Wall clock time and date at job start Wed Apr 1 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47311 * 2 1 4 4 C 1.50703 * 109.47394 * 119.99273 * 2 1 3 5 5 H 1.08003 * 119.99572 * 120.00111 * 4 2 1 6 6 C 1.37871 * 120.00399 * 300.00534 * 4 2 1 7 7 N 1.31522 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00352 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46652 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47161 * 119.99575 * 8 6 4 11 11 H 1.48499 * 109.47066 * 240.00386 * 8 6 4 12 12 N 1.46900 * 109.47414 * 239.99904 * 2 1 3 13 13 C 1.46903 * 111.00246 * 183.95184 * 12 2 1 14 14 C 1.38583 * 110.99931 * 59.99583 * 12 2 1 15 15 N 1.31217 * 126.47289 * 21.64647 * 14 12 2 16 16 N 1.28520 * 109.85964 * 180.25799 * 15 14 12 17 17 C 1.30294 * 110.05369 * 359.73687 * 16 15 14 18 18 C 1.50704 * 126.34693 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47544 * 270.04641 * 18 17 16 20 20 C 1.52995 * 117.49721 * 243.74931 * 19 18 17 21 21 C 1.52993 * 117.49580 * 175.08724 * 19 18 17 22 22 N 1.36452 * 126.47251 * 201.47056 * 14 12 2 23 23 C 1.46500 * 127.13551 * 0.02562 * 22 14 12 24 24 C 1.50699 * 109.46921 * 84.05167 * 23 22 14 25 25 N 1.33234 * 125.52838 * 273.58100 * 24 23 22 26 26 C 1.30832 * 109.83311 * 180.26489 * 25 24 23 27 27 N 1.34432 * 108.07414 * 359.97438 * 26 25 24 28 28 C 1.46499 * 126.82083 * 180.02562 * 27 26 25 29 29 N 1.30712 * 125.52633 * 93.88188 * 24 23 22 30 30 H 1.09008 * 109.47526 * 300.00130 * 1 2 3 31 31 H 1.08998 * 109.47224 * 60.00358 * 1 2 3 32 32 H 1.08999 * 109.47149 * 180.02562 * 1 2 3 33 33 H 0.96995 * 119.99939 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46921 * 301.70188 * 13 12 2 35 35 H 1.08998 * 109.46817 * 61.69651 * 13 12 2 36 36 H 1.08995 * 109.47113 * 181.70006 * 13 12 2 37 37 H 1.08998 * 109.47150 * 30.05010 * 18 17 16 38 38 H 1.09001 * 109.46792 * 150.04424 * 18 17 16 39 39 H 1.08998 * 115.54278 * 29.41797 * 19 18 17 40 40 H 1.08998 * 117.50492 * 359.97438 * 20 19 18 41 41 H 1.09004 * 117.49772 * 145.02148 * 20 19 18 42 42 H 1.09006 * 117.49778 * 214.97875 * 21 19 18 43 43 H 1.08998 * 117.50292 * 359.97438 * 21 19 18 44 44 H 1.08995 * 109.47480 * 324.05133 * 23 22 14 45 45 H 1.08994 * 109.47015 * 204.05149 * 23 22 14 46 46 H 1.08004 * 125.96235 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47484 * 269.98961 * 28 27 26 48 48 H 1.09004 * 109.46852 * 29.99101 * 28 27 26 49 49 H 1.09004 * 109.47105 * 149.98663 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3215 -1.1200 4.0081 9 1 3.1456 -2.2874 3.6039 10 1 3.1467 -0.1870 4.8165 11 1 1.1662 -1.5865 4.8162 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5753 -0.0642 -2.3519 15 7 1.1720 1.1801 -2.4559 16 7 0.8253 1.4268 -3.6686 17 6 0.9907 0.3650 -4.4054 18 6 0.6988 0.2460 -5.8791 19 6 -0.7476 -0.2117 -6.0773 20 6 -0.9736 -1.5708 -6.7423 21 6 -1.2759 -0.2823 -7.5114 22 7 1.4776 -0.6216 -3.5935 23 6 1.8177 -1.9943 -3.9759 24 6 0.6511 -2.9016 -3.6810 25 7 0.4074 -3.4946 -2.5131 26 6 -0.6806 -4.2160 -2.6000 27 7 -1.1626 -4.0949 -3.8491 28 6 -2.3663 -4.7301 -4.3911 29 7 -0.2827 -3.2388 -4.5312 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.7094 1.1620 3.4843 34 1 3.9183 0.2041 -1.1286 35 1 3.8013 -1.3788 -0.3229 36 1 3.8229 -1.2843 -2.1002 37 1 0.8421 1.2150 -6.3572 38 1 1.3750 -0.4830 -6.3257 39 1 -1.4470 0.0896 -5.2974 40 1 -0.0920 -2.1389 -7.0391 41 1 -1.8221 -2.1636 -6.4004 42 1 -2.3232 -0.0279 -7.6750 43 1 -0.5933 -0.0023 -8.3136 44 1 2.6875 -2.3248 -3.4082 45 1 2.0447 -2.0290 -5.0414 46 1 -1.1156 -4.8058 -1.8067 47 1 -2.1049 -5.6974 -4.8202 48 1 -3.0936 -4.8718 -3.5917 49 1 -2.7960 -4.0936 -5.1647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001390901773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:25 Heat of formation + Delta-G solvation = 225.478310 kcal Electronic energy + Delta-G solvation = -32056.939824 eV Core-core repulsion = 28059.767498 eV Total energy + Delta-G solvation = -3997.172326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51022 -41.95667 -37.62769 -36.84959 -35.39460 -33.69388 -32.79838 -31.35889 -30.97982 -29.15678 -28.62235 -27.37483 -26.23739 -25.17472 -24.18634 -22.51094 -22.10451 -21.75123 -21.43374 -20.90882 -19.77504 -19.27558 -17.24153 -16.86239 -16.22867 -15.99381 -15.79861 -15.53822 -15.17469 -15.02885 -14.57898 -14.34785 -14.04265 -13.73675 -13.41872 -13.35514 -13.18643 -13.14577 -12.85990 -12.50018 -12.21488 -11.87789 -11.74573 -11.55143 -11.53912 -11.05178 -10.97364 -10.83266 -10.61671 -10.41743 -10.19010 -10.12112 -9.98446 -9.98336 -9.94630 -9.85147 -9.76103 -9.67838 -9.55972 -9.07931 -8.49597 -8.35730 -7.28647 -5.95384 -4.01281 1.48284 2.10457 2.34348 2.56255 3.22692 3.33103 3.40626 3.44534 3.48270 3.79327 4.04716 4.25201 4.41266 4.53884 4.63769 4.72283 4.73529 4.76354 4.82029 4.87623 5.06273 5.07620 5.12841 5.27214 5.35415 5.37710 5.55607 5.61204 5.67917 5.77441 5.91633 6.03768 6.09451 6.13861 6.21875 6.25444 6.30435 6.36573 6.47605 6.62642 6.72785 7.00380 7.07489 7.24833 7.31800 7.57301 7.80703 7.86100 8.09654 8.11714 8.34198 8.59237 9.01484 9.43806 9.62501 11.11297 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.003938 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.218915 B = 7108.090387 C = 8370.089085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.231 3.769 3 H 0.022 0.978 4 C -0.507 4.507 5 H 0.066 0.934 6 C 0.062 3.938 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.450 5.450 13 C 0.046 3.954 14 C 0.397 3.603 15 N -0.320 5.320 16 N -0.285 5.285 17 C 0.158 3.842 18 C 0.010 3.990 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.186 4.186 22 N -0.479 5.479 23 C 0.217 3.783 24 C 0.204 3.796 25 N -0.497 5.497 26 C 0.251 3.749 27 N -0.387 5.387 28 C 0.099 3.901 29 N -0.292 5.292 30 H 0.086 0.914 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.218 0.782 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 -12.332 -19.353 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.127 3.873 3 H 0.040 0.960 4 C -0.545 4.545 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.175 5.175 13 C -0.101 4.101 14 C 0.042 3.958 15 N -0.163 5.163 16 N -0.124 5.124 17 C -0.109 4.109 18 C -0.030 4.030 19 C -0.163 4.163 20 C -0.183 4.183 21 C -0.223 4.223 22 N -0.176 5.176 23 C 0.090 3.910 24 C -0.080 4.080 25 N -0.222 5.222 26 C -0.046 4.046 27 N -0.179 5.179 28 C -0.044 4.044 29 N -0.122 5.122 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.136 0.864 45 H 0.126 0.874 46 H 0.234 0.766 47 H 0.096 0.904 48 H 0.110 0.890 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.348 -11.022 -19.221 22.580 hybrid contribution 0.291 -1.440 0.854 1.699 sum -4.057 -12.462 -18.367 22.563 Atomic orbital electron populations 1.21748 0.97263 0.98910 1.00654 1.19302 0.92807 0.92633 0.82522 0.96006 1.21113 1.31564 1.12443 0.89425 0.91597 1.24897 0.95171 0.95044 0.98897 1.69945 1.36496 1.22756 1.23318 0.86446 0.78522 0.79546 0.82889 1.19699 1.21146 1.21131 1.59118 1.10158 1.49348 0.98887 1.22257 0.85428 1.00723 1.01712 1.23099 0.99680 0.87888 0.85166 1.74832 1.20477 1.10576 1.10414 1.73953 1.17948 1.22341 0.98146 1.24377 1.04383 0.86176 0.95988 1.19426 0.94754 1.03028 0.85793 1.22112 0.96564 1.01592 0.96021 1.22834 1.03081 0.89853 1.02580 1.23027 1.01662 1.03127 0.94489 1.46120 1.51711 1.10614 1.09187 1.19656 0.92686 0.76471 1.02163 1.23990 0.96979 0.98780 0.88216 1.70572 1.15949 1.11982 1.23699 1.26157 0.91998 0.98055 0.88358 1.50461 1.21576 1.36043 1.09781 1.21905 0.83416 0.97915 1.01123 1.78009 1.03453 1.10483 1.20206 0.89537 0.96600 0.95551 0.92980 0.95185 0.88809 0.93968 0.88425 0.90528 0.88159 0.88963 0.89530 0.89167 0.88879 0.86382 0.87414 0.76619 0.90357 0.89037 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 8.80 37.15 0.33 -3.15 16 2 C 0.23 6.17 1.73 -68.87 -0.12 6.05 16 3 H 0.02 0.67 7.91 -51.93 -0.41 0.26 16 4 C -0.51 -13.89 7.95 -34.44 -0.27 -14.17 16 5 H 0.07 1.76 6.40 -52.48 -0.34 1.43 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.90 11.32 55.43 0.63 -25.28 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.45 -10.18 4.66 -176.08 -0.82 -11.00 16 13 C 0.05 0.91 9.13 60.07 0.55 1.45 16 14 C 0.40 8.65 6.00 -318.87 -1.91 6.73 16 15 N -0.32 -7.72 10.08 30.31 0.31 -7.41 16 16 N -0.28 -6.13 12.18 32.99 0.40 -5.73 16 17 C 0.16 2.73 7.28 -154.02 -1.12 1.61 16 18 C 0.01 0.12 5.86 -27.88 -0.16 -0.05 16 19 C -0.14 -1.71 5.72 -90.62 -0.52 -2.23 16 20 C -0.15 -1.46 8.23 -26.69 -0.22 -1.68 16 21 C -0.19 -1.71 10.25 -26.70 -0.27 -1.99 16 22 N -0.48 -8.41 2.79 -115.37 -0.32 -8.73 16 23 C 0.22 3.02 6.69 -5.19 -0.03 2.98 16 24 C 0.20 3.04 7.72 -156.86 -1.21 1.83 16 25 N -0.50 -8.07 11.19 -11.98 -0.13 -8.20 16 26 C 0.25 3.06 12.66 -90.65 -1.15 1.91 16 27 N -0.39 -4.16 4.04 -69.44 -0.28 -4.44 16 28 C 0.10 0.56 11.53 59.85 0.69 1.25 16 29 N -0.29 -3.78 10.59 32.42 0.34 -3.44 16 30 H 0.09 2.53 6.07 -51.92 -0.32 2.22 16 31 H 0.02 0.42 6.27 -51.93 -0.33 0.09 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.86 6.30 -51.93 -0.33 1.53 16 36 H 0.04 0.68 6.69 -51.93 -0.35 0.33 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.76 6.91 -51.93 -0.36 0.40 16 39 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 40 H 0.09 0.88 8.03 -51.93 -0.42 0.47 16 41 H 0.09 0.90 8.02 -51.93 -0.42 0.48 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.12 1.59 6.70 -51.93 -0.35 1.24 16 45 H 0.11 1.13 7.10 -51.93 -0.37 0.76 16 46 H 0.22 1.74 8.06 -52.48 -0.42 1.32 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -36.44 398.52 -11.75 -48.19 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.33 Total: 1.55 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -5.53 Total: 2.19 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: 0.12 Total: -74.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.44 -11.75 -48.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390901773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 273.673 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 237.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 225.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds