Wall clock time and date at job start Wed Apr 1 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47311 * 2 1 4 4 C 1.50703 * 109.47394 * 119.99273 * 2 1 3 5 5 H 1.08003 * 119.99572 * 120.00111 * 4 2 1 6 6 C 1.37871 * 120.00399 * 300.00534 * 4 2 1 7 7 N 1.31522 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00352 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46652 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47161 * 119.99575 * 8 6 4 11 11 H 1.48499 * 109.47066 * 240.00386 * 8 6 4 12 12 N 1.46900 * 109.47414 * 239.99904 * 2 1 3 13 13 C 1.46903 * 111.00246 * 183.95184 * 12 2 1 14 14 C 1.38583 * 110.99931 * 59.99583 * 12 2 1 15 15 N 1.31217 * 126.47289 * 21.64647 * 14 12 2 16 16 N 1.28520 * 109.85964 * 180.25799 * 15 14 12 17 17 C 1.30294 * 110.05369 * 359.73687 * 16 15 14 18 18 C 1.50704 * 126.34693 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47544 * 270.04641 * 18 17 16 20 20 C 1.52995 * 117.49721 * 243.74931 * 19 18 17 21 21 C 1.52993 * 117.49580 * 175.08724 * 19 18 17 22 22 N 1.36452 * 126.47251 * 201.47056 * 14 12 2 23 23 C 1.46500 * 127.13551 * 0.02562 * 22 14 12 24 24 C 1.50699 * 109.46921 * 84.05167 * 23 22 14 25 25 N 1.33234 * 125.52838 * 273.58100 * 24 23 22 26 26 C 1.30832 * 109.83311 * 180.26489 * 25 24 23 27 27 N 1.34432 * 108.07414 * 359.97438 * 26 25 24 28 28 C 1.46499 * 126.82083 * 180.02562 * 27 26 25 29 29 N 1.30712 * 125.52633 * 93.88188 * 24 23 22 30 30 H 1.09008 * 109.47526 * 300.00130 * 1 2 3 31 31 H 1.08998 * 109.47224 * 60.00358 * 1 2 3 32 32 H 1.08999 * 109.47149 * 180.02562 * 1 2 3 33 33 H 0.96995 * 119.99939 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46921 * 301.70188 * 13 12 2 35 35 H 1.08998 * 109.46817 * 61.69651 * 13 12 2 36 36 H 1.08995 * 109.47113 * 181.70006 * 13 12 2 37 37 H 1.08998 * 109.47150 * 30.05010 * 18 17 16 38 38 H 1.09001 * 109.46792 * 150.04424 * 18 17 16 39 39 H 1.08998 * 115.54278 * 29.41797 * 19 18 17 40 40 H 1.08998 * 117.50492 * 359.97438 * 20 19 18 41 41 H 1.09004 * 117.49772 * 145.02148 * 20 19 18 42 42 H 1.09006 * 117.49778 * 214.97875 * 21 19 18 43 43 H 1.08998 * 117.50292 * 359.97438 * 21 19 18 44 44 H 1.08995 * 109.47480 * 324.05133 * 23 22 14 45 45 H 1.08994 * 109.47015 * 204.05149 * 23 22 14 46 46 H 1.08004 * 125.96235 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47484 * 269.98961 * 28 27 26 48 48 H 1.09004 * 109.46852 * 29.99101 * 28 27 26 49 49 H 1.09004 * 109.47105 * 149.98663 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3215 -1.1200 4.0081 9 1 3.1456 -2.2874 3.6039 10 1 3.1467 -0.1870 4.8165 11 1 1.1662 -1.5865 4.8162 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5753 -0.0642 -2.3519 15 7 1.1720 1.1801 -2.4559 16 7 0.8253 1.4268 -3.6686 17 6 0.9907 0.3650 -4.4054 18 6 0.6988 0.2460 -5.8791 19 6 -0.7476 -0.2117 -6.0773 20 6 -0.9736 -1.5708 -6.7423 21 6 -1.2759 -0.2823 -7.5114 22 7 1.4776 -0.6216 -3.5935 23 6 1.8177 -1.9943 -3.9759 24 6 0.6511 -2.9016 -3.6810 25 7 0.4074 -3.4946 -2.5131 26 6 -0.6806 -4.2160 -2.6000 27 7 -1.1626 -4.0949 -3.8491 28 6 -2.3663 -4.7301 -4.3911 29 7 -0.2827 -3.2388 -4.5312 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.7094 1.1620 3.4843 34 1 3.9183 0.2041 -1.1286 35 1 3.8013 -1.3788 -0.3229 36 1 3.8229 -1.2843 -2.1002 37 1 0.8421 1.2150 -6.3572 38 1 1.3750 -0.4830 -6.3257 39 1 -1.4470 0.0896 -5.2974 40 1 -0.0920 -2.1389 -7.0391 41 1 -1.8221 -2.1636 -6.4004 42 1 -2.3232 -0.0279 -7.6750 43 1 -0.5933 -0.0023 -8.3136 44 1 2.6875 -2.3248 -3.4082 45 1 2.0447 -2.0290 -5.0414 46 1 -1.1156 -4.8058 -1.8067 47 1 -2.1049 -5.6974 -4.8202 48 1 -3.0936 -4.8718 -3.5917 49 1 -2.7960 -4.0936 -5.1647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390901773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:24 Heat of formation + Delta-G solvation = 204.752770 kcal Electronic energy + Delta-G solvation = -32057.838551 eV Core-core repulsion = 28059.767498 eV Total energy + Delta-G solvation = -3998.071053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.97970 -42.94874 -38.91318 -38.28583 -36.60016 -34.89892 -34.59507 -32.45609 -32.23671 -31.18076 -29.68255 -28.74970 -27.21999 -27.07808 -25.96762 -23.72744 -23.16298 -22.91574 -22.62768 -22.02986 -20.97989 -20.91312 -18.55094 -18.07208 -17.95192 -17.38511 -16.84716 -16.74731 -16.69525 -16.29107 -15.95581 -15.63534 -15.31072 -15.04062 -14.76508 -14.57468 -14.31194 -14.00957 -13.97634 -13.81593 -13.69916 -13.40126 -13.00632 -12.76454 -12.72090 -12.66680 -12.52393 -12.44194 -12.24983 -12.19455 -12.12489 -12.00230 -11.53917 -11.30536 -11.18053 -11.04950 -10.85205 -10.79956 -10.67669 -10.55445 -10.47607 -10.23893 -9.06592 -8.09405 -6.23551 0.48480 0.82664 1.29995 1.46182 1.46639 1.49970 1.59953 1.89848 2.09138 2.45308 2.94026 3.06651 3.11476 3.22026 3.37483 3.44125 3.82751 3.86796 3.97770 4.01663 4.06578 4.14671 4.17335 4.32295 4.45033 4.46442 4.50438 4.57690 4.69181 4.74039 4.78423 4.82074 4.82592 4.90965 4.97296 5.04549 5.07054 5.14165 5.17341 5.25805 5.32253 5.37096 5.38345 5.44769 5.58807 5.69091 5.92196 5.93494 6.05539 6.19042 6.66873 6.86824 7.16747 7.44659 7.86911 8.98164 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.003938 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.218915 B = 7108.090387 C = 8370.089085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.245 3.755 3 H -0.026 1.026 4 C -0.516 4.516 5 H 0.073 0.927 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.970 3.030 9 H -0.258 1.258 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.446 5.446 13 C 0.048 3.952 14 C 0.381 3.619 15 N -0.371 5.371 16 N -0.332 5.332 17 C 0.187 3.813 18 C 0.013 3.987 19 C -0.165 4.165 20 C -0.134 4.134 21 C -0.163 4.163 22 N -0.469 5.469 23 C 0.210 3.790 24 C 0.183 3.817 25 N -0.550 5.550 26 C 0.247 3.753 27 N -0.379 5.379 28 C 0.089 3.911 29 N -0.290 5.290 30 H 0.061 0.939 31 H 0.005 0.995 32 H 0.021 0.979 33 H 0.262 0.738 34 H 0.014 0.986 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.148 0.852 46 H 0.249 0.751 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -15.363 -21.685 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H -0.008 1.008 4 C -0.555 4.555 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.795 3.205 9 H -0.182 1.182 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.171 5.171 13 C -0.099 4.099 14 C 0.023 3.977 15 N -0.214 5.214 16 N -0.170 5.170 17 C -0.082 4.082 18 C -0.026 4.026 19 C -0.185 4.185 20 C -0.171 4.171 21 C -0.200 4.200 22 N -0.165 5.165 23 C 0.085 3.915 24 C -0.100 4.100 25 N -0.277 5.277 26 C -0.050 4.050 27 N -0.171 5.171 28 C -0.051 4.051 29 N -0.121 5.121 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.265 0.735 47 H 0.120 0.880 48 H 0.133 0.867 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.234 -14.088 -21.603 26.136 hybrid contribution 0.117 -0.542 1.414 1.519 sum -4.117 -14.631 -20.189 25.271 Atomic orbital electron populations 1.21465 0.98113 0.97796 0.98822 1.18879 0.91968 0.90535 0.84656 1.00802 1.21361 1.31644 1.12573 0.89895 0.90854 1.25806 0.95167 0.95639 1.02213 1.70103 1.37687 1.24339 1.24099 0.85320 0.78021 0.78615 0.78528 1.18205 1.20864 1.20808 1.59029 1.11627 1.48394 0.98008 1.22319 0.83837 1.00181 1.03605 1.22931 1.00570 0.87922 0.86259 1.74688 1.21902 1.12548 1.12248 1.73849 1.20602 1.24680 0.97896 1.25356 1.00531 0.84749 0.97553 1.19728 0.95795 1.04892 0.82227 1.21873 0.95483 1.04081 0.97061 1.22837 1.03301 0.89341 1.01629 1.23129 1.02308 1.01618 0.92907 1.46234 1.50787 1.12044 1.07465 1.20055 0.92766 0.74177 1.04492 1.24029 0.97848 0.99707 0.88429 1.70486 1.18279 1.13815 1.25129 1.26715 0.91257 0.97550 0.89452 1.50757 1.21969 1.34959 1.09406 1.22334 0.82050 0.98546 1.02150 1.77889 1.03221 1.10619 1.20349 0.91986 0.97631 0.95945 0.92935 0.96717 0.89048 0.90103 0.87295 0.87004 0.92087 0.87709 0.90083 0.88769 0.86645 0.86123 0.83473 0.73475 0.88045 0.86683 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.96 8.80 71.98 0.63 -5.33 16 2 C 0.25 13.74 1.73 44.17 0.08 13.81 16 3 H -0.03 -1.66 7.91 -2.38 -0.02 -1.68 16 4 C -0.52 -28.99 7.95 25.60 0.20 -28.79 16 5 H 0.07 3.94 6.40 -2.91 -0.02 3.92 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -55.85 11.32 21.45 0.24 -55.61 16 8 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.45 -20.78 4.66 -710.99 -3.31 -24.10 16 13 C 0.05 1.89 9.13 127.69 1.17 3.05 16 14 C 0.38 17.11 6.00 260.11 1.56 18.67 16 15 N -0.37 -18.90 10.08 -58.00 -0.58 -19.49 16 16 N -0.33 -14.86 12.18 -49.54 -0.60 -15.46 16 17 C 0.19 6.41 7.28 137.64 1.00 7.41 16 18 C 0.01 0.29 5.86 29.85 0.17 0.46 16 19 C -0.17 -3.66 5.72 -10.80 -0.06 -3.72 16 20 C -0.13 -2.26 8.23 30.62 0.25 -2.01 16 21 C -0.16 -2.47 10.25 30.62 0.31 -2.15 16 22 N -0.47 -16.31 2.79 -518.92 -1.45 -17.76 16 23 C 0.21 5.46 6.69 85.63 0.57 6.03 16 24 C 0.18 5.21 7.72 138.63 1.07 6.28 16 25 N -0.55 -17.43 11.19 -191.80 -2.15 -19.57 16 26 C 0.25 5.60 12.66 180.36 2.28 7.88 16 27 N -0.38 -7.30 4.04 -373.61 -1.51 -8.80 16 28 C 0.09 0.73 11.53 127.77 1.47 2.20 16 29 N -0.29 -6.90 10.59 -51.34 -0.54 -7.45 16 30 H 0.06 3.84 6.07 -2.38 -0.01 3.82 16 31 H 0.00 0.28 6.27 -2.39 -0.01 0.26 16 32 H 0.02 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.09 3.63 6.30 -2.39 -0.02 3.62 16 36 H 0.08 2.53 6.69 -2.39 -0.02 2.52 16 37 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.11 1.72 6.91 -2.39 -0.02 1.71 16 39 H 0.06 1.85 8.07 -2.39 -0.02 1.83 16 40 H 0.10 1.54 8.03 -2.39 -0.02 1.53 16 41 H 0.08 1.47 8.02 -2.39 -0.02 1.45 16 42 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.12 3.05 6.70 -2.39 -0.02 3.03 16 45 H 0.15 2.54 7.10 -2.39 -0.02 2.53 16 46 H 0.25 3.46 8.06 -2.91 -0.02 3.44 16 47 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -85.44 398.52 4.26 -81.18 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.97 Total: 16.12 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 11.17 Total: 24.85 kcal Atomic # 7 Polarization: -158.34 SS G_CDS: -9.90 Total: -168.24 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -85.44 4.26 -81.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390901773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 285.932 kcal (2) G-P(sol) polarization free energy of solvation -85.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds