 8.20 127.69 1.05 1.26 16 25 C 0.07 1.10 3.34 45.44 0.15 1.26 16 26 C -0.17 -2.49 7.29 31.12 0.23 -2.27 16 27 C -0.13 -1.24 8.08 31.12 0.25 -0.99 16 28 C -0.12 -1.12 7.56 31.12 0.24 -0.88 16 29 H 0.07 1.14 6.11 -2.39 -0.01 1.12 16 30 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.04 1.04 8.08 -2.39 -0.02 1.02 16 32 H 0.12 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.10 2.28 7.04 -2.39 -0.02 2.26 16 34 H 0.23 5.46 8.06 -2.91 -0.02 5.43 16 35 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.13 3.80 8.06 -2.39 -0.02 3.78 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.00 0.12 8.11 -2.39 -0.02 0.10 16 39 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.04 0.57 6.74 -2.39 -0.02 0.55 16 41 H 0.12 0.85 6.12 -2.39 -0.01 0.83 16 42 H 0.08 0.99 5.68 -2.38 -0.01 0.98 16 43 H 0.09 1.87 7.95 -2.39 -0.02 1.85 16 44 H 0.09 1.24 5.67 -2.39 -0.01 1.22 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.10 0.69 6.43 -2.39 -0.02 0.67 16 Total: -1.00 -70.93 398.01 4.56 -66.37 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.97 Total: 15.21 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 8.69 Total: 0.65 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -7.12 Total: -126.02 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -70.93 4.56 -66.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356585350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.377 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds